Array 1 105289-107391 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYSP01000002.1 Salmonella enterica strain CVM 43824 43824_contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 105289 29 100.0 32 ............................. AGAAAGATGCGTACGTTCAATGTCGAGCTTTT 105350 29 100.0 32 ............................. ACTGGCTAATCACGGTTAACGCCGTGCCGGTG 105411 29 100.0 32 ............................. CGGCCGGACTGATTTAACGAGGGGAATTTATG 105472 29 100.0 33 ............................. TTTTATCGTCGTAGCCTATTGCTAACTTGACGC 105534 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 105595 29 100.0 32 ............................. TAATCTTTCAGCGCGTCCTGGCGGTCAACGAG 105656 29 100.0 32 ............................. TTGAGTGCCACGGCCAGAGCGGTAGCCATTAA 105717 29 100.0 32 ............................. AAAACGGGTTTGCGGAAGGCTGGAACGCCTGC 105778 29 100.0 32 ............................. GAGCGGATCCGGGATCGTCAGCACTCTGAACC 105839 29 100.0 32 ............................. CACGATTTTATGTGCCGCGTCGAGGCGTGGGC 105900 29 100.0 32 ............................. GCGACCAAACCATTCGGATTCCGTAGGGGACC 105961 29 100.0 32 ............................. ATTTCTTGCCTATAATTTCCGGTTCGACGCCA 106022 29 100.0 32 ............................. CACAGATCGCGAGTTTGCTGGGTATATCTGAA 106083 29 100.0 32 ............................. GGGAATGGCTGGATCTGGTGTTGGTTATTTGC 106144 29 100.0 32 ............................. CCGCCGCTGTTCTTCTGTGTCTGCTTTTGTCC 106205 29 96.6 32 ...C......................... GCAGTAATCCCGGGTATTCCGAGTTATATGAA 106266 29 100.0 32 ............................. GCGTCAACCAGTTCTGGCATACCCTCCTCTTC 106327 29 100.0 32 ............................. ATTAGCTGATAAATCATCCAACATGTCACTTA 106388 29 100.0 32 ............................. AGTCGCTGGCGGATGTGCGGCGCACCGAAGCC 106449 29 96.6 32 ..G.......................... CACATAACCCGGCGCGATGGCCGATACATCAT 106510 29 96.6 32 ..G.......................... CGAGAGATCATAGACCAATGGACTGAAAGACT 106571 29 96.6 32 ..G.......................... TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 106632 29 96.6 32 ..G.......................... AGTACGAGGCACTATTCGGCAAGAAACCGCAC 106693 29 96.6 32 ..G.......................... GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 106754 29 93.1 32 ..G.....................C.... GCTCAAAACTCGGATGGTATAGGCGTGGCGCA 106815 29 96.6 32 ..G.......................... GCAAGCCACAGCGCAAAAGAGGTCTATTCCTG 106876 29 96.6 32 ..G.......................... GCGCTTCCGCCAACTCTCATCCGTGAAACGGT 106937 29 96.6 32 ..G.......................... CGCCATAAACGCGACTCCGTCACACATCCGTA 106998 29 96.6 32 ..G.......................... ACGCGTTAAAACTGCGCTCAATGCAGACGGCC 107059 29 93.1 32 ..G........A................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG 107120 29 96.6 32 ..G.......................... GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 107181 29 96.6 32 ..G.......................... ATAAATTATCGGGAAATCATAATCAGCGCCGC 107242 29 96.6 32 ..G.......................... AAAACCCTCAAATATGCGTAACGGGAGGCTGG 107303 29 96.6 32 ..G.......................... TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 107364 28 79.3 0 ..G............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 97.7 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGAGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.78, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125024-127005 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYSP01000002.1 Salmonella enterica strain CVM 43824 43824_contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 125024 29 100.0 32 ............................. TTTTTTATAAATCTGGCGAACCTGCACCCCCT 125085 29 100.0 32 ............................. CTCTCAGCCCCTCCGGGGCGCCCCGTGATAAT 125146 29 100.0 32 ............................. CATCCCCCCTCTTTTCCCCGGGTGTTTGTTGG 125207 29 100.0 32 ............................. ACGGTAGGAATATTCACGTTTTTTAAATCGGA 125268 29 100.0 32 ............................. ACGTGACCGCCGAAATGATTGCGGAAATCGCC 125329 29 100.0 32 ............................. CGCGCCCACCGTTCAGCCCTGGAAAAAGCGGC 125390 29 100.0 32 ............................. CCGCCTTCACCCAGCCCGCCGGACATCTGATC 125451 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 125512 29 100.0 32 ............................. AAATTTATGAGGAAAATTATGTCAGACAGTAA 125573 29 100.0 32 ............................. AGGAGTTGTTAGGCCAACTGTATAACGATTTA 125634 29 100.0 32 ............................. AGATGACCATCCCACCAAGCAGGCGAAGAAAA 125695 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 125756 29 100.0 32 ............................. AAAAAACAATGGTTTTACCGTCCGGCTGAACA 125817 29 100.0 32 ............................. CCGATGATCCAGAAAGTCACAAATGCGAGGAG 125878 29 100.0 32 ............................. AGGGGTTCAGGGGCGAGCGGGCGTTAAAGCGC 125939 29 100.0 32 ............................. CAGACCAGGGAGTTTCTGGCCGAACTGGAGAG 126000 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 126061 29 100.0 32 ............................. GGCGACGGCACAAAACGCTCAAAACTCATAAC 126122 29 100.0 32 ............................. TGTTGGCTGGTAACCACCGCAGATCGTCACCT 126183 29 100.0 32 ............................. ACCAGGGGGTTTTTTCCACGTATCGCCGCTGC 126244 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 126305 29 100.0 32 ............................. CCCTTTATCTTAGCCGCCAGAACCAGAACGCC 126366 29 100.0 32 ............................. GCCCCGATAGCGTCAACTACCAGGGCCTGCAA 126427 29 100.0 32 ............................. AATTCTTTTGCTTGCGCGTCGTTCATATCGAA 126488 29 100.0 32 ............................. GACAATCAGGGGGCGCTGGTTGACAGTATTAA 126549 29 100.0 32 ............................. TTAGTCAGGACGACTTTTACGGCTATGTAGGC 126610 29 100.0 32 ............................. CTATGAGCAACGATATCACCGCACTGGCGCAG 126671 29 100.0 32 ............................. CCGTAATGCTTTTATGTCCTCGCTTCGCTGCG 126732 29 96.6 32 ...................A......... GAGGTAAAACTAACTGGCCGCGTTGTCCGTCA 126793 29 100.0 32 ............................. TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 126854 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 126915 29 100.0 32 ............................. TGATATTTTTGGTTATTTGCGATTTAGTTTTT 126976 29 100.0 0 ............................. | A [127003] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCTCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //