Array 1 41957-39487 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFVV01000015.1 Escherichia coli strain KK-NP004 sequence15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 41956 29 100.0 32 ............................. GAGAGAGTCCAGTATCAATCCCGCAATCCGCA 41895 29 100.0 32 ............................. CGTACAGTATAACCTCATCCGGGAGCGTCTCA 41834 29 100.0 32 ............................. CCACCCTCAGATCGCCCTTGTACATCATGTAC 41773 29 100.0 32 ............................. CGCACCGGCTGAGCCAGCAACAACAGAAACCG 41712 29 100.0 32 ............................. ATCCGTACCGGCTGCGCCGGGCTTCGGCGGCT 41651 29 100.0 32 ............................. GGCGTGAATGAGGAATTGAACTTTGCATTCAA 41590 29 100.0 32 ............................. AAAGAGTTGGGACTGATCAGTTGCCAGCAGCC 41529 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 41468 29 100.0 32 ............................. CATCCGTTCAAATTCCATCAGATAGCAAACCA 41407 29 100.0 32 ............................. TATTGTTGACTGCTACGAATACGCAGACGAGC 41346 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 41285 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGTGA 41224 29 100.0 32 ............................. TCGCACTCAATTTCGTCAGTGAACGGGAACCC 41163 29 100.0 32 ............................. ACGCCGAAAACGGTTGGTGCGTATAGCGATAT 41102 29 100.0 32 ............................. AGAGAGTGGTTTGAAGCCGCTCCCAGGGACGA 41041 29 100.0 32 ............................. CGGAACAACAGGTGCAACTCAGGGCACAGGAA 40980 29 100.0 32 ............................. GGTTATTTATAATCCATTGTTTCCATTACCAG 40919 29 100.0 32 ............................. CTGGTCGCGGCAGGGCGTTCAATTTTAGGGGA 40858 29 100.0 32 ............................. TAATCATTTGGGGCCCCATTAATTAAAAGGAT 40797 29 100.0 32 ............................. GCGCTCACATTTAGCGCCAGAGCCAGGCGGCG 40736 29 100.0 32 ............................. AATTCGGAATCACATTAAAAGGGAACCCGATA 40675 29 100.0 33 ............................. GTTTGAAGGGCGTTTGGAGGAACCCGCGCGTGC 40613 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 40552 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 40491 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 40430 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 40369 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 40308 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 40247 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 40186 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 40125 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 40064 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 40003 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 39942 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 39881 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 39820 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 39759 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 39698 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 39637 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 39576 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 39515 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 41 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 94881-96678 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFVV01000033.1 Escherichia coli strain KK-NP004 sequence33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 94881 29 100.0 32 ............................. CCAGCGACCGCGACATCTCTCTATATCTCCAG 94942 29 100.0 32 ............................. CTCCCGTTTTTGGGTACATTCGTTTTTGATAT 95003 29 100.0 32 ............................. GTGGCTGAACTTCCGATGCGATGAATGTTATT 95064 29 100.0 32 ............................. GCGAATGCCCCATCTGTAAACGCCGGGGAAAA 95125 29 100.0 32 ............................. GGATTTTCTTTGGTGGGGAATGCCCGCCGTGT 95186 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 95247 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 95308 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 95369 29 100.0 32 ............................. GGAATAATTACCGCGCTGATTAAATTAATTAA 95430 29 100.0 32 ............................. GCGGCAGCGCCCGCCGGGTACGACGGCAGCAC 95491 29 100.0 32 ............................. CGCTTTTGCTCAGTAGTGAGTGTGATTTCATC 95552 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 95613 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 95674 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 95735 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 95796 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 95857 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 95918 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 95979 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 96040 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 96101 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 96162 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 96223 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 96284 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 96345 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 96406 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 96467 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 96528 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 96589 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 96650 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 30 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTATCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTTGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //