Array 1 131674-132922 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVOL01000076.1 Escherichia coli strain KG-7 NODE_5_length_286463_cov_9.59252_ID_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 131674 29 100.0 32 ............................. AGATCACACTTACCCTGCAAAATCTTAATGGG 131735 29 100.0 32 ............................. ACAATCACATATACGACGCGAGACGGAGATCG 131796 29 100.0 32 ............................. CTACCGGGACCGTTGGTTTCCACCATGACCAG 131857 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 131918 29 100.0 32 ............................. CTGACGGAAAGCCAATTCAACGTAATCTCAGG 131979 29 100.0 32 ............................. AATGGCGTTTATTTCTCCCATGTAGTGAGCTG 132040 29 100.0 32 ............................. ATAACAACGACACTCCGGCATATATAAAGGCA 132101 29 100.0 32 ............................. GAGACGGAAATCGCGGTTGATAACGCTGATAT 132162 29 100.0 32 ............................. CCAAAATCCCCTAGGAATCCCAGCACGGTGCG 132223 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 132284 29 100.0 32 ............................. TCTTCAACGGTTTTGATTTCAAGTTTTTTGAG 132345 29 100.0 32 ............................. CGTGCCGCTCTTGAGATCGGCGGAAAGTTTAT 132406 29 100.0 32 ............................. CCAGTGGAGCCGCCGCGAATTTACACACGATT 132467 29 100.0 32 ............................. GCGAGGGGCAGCCGTTCGCGCTGCATGTTGAT 132528 29 96.6 32 ..A.......................... AAAAAACAGTGGTACTACCGCCCCGCCGAACA 132589 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 132650 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 132711 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 132772 29 93.1 32 .A.C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 132833 29 96.6 32 .A........................... GACGCCGCCGCTGCGAAGCCGTTTCCGATGTT 132894 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTATGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTTGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 158622-160541 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVOL01000076.1 Escherichia coli strain KG-7 NODE_5_length_286463_cov_9.59252_ID_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 158622 29 96.6 32 ............C................ GTCAACTGGCACCACAAAATGATGGCGTCGAA 158683 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 158744 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 158805 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 158866 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 158927 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 158988 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 159049 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 159110 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 159171 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 159232 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 159293 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 159354 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 159415 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 159476 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 159537 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 159598 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 159659 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 159720 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 159781 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 159842 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 159903 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 159964 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 160025 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 160086 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 160147 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 160208 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 160269 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 160330 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 160391 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 160452 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 160513 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 32 29 98.3 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //