Array 1 539504-540074 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP012958.1 Aggregatibacter actinomycetemcomitans strain VT1169 chromosome, complete genome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                  	Spacer_Sequence                     	Insertion/Deletion
==========	======	======	======	=================================	====================================	==================
    539504	    33	  97.0	    33	................................G	TTTTTGCGGGGGGCAGGAGCGCAGGGGATGTAT   	
    539570	    33	 100.0	    34	.................................	TGTTACCGGTACCGGAGGCTTCCGTACCCGCCAG  	
    539637	    33	  97.0	    34	................................T	TCTGCGTCCTCCTGGTTGTCGGGTGCATATAGAA  	
    539704	    33	  97.0	    35	................................G	CCTGCGTCCTTGTATGCACACCCACACTTTTTCCC 	
    539772	    33	  97.0	    35	................................G	ATTAGACGAATTTTATTTGCCAGTAGAAGTAAAAG 	
    539840	    33	  97.0	    36	................................C	GCGATTTCTTTGGTGTTGGTTTCTATCGGTAATGCA	
    539909	    33	 100.0	    34	.................................	ACCACTGCGCGGGAAATTGGACTTTTCAATACTT  	
    539976	    33	 100.0	    33	.................................	CTACCGGCACCTGGAATTGGTTAGCCAATACCC   	
    540042	    33	  81.8	     0	.......T....G.....A.C...T......T.	|                                   	
==========	======	======	======	=================================	====================================	==================
         9	    33	  96.3	    34	GCAGCCACCTTCAGGTGGCTGTGTGTTGAAACA	                                    	       

# Left flank :   TTGATGAGGTGAAAAATGTTAATGTTGATTACCTATGATATTTCTTTAGAAGACCCGGAGGGAAAAACCAGGTTGCGCCGTATTGCGAAGCATTGTCTGGATTATGGCGTACGGGCGCAATATTCGGTGTTTGAATGCGATGTAACGCCGGATCAATGGGTAAAATTGAAGGCTAAGCTACTGGCGACTTATGATCCGGATTGTGATAGTTTGCGATTTTATCACCTAGGCAGCAAATGGAGACGCAAAGTGGAACACCACGGGGCGAAACCGGCGGTGGATGTGTTTAAAGATGTGCTTGTTGTCTAGCTCGCTAACTCCTAGTTCTCATCAAATTCCCGTCAGGCTAGCGATCCTGATTTTCTTTAACAATTTGGAACAGTTAATTCATTTGTATAACGACGACATGCCCGTTATACTTATCCCACTCTCTATTTTGAAATAAGTTAGCGAAATACAGGAAGTAATCTACTGATTTTTCTTGTTTTTTCATATAGGGA
# Right flank :  AGGCGCTTTGTTACATCTGAACTCTGACACCAACTAAACTAAGCACCTTATAAAAATAAGGTGCTTTTCTTTTCCCGCAAACCAACACAAAACTCCTTGCCCTTCCTCCGCAAAATATATAGACTGAACCCCGTTATTAGTCGGGGTGCTTTGTGCTGAGATGATACCCGTGAACCTGATACAGTTAATACTGACGTAGGAAACTAACAGAGAATCACATTCCCTTTCTTTTTTCTCTTCTTTTATCGTCATTATTGCTGATTATCTTTTTTTCGTTAAAAAAAGGAAAAATTATGCAATATGGTTTTTGTTGTCCGTTATTTGTAAATAACGGAGGGCGTGATGAGTAAGGTTGCGCAAGCGTTGACCATCTTCGGTTCGGACAGCGGCGGCGGTGCCTGGGTTCAGGCGGATTTGAAGATGTTCCAAATGCACAGGATGTCGTTTGGTTCATCGGTGGCCGCGCAAAATACCTTGAACGTGGTTGATATTTACGCCGT

# Questionable array : NO	 Score: 5.66
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GCAGCCACCTTCAGGTGGCTGTGTGTTGAAACA
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [6,8] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA with 97% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-4.40,-3.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-6] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0.37   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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