Array 1 7437-10166 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSTF01000080.1 Phocaeicola plebeius strain OM08-14 OM08-14.Scaf80, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 7437 47 100.0 30 ............................................... ATTTAATGCAATGAAAACAGTACCATATAT 7514 47 100.0 30 ............................................... CAAATGGTCAGCCTTATCAGCATCGACCGC 7591 47 100.0 30 ............................................... TCGAACTGACAAGAGCACAGGCAGCCAAGA 7668 47 100.0 30 ............................................... TCTTACCGCATCACTATCATTGCAAAACAA 7745 47 100.0 30 ............................................... AGGATGGTGCTCCAATAACCTACACGGAGA 7822 47 100.0 30 ............................................... TATAGCGAGGAACATAACCAAGCTGAGAAG 7899 47 100.0 30 ............................................... TTTTCTTTAGAAGTTTAGCTTTTACTTATA 7976 47 100.0 30 ............................................... TATAATACCAAAAAGTAATCAATTAAAGCT 8053 47 100.0 30 ............................................... CTTAAATATATTATAGTTTATTTACGTTTT 8130 47 100.0 29 ............................................... CTCAAATATTTACTACTAACACTCAACTC 8206 47 100.0 30 ............................................... GTCAGCACTTCAAAACCTTCTCAAAACACA 8283 47 100.0 30 ............................................... AACATAATTAAATTCAATAAATATATTTAT 8360 47 100.0 30 ............................................... TTAAAAATATATTTTAAATAACTCAATCTA 8437 47 100.0 29 ............................................... TATATACGTTTATTCTCCTTTTCCGTTCT 8513 47 100.0 29 ............................................... TTTTAATTCACTACATATACATTCATAAT 8589 47 100.0 29 ............................................... TTGCTAGTATTACACCTCGCGTGGACTAT 8665 47 100.0 29 ............................................... GCGTTCAGTTGTTCCACCATGTTCAACTC 8741 47 100.0 29 ............................................... TCCTGAATTTATCGGTAAGGTAATGGCGT 8817 47 100.0 29 ............................................... TTTAAAATGAAATGATATGGAAAAACTTG 8893 47 100.0 30 ............................................... TTCCTTGCTCACAAATCTCTTTAGCTATAA 8970 47 100.0 29 ............................................... TTTTAATTCACTACATATACATTCATAAT 9046 47 100.0 30 ............................................... TTAAAAATAACACTATACAAACATCTTTAC 9123 47 100.0 30 ............................................... TTCTTATATTACATATCATCTATAACTCCT 9200 47 100.0 29 ............................................... AACAATCACAACAAAAGATACAGTACTAT 9276 47 100.0 30 ............................................... TCAACTCACGACTAATTCATTACATACATA 9353 47 100.0 30 ............................................... TCAATACCCAATATATCCACACTACATATT 9430 47 100.0 30 ............................................... AAATCACCTGCAAGCCCATACGCATCTCTC 9507 47 100.0 29 ............................................... ACTATTTCTAACTTACTTCCTTGTACCAT 9583 47 100.0 30 ............................................... TTATAAATATTTGACTTATCTTTTTTGTCA 9660 47 100.0 30 ............................................... CAGAAGACAGTTATGAGCTTTACGAAATAT 9737 47 100.0 29 ............................................... TTTCAATATCTCTTTATCTATTTCATATT 9813 47 100.0 29 ............................................... TACACCAATATTTTCTCTCATATTATGAA 9889 47 100.0 30 ............................................... TTCATTTTCATACACATTCTCTATACTCTA 9966 47 100.0 30 ............................................... GAATGGTACGTGCGGCTGTCAGAAGAGTTG 10043 47 100.0 30 ............................................... AAGAACTAAATCCGAAGCATTATCTGATGC 10120 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 36 47 100.0 30 GTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATTAGAAACAAC # Left flank : GGCCGACCGTGAAATCCGTACAGGGCCTTACGGTCTGGTGGGTTTCTGGATTGGCGGTACGAATGAGCTGGTTCGTGAAATCCGTTTCTGGAAGACAGCCCGCACACCCCAGCAGTTGAAGCAGTTCATGTGGAAAACGGTAGACGGAAGTGACGAAAATCTGCTGCTGTATTATCCGTTGAACGGAAAGAAGCGCAACCTTGAAACAGGAGAAATCACCGAGGACGAAACCATGCTTTGGGATTTCAGTAACAATGCCAAACATCTCCCTCTTCCTTCAGGGGCTAAGTTTGACGACAATGATGGAAAAGGCTTTATGTTCCCTTTGGTTGATTAATTATAGGTTTTATTAATGAAGAAAGGCTGTCTCCAACACTCTGGTGTGGAGGCAGCTTTTTATGTGTTATTATAGGGACAAATGATATTTAAATATAGAAAAACTTTTAGTATCTTTAAACAACGGGAAACAACTATCACTCCAAGAGCTCCCGTCTTCTTGT # Right flank : CTTGTTGATTGTTTCTTGTTGTCTATCAGTAGGTTATAAGTAAATTTAGAAAAAGAAAAAGTTGTTTCTTGAAATAATAAATCCCATATTAACCATGGGATTTATTATTTTAAAAGAGTTCTAATTGTTGTCCTGGTGTTTTTACCCCACTTGCTTTCTTGCCATAAAATAGCTCAATTTCTCCAAACTGTTTGTCTGTGATACATATAATTCCAACTTGACCATATTCAGGTAGAAAGGATTTTACTCTTTTTATATGCACTGCTGCATTTTCACTGCTTGCACAATGGCGTACATAGATAGAGAATTGAAACATTGTGAATCCATCTTTTTGTAGATTTTTGCGAAAATCAGTATAAGCTTTTTTGTCTTTCTTTGTTTCTGTTGGTAGGTCAAAAAGAACTAAAATCCACATAACTCTATATTCGCTGAAACGTTCCATTAGAATTCAGGATAAATGATTTTTCGTGATTCTCCAGAAAAGCATTTATATAGTGATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATTAGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.21%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.30,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 3393-3162 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSTF01000002.1 Phocaeicola plebeius strain OM08-14 OM08-14.Scaf2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 3392 36 97.2 29 ...........A........................ TTCCAGGCATACCGCTACGGCGATAACAA 3327 36 97.2 28 ...........A........................ CGAGCTAGCCTTTCTGCTGCTGGCGCAG 3263 36 100.0 30 .................................... TCGTAGCATGAAATGTCAGTTGTCAATGGT 3197 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 98.6 29 GTCTATATGACTAAGTAATTTCTACTATGTGTAGAT # Left flank : TTATAGATTTTTTATGCAGAGAAAATCAGAAACAGAGTTCCCTTTATTTAAATATTAATGGTAATAGTTAGTTATGACATATCGGATGACCTTATCCGCTCTCGATTTCAGAGAATGCTGACTAAAAATGGTGCAATTCGTTTGCAATATTCAGTTTATGAAGTCGTTAATACAAAAAGAGTGATTGAGAATATAAAATTAAAGATTGTTGCGTATTCCAAACATTTTAGTGCAGATGATAGTGTGGTCATTTTTGAGATAAATAAGGATACCTTGGTAAAATACGGGAATGCTATTCATCGCGATACTGATATAGTTTTCTTCTAATAATTATAGGCATTACAAACCTAAGTCTTCTATATCAATAACATAGTTTGTAATATGCTGATTTACAATGCGCCTATTGAATTCTATAGATTAAGGTGGGGAAATATTCCGATAAAAATATAGGCTTATTTATTTGATTATTAATAAAAAATATGGATATTTGCATAGTAAGC # Right flank : TAAAGCAATGTCACATTTCGTTTTGCGTGTCTATATGACTAATTAATTGTTATTGGTATACTCAGTTCGTTTATATGGTCAAGAAATTTTATATTAGAGCTCTATTGGGTAGGACACCGATGGAATGAAGTATTAAAAAGCTTATGGAAGATAAAGACAAAATATACGGAAACCAGTGTGGAAGCGACAATGCTTTCACCAGGAAAGCAAGGCTGCTTCAGTCTATGTACAGTGTGGAGATAGGCGAAGAAGAAGGAGTACGGCCTATAAAAGCCTCCAAGCAAAATATGGGAACATGATTAGTGGGGTGAGGTGTCCGGAAAGAACTTCCTTATGAAGGAGGCTTTCGAGTACGCCAAGAAAAGAGTGGCCAAGAAAAGTAAAAATGAGACAATAGACGGGTTCAGGCTGTTCAACAATCTGCTTTCGAGCCAGCCGATGACATTTATCTGTTCTATCCCTTGATGTTGTTGTTGAAGCAGGATCCGGCAATGGTTACG # Questionable array : NO Score: 2.79 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTATATGACTAAGTAATTTCTACTATGTGTAGAT # Alternate repeat : GTCTATATGACAAAGTAATTTCTACTATGTGTAGAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 43392-43026 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSTF01000006.1 Phocaeicola plebeius strain OM08-14 OM08-14.Scaf6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 43391 36 100.0 30 .................................... AGGATGGTGTTTATACCTGGTATATGTCCG 43325 36 100.0 30 .................................... TGGGACGAGAAGCTGAACGCGAAGACCATC 43259 36 100.0 30 .................................... AAAAACTGTCGTGGGAACTCTTTAAGAAAA 43193 36 100.0 30 .................................... AGAAGGGAGCTGAAGGCTATGTGGCCGAAT 43127 36 100.0 30 .................................... GGGATAGATTGTTTTTCTGAAAACCAATTC 43061 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 100.0 30 GTTGGTTTTATTATTGTTTTGAATGGTATATCCAAC # Left flank : CACAAAACCATGTTTACAGCCGTGAGGTTATAAAGCAGGCTTTAAAACAGAATGCCGGAACTATCCACATGGAGTCATTGAAAGATTTTGGAAAAGGTAAGGACGGTTATGTAAAAGACGAGTATAAGTATCTGCTTCGTTATTGGTCGTATTACGAACTGCAAAGTATGATAGAATATAAGGCGAAATTGGAAGGTATTGAAGTGAAATATATTGACCCTGCATATACCAGCCAGACATGCAGCTATTGCGGAGAACGTGGAGAACGTAAGAAGCAAGAAGAATTTGTTTGTACGAATCCCCAGTGTAAACGACGAGGAGAGAAAATAAATGCAGACTTTAATGCTGCAAGAAATATTGCGATGAGTAAAAAAATCGTAGAAAGATAATTAGAGAAGAAATTTTCTAATTGGGGCTGCTGGAAGTCCTTAACCTGAGATAGGAAACTATACTCGGGAAGTACGTCAAAACATTGAAATTGACAAACTTAGAAACAAACA # Right flank : TATAAAGTTGCCTGCGATGATGTGCGCATGGGTGTTAATAATCGTGTCTTTTTTTACTGATTTTAGTTATAAGGTAATATACTTATAAGGCATATTATTGCTAACGCATGTAGTTGCTTATCACATACGTTAGTAATCAATTGTTGCATACGTTAGTAATAAGAAGCGACTAACGTATGTAATAATCTGCAAGAAAACTTTGTCATTTCAAATAAAATTGTAACTTTGCCATTACAGTCCCAACTAATAAAAAAGGAGGTCAGTATGTACAAGTACAAGCTCGTAAAGAAAATCAATCCGCAGGATAAGGCAGCACCTAAGAAATGGTATGCAATTCCTATCAGCGAAGTTCCACAGACTGTAAAAGCCATGACATGTGCAGCTACGGAAAACACGACAACCGCTCCCATAGAAATGGAAGCCGCTCTTGAATTACTTGGAAGACACGCACGTCAGCAATTGCAGCAGGGACACACAGTAAGAGTAGGTGATTTAGGTAC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGTTTTATTATTGTTTTGAATGGTATATCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //