Array 1 10856-14384 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023154.1 Pyrococcus furiosus DSM 3638 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================= ================== 10856 30 100.0 48 .............................. TTATATGATTCATTTCTTGTCTTAAGCAATCTGATCTGACCAGAGCTG 10934 30 100.0 36 .............................. TAAAGTTTATAAACTTTTCGTGTATAGAAAAGTGCA 11000 30 100.0 38 .............................. CCGGTTCTGCACCCGAAACTTTCATACCAAAATACTCC 11068 30 100.0 36 .............................. GGTCATACTTTACTGCTACAACCCGCTCTGGGTCGA 11134 30 100.0 40 .............................. CTCTTATGCTGAATTTTTCTGAATCTTCGGATACTGGCAA 11204 30 100.0 37 .............................. GCGTTAATGAACAATAAGCCTGACACGAACATAAACA 11271 30 100.0 38 .............................. GGAAATGTGCGTAAAGGTTTTCTTCCCAGGCTTTCGCT 11339 30 100.0 36 .............................. GTAGTGAGGCGTTGAACTTGACCCACCACCAGCCCT 11405 30 100.0 39 .............................. CACTACTGTCCTCTCGACAATTGACGTTATTACAGTCGA 11474 30 100.0 38 .............................. TCAAAACTTTACAAAAGTAAAGAAAAAATTGAACGGGT 11542 30 100.0 37 .............................. GCGTGCCGTGTGTTTTTATAACTGCTCTAATGTGTCT 11609 30 100.0 37 .............................. TTGCTGCATATCCAGTGTGGTTGGTCTTGAGGTATAT 11676 30 100.0 37 .............................. AGACATTAGGAGACAGTATAGGCCAGAACTTGCCCAG 11743 30 100.0 36 .............................. TTAGCAAATTGCCGATTACTGCACATAAAAAAAATA 11809 30 100.0 37 .............................. TTTTTTTGCCCGTTTTTTCTTTTCCCTCACCGCTTTT 11876 30 100.0 38 .............................. AGAATCTATAAGGGATTGAAAGGTCAAGGGTATACTAT 11944 30 100.0 37 .............................. ACGAACCTCTTTGATCGTAAAAATTTCAATCATCTCT 12011 30 100.0 39 .............................. CTCCTATGCGGTCATTAGACCCCCGCCGGGGGCCGGCAG 12080 30 100.0 38 .............................. TGAGTTGTTTAGTCTAACTCTTACACCATCAGAAATAA 12148 30 100.0 38 .............................. ACAAATTAGTCAGAACCCCCCGCAATGAAAAATTTTTG 12216 30 100.0 35 .............................. GACAGCGTGGACACGGTGAACGGGCTCTGGAAGGA 12281 30 100.0 37 .............................. TGCGCTATTCTCGGGTCAAGCCTCCCAGCCTGAACCT 12348 30 100.0 36 .............................. AGCGGTCTGAGCCTGAGCCGTCGCTCCCTCAAGCGA 12414 30 100.0 38 .............................. TTATTCCTGATAGAACCTTTGCCACTGTTGAATTCCAG 12482 30 100.0 37 .............................. CTGTATTTCTTGCGGTAATACCCCCCAAATAGTTCCT 12549 30 100.0 36 .............................. CATACTTGCGGATACGGATCCAGTCAAAACTTGACT 12615 30 100.0 37 .............................. AACACTTTCCTTAACTCTGGGTCGTCTATGTTTTTGA 12682 30 100.0 38 .............................. CTGGAGCGTTGGGCACAAGCATGGGGATGATTGTGGAG 12750 30 100.0 37 .............................. AGGGTTGGGTTCTCAATGGTGTATGGAGCGTTTCTTA 12817 30 100.0 38 .............................. CTATTAAACGCAATCCGCTCAGCCAAACATCACCCCTC 12885 30 100.0 37 .............................. TGATGGAGTAGATGAAATTCCTGGGGTGTCTTGGGAA 12952 30 100.0 37 .............................. GGTCTCATCTCCTGCAGCCTTTCTTCCCTCAACCCAC 13019 30 100.0 38 .............................. GGAGCTAGAATTGATGAAGGAGGTTGCTCAAGTAGTGC 13087 30 100.0 37 .............................. CACAAAGTTCTTCCATTCTACTAGTCCAGCTCTCTGT 13154 30 100.0 37 .............................. CTGTCTCCCTAAGAGCATACAATCCTCTGTACTCTAT 13221 30 100.0 38 .............................. GGAGTAGAAATGCCCAAATTCCCCTTAGGGACAAGATG 13289 30 100.0 40 .............................. CACCACCACGATGAAGGTACCGTTCTCAACGTCTACTTCA 13359 30 100.0 37 .............................. AATCAACCCCAAACCTTGCAAGGGTTGCCTCAACTGG 13426 30 100.0 38 .............................. AACTTCCTCTCCAACTCCCTCACCTCCTCATCCGACAA 13494 30 100.0 49 .............................. ACTGGATTGAGAGCAACTTGTCGAATTATGTCGTCAAGCTCGTCATTGA 13573 30 100.0 42 .............................. GATAATGCTAGGTTATTATATAGGTATAAGGCAAGGTGTCCA 13645 30 100.0 42 .............................. GTTTCCAAGCCATTCCAACCACCCCACATGTGTTGTTTTCAT 13717 30 100.0 40 .............................. TTTGTGATAGTGTTCTTTGCAACGAAGAGCTTGCTGGTCA 13787 30 100.0 37 .............................. GAACATTGTCCCCTCCTCCAAACAGTTTTTCATGTCT 13854 30 100.0 37 .............................. TAGAGTGCGGCGATTATTTTGGTTCTCAGCGTTGCTC 13921 30 100.0 37 .............................. TCAGCAGTTACGTCGTTCTTCCAGGTGAGAATACCAT 13988 30 100.0 49 .............................. AATAATCAGCAAAATCACGGGACATAGAAGGCTAGACTACATCCTACAC 14067 30 100.0 39 .............................. AGAGAATCTGGTAAGGAGACAGTAAACTGATCATGCAAT 14136 30 100.0 43 .............................. GAGTTTCCAAGATGAGTGCCCCGAGCCGGGGGCTCGGGGCATG 14209 30 100.0 46 .............................. AGAGGCCCCCACATCTGATTTAATCTGAGATGGAACTTCCACAATT A [14220] 14286 30 100.0 38 .............................. ACGGTTGGCCTTGATACACTGGCCAAAAGAAATCTACG 14354 30 90.0 0 .............A......A........A | C [14366] ========== ====== ====== ====== ============================== ================================================= ================== 52 30 99.8 39 GTTCCAATAAGACTAAAATAGAATTGAAAG # Left flank : TTCCAGGGAATATTTAAGGATAGTTATATTGAAGATTTTTCGGTACACGATGTTTGGGCTTATTTTTTGATTCTTGGTTTTCTTTGAGCTTTATTCTTGAAATAAAGGTTTTTAAGGGGTTAGGATTTAATTTAGTAACTTGAAGTTATTATTTGCAGCATGTTACAGTTTTGCTACTTATTTGTTACGAAAGTTTTTCGAAATTTTTTGAATAGCATGCTAAATATAGATTTTTGTAAGAAGTTTGAGAGATTCTGTTGGATTATTATAATTAGGTAGGAGTTTGCTTGGTTGAGTTAGTTAGGTATTCCTCTGGGATAGGGTGTGAAAAGGGTTGATTTTTCCCAGGGTTACCCTGGGAGTATTTTTGATTTAGGGTCTCAGGGGGCGTTGGTTTGTTTATAAATGGGGGGTTGCTGGGTAAGTTGGATGCCCCGTAAAGGTTATAAATTCGAGTGATATAGTTACTCCGTAGGAGTATTGGGGCGAAAAAGCCCCCT # Right flank : AAGCACATTTATTTTTCAAAGGTGGAAGAGACACATGCTCGGATATTTGAATGTGAGGTCTGATAAGATATGTGTTCGATGTTTTTAACACGAGTTTTTAAATTAATGAAAATACGAGATATTTTTCTATTCTTTGTTTAAAATTGTTTCTAATAAAAATTTTTAAACTAGAAATTAGAAAAATTCTAAAGATCTAAAGAATCACGGCAATCATCATGGAATTAACGTTCGTTCTCGTGGGCCCAGTTATAACAAGAGCCTTCGCCCTCTTCAGCGCCTCATAGGCGTTGTGTCTCTTTAAGTATTCCTCAACGTCAATGTTCTCTTTTTTAAGAACCTCCAATGTGTAGCTATCTACCAATCCTCCAGCAGCATCTGTGGGCCCGTCAGTTCCGTCGGTATCTATGACCAGCACGGCAACTCCTCTAAGCCCTGCTATCTTCCTCGCTATACTTAGGGCAAGCTCCTGGTTAGGCCCACCAAGCCCAGCTTCCCCCTGT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTAAAATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: F [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 2 244471-245939 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023154.1 Pyrococcus furiosus DSM 3638 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================= ================== 244471 30 100.0 39 .............................. TGTTCATCGCACTTCTTCTTCTGACTCTGCTCCACTTAG 244540 30 100.0 37 .............................. GCGTTAATGAACAATAAGCCTGACACGAACATAAACA 244607 30 100.0 37 .............................. TTTCAATAAGGAGTTTCAAATGGCTCGATGGAATTAT 244674 30 100.0 42 .............................. AGAACCTCCGCAATCTCCTTTGGAGAAAGGCCCTTCTTGAGA 244746 30 100.0 38 .............................. CTTCTTCGAAGTCGTAGTTTAGTGTGTCAAGATATTCT 244814 30 100.0 37 .............................. TTCTAGAAGTTCTCTTGCGAGAGCCAAGAGCGCGGCT 244881 30 100.0 37 .............................. GTGTACTTAAGAATTTCTTTCATAACTTTTCTGAAGA 244948 30 100.0 38 .............................. ACATAAGAGACGGAGAGCTTGTTATCTGGAAAGCAAAT 245016 30 100.0 43 .............................. AGTTATAACAAACCAGCATGACCCGCTCTCGGCTGAGTGGCAG 245089 30 100.0 37 .............................. CTACCATGGCCATCACCAATAATTAATTGTAAGTTAG 245156 30 100.0 36 .............................. ATTTGCTGACAAGCCATCGCAAAATTCTTCTGTTTT 245222 30 100.0 37 .............................. AACTCCACGACAGCATAAGGGACATTTACCATCGTAT 245289 30 100.0 38 .............................. TTTTTGTGCTGAGCCAACCCACCACTTTGGTAAAACTA 245357 30 100.0 49 .............................. GGGGCTGCGGGCCGGCTCACACCCCGAGCTCCCGGCTCGGGGTGCTCAT 245436 30 100.0 37 .............................. TGGGATAATAAAGCCTCTATACTTCTTTGAATAATAG 245503 30 100.0 37 .............................. TCCAACATGGTTAACTTCCATCCTCTTAAAAGGAACT 245570 30 100.0 37 .............................. GTAAGGTATTCTTCATAGACACCGCTCTGCATAACGT 245637 30 100.0 37 .............................. TTGAGGCTGGAGAGGGCTTCTTTGTTACTACTTGCGT 245704 30 100.0 37 .............................. TTAACTCGTTTAGTTTTATGTTCATGTTCCACACTAA 245771 30 100.0 39 .............................. CTAATTTACGCTTTAGCTCGTGATCAACCCTAATCCCTA 245840 30 100.0 38 .............................. ACACTCATGTTTTGCTCGTATATGGGACTGACGGTGAA 245908 30 93.3 0 ...............A.............T | T,T [245927,245935] ========== ====== ====== ====== ============================== ================================================= ================== 22 30 99.7 38 GTTCCAATAAGACTACAAAAGAATTGAAAG # Left flank : TTTATGTGGAAGATATGAAGCATTAGAAACGAAGATTTTTCGGTACACGGTGGTTGGGCTTATTTTTGAATTTTTAGTCTTCTTTGAGCTTTATTTTTGAAATAAAGGTTTTTGAGCGATTAGGGTTTAATTTAGTAACTCAAAGTTAGTATTTTCAGTATGTTACAGTTTTGTTGCCAAATTATGACGAAAGTTTTTCGAAAACTATCAAATAATATTTTAAGAGGAGATTTTTGGAAAGAGTTTGATAGTTTCTGTTGGATTCTTTCAAAAGATTGCGAACTAGCTTGGTTAGAATAGTTAAGTCTTCTCCTGGGATAGGGTGTGAAAGCAGTGTTTTATTCCCAGGGTGCTCGTGGGAGTTTTCTTGATTTAAAGTCCCAGGGGGAGTTGGTTTGTTTATAAATAAGGGGTTCTTGGGTAAGGTTGATGTCCCGTAAGGCTTATAAATTCGAGTGATATAGTTACTCTGTAGGAGTATTGGGGCAAAAAAGCCCCCT # Right flank : TAATCTGCGGTGGTGGTGTGTAGGGACAAAAAGACAGAAACTCCTGAATAGGGGTGGGAAAAGGGCATGAATACCTATCTATATGTCAGGAATGACAAGTTCTTCCTCCGTTAGCAAGAATTTCCTATAAGCCTTGAGTATATCTCTATATCTTCCCTCTACATTTCTAATTTTCTAAGAATAAGGTTTGAAAAAAGCTCAAAAAGCGTAACCTTCACTTCTTCCACTCTGTATATCCACACTTCCCACAGGCCCACCTATCCCCGTGATCTGCCATGAATACTCCTGGGCCACAGCGCGGGCAGAACTTGTTCTTTCTTATAACTTTCCCATCCTTAATCTCGTAGAGCTTCCACTTCTGTCCCATTCTCACTCACCCTCCTTCTTCTCTATTAATCCATCTCTAATTAAAATGTACTCGGGCTCTATGTAGAGCATTCTCTCCTTGCTGTCGTATGCCTTCGCATATCCCTTGCTTATGTAGCTTCCGAAGTAACTCC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTACAAAAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: F [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 3 295440-297033 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023154.1 Pyrococcus furiosus DSM 3638 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================================== ================== 295440 30 100.0 37 .............................. GAATGTTGCTCAATGCAAAGGGCTCACCGCTGCTGGT 295507 30 100.0 35 .............................. TTGAGTTGAAGCGCCACTCTTTGAAGCCTATCAGA 295572 30 100.0 37 .............................. GCTTCAGGTCTTCAATATTCAATCCCGGTCCCTTTCA 295639 30 100.0 37 .............................. TCGGGTCCCTTGGAGTTCCGAACGGGCTCCCGAGGCT 295706 30 100.0 38 .............................. TTGATTCCCTTATAGATGTTCGTTTTCCACACAACTAA 295774 30 100.0 39 .............................. CTGTATATCCTTTCGTTTGTCTTCCACACTTTCAACTCT 295843 30 100.0 38 .............................. TATGTTCGTTCTCGTTCACTGTTATTCTCTTTTGTTCA 295911 30 100.0 37 .............................. AAAAACTAAAAAAAGAAGAGGTGGTGGTGAAGAATGT 295978 30 100.0 38 .............................. CTTTTCCTGCTCCTGCTTAACAAAAGAATTGTTGGCTT 296046 30 100.0 36 .............................. GGAACCACAGACCCAATCGCAGTAATTTGGGTTGAC 296112 30 100.0 37 .............................. TCATGTATTTTTCTTCTCCCAAATCCAGGGGCTCCCA 296179 30 100.0 37 .............................. TCTCAATTGGGGAGTTGCTTTAATGGCTTTTGGAGTG 296246 30 100.0 39 .............................. AAGATAATCGCTCAACAGTTTCAATGCTATACTTGTCAA 296315 30 100.0 38 .............................. TAATCTCAATAACTTTGGCTTCTTTTCTGTGTTTGTTT 296383 30 100.0 47 .............................. GATTTCAGAGAACAACGGTGAATTTAAGAATTTCCTGACTTTCAATT 296460 30 100.0 37 .............................. ACACGAACTCCCAACATTCTTCACCACCCCTCCTTCT 296527 30 100.0 39 .............................. TTGCTGATTACGAAGGCATATCCTTCAATTGTTGCTCGT 296596 30 100.0 39 .............................. ATAGACTTCCCTTGTGTACTTTAGTAGTTCTGCAAGTAA 296665 30 100.0 43 .............................. GAAGGATAGCAGGATCTAATGTAATTCTCGCGACATCTTTAAA 296738 30 100.0 39 .............................. GATGAGGAGTGAAAGTTCTTGCAAAGCCCTTTCCAAAAG 296807 30 100.0 36 .............................. AGTATCGCTACTGTTTTCATGCACCACTGCACCCAT 296873 30 96.7 36 ..............G............... AATCAATCCGAGAATCGAATTTTCCTATACGCTTTT 296939 30 100.0 35 .............................. TTTGTTTTTGCTCCTGTGTCTTGTGGTGATAAAAT 297004 30 96.7 0 ...A.......................... | ========== ====== ====== ====== ============================== =============================================== ================== 24 30 99.7 38 GTTCCAATAAGACTACAAAAGAATTGAAAG # Left flank : TATTTTATCCGCAAGTTATAAAAGTTTGCGCAAAAATTTTCGGTACACGGTTTTTGGGTTTCTTTTTGGATTTTTAGGTTTCTAAGGGCGTAATTTTTGAATTGGGGGTTTTTGGGGAGTTAGGGTTTAATTTAGTAACTTAAAGTTATTATTTGCTTTGTGTTACAATCTTATTGTTAAATTGTAACGAAAGTTTTTCGATGAGTTTTTAAAAAGATTTTGAAGTGTTGTTTTTTGAATTGGCTTGAGGTTTTTTGTTGGATTCTTGTAAAAAGGCAGGAATTAGCTCAATTCAATCATTGAAGCTTGTTCGTTGAATAGGGTTTGGTAAGGGGTATTTATAATCAGCTAGTTTTTTGGTTTGTTTTTGGTTTAAAGGGTTATAATGGTTTGTTTTGTTTATAAATGGGGGGTTGTGGGGGAAGGTGGATGTCCCGTAAGGCTTATAAATTCGAGTGATGTAATTACCCCAATGGGGAATTGGGGCAAAAAAGCCCCCT # Right flank : GCAAAAGAATTGAAAGAAAGTAGCATCGGTAAAAGAGACATTGTAATTATATATATGCTCCTAATACCGCTCCTTCTACTTTTTTGGAACTTTTGCAAGTATTAAGAACATTAGATAATAGAGGAGAGGTAGACTCTATAGAAGAATGTCATCTTCACACTATTCCTGCTCTCCACTCTTCTTCTAGGTTTGTTTGTAGGAAATATAAATTTGTGATCACTGCTGACCACAACTCTAAAAACTATTGAAACCCTAGATTTTACCATGCCTAATGATCTTAAGAAAGAGCTCAGAGAACTTAAGGAAACTCTTGAATACCTGAAGAAGAGTTTTGAGGTAATTTCACAGTTGGCTCAAGCTTACATAAGGCTTCTAAACGTTTACGCCGAATATGGGGATTTGGGAATAGATGTTGTTATTCCTGAGATAAAGCATGACCCTATTGCTAGAGATATAGTGAAGATACTTTTTGACCTTAGGCGCGCTAACGTTAGTCAAAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTACAAAAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: F [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.27 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 4 607461-605404 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023154.1 Pyrococcus furiosus DSM 3638 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 607460 30 100.0 37 .............................. AGCCAGGACTTCGTTTCTGGACATGCTGAGATCAAGG 607393 30 100.0 39 .............................. GACCATACTCACCAGCAGCGGTGAGCCCTTTGCATTGAG 607324 30 100.0 37 .............................. AAGGGGAATGGTTCACGTAGTACTTGAGGGCGCTCAC 607257 30 100.0 36 .............................. AAAAGATCAAAACAATAACACAGTCCTAATGCTCGT 607191 30 100.0 37 .............................. ACCACTCCTGAAAACGCTAGCAGGACTAGTGCTTGTG 607124 30 100.0 37 .............................. GGAACTCCTCGATTTTAGTACCTGTGTCAGAGTCATA 607057 30 100.0 38 .............................. AGGCACTTGGCTTGGAGGGATGACGTCCACTATTTTCA 606989 30 100.0 37 .............................. TCTCAGCATACTCCTCATCCGTCAGCATATCATAGCG 606922 30 100.0 37 .............................. TAAGCATCATAATGCAAGACATCTGTATATATAATAG 606855 30 100.0 38 .............................. TCTCTACCCTTACAAGCTTCTCGAATCTATCGAATTCG 606787 30 100.0 38 .............................. CCTTCTCAGAGGGTGATTTATCTACATACCTATTATAT 606719 30 100.0 37 .............................. CCACATAAGACATTGTCATACAAAGTAGGACAAAATA 606652 30 100.0 38 .............................. GTCACGTAATTCGCCAAGTCCTCTTGGAGACCGTTCCT 606584 30 100.0 36 .............................. GTGGATAATATAATCCCTGTTTTTCCCAAGAATTAA 606518 30 100.0 40 .............................. AGATTTGGGTCTAAGGGATATACAAAAGATGCAAAGAAAG 606448 30 100.0 38 .............................. AGTGCCCTATCAAGAAACATTGCCACATGCCATGAATA 606380 30 100.0 38 .............................. GTGTATACGGTATGCAACACATCAATAACTAGCTTGGC 606312 30 100.0 38 .............................. TTCACTAGCTTTTCACACACTCTCATGGACATTAGCTA 606244 30 100.0 36 .............................. TAATCTCAATAACTTTGGCTTCTTTTCTGTGTTTGT 606178 30 100.0 38 .............................. CTGATAGTAAACTACGCTGATTTTGTAATACAAAAGTC 606110 30 100.0 37 .............................. CCTTATACTTCCCTGCCTCAACGAATACATTAACAAC 606043 30 100.0 42 .............................. TATCTTGAATCTCTCATTTACTTCAGCAATCGGTAACTCCGA 605971 30 100.0 38 .............................. GCAATGAAAAATTTTTGCAATGTCGAAATCAATGCCCA 605903 30 100.0 37 .............................. TGGAACTCTATCAAGGTTTGCAACACCTTGCTCCCGC 605836 30 100.0 35 .............................. ACCTAGCCTTCACATCCCTCGACACCTTCTCAGCT 605771 30 100.0 35 .............................. AACGAACCACTCAATAGTGTCGCCATAATCACCAT 605706 30 100.0 39 .............................. TGAGTCCCCTATAAACCTGTGGTCTTGGTCTCCTTACAA 605637 30 100.0 38 .............................. GCCGACAACATCAGCAACGGTGAGCTTATTGTAAGGAG 605569 30 100.0 38 .............................. AGTATTCCACCGAGAATTGTGCCTTTGTACTGGACTGC 605501 30 100.0 38 .............................. AGTCCTAAGTCTCCAGCAAACCACCCGTCTAACCACCT 605433 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================== ================== 31 30 100.0 38 GTTACAATAAGACCAAAATAGAATTGAAAG # Left flank : ATTATCTTGGTTGAATTTTATATCTTTTCTGAAGATTTTTCGGTACAGGGTGGTTGGGCTTATTTTTCCATTTTTAGTTTTCTCTAGGCTTTATTTTTGAAATGGAGATTTTTTAGGGATTAGGGTTTGATTTAGTAACTCAAAGTTAGTATTTACAGTATGTTACAGTTTTATTACTTATTTGTTACGAAAGTTTTTCGAAAATTTTTGAATACCATGATAAAGACAAATTTTTAGAAAAAGTTTGATAGTTTCTGTTGGATTCTTTCAAAAGATTGCGAACTAGCTTGGTTAGAATAGTTAAGTCTTCTCCTTGGATAGGGTGTGAAAGCAGTGTTTTATTCCCAGGATGCTCGTGGGAGTGTTTTTGATTTAAAGTCCCAGGGGGAGTTGGTTTGTTTATAAATGGGGGGTTGCTGGGTAAGTTGGATGCCCCGTAAGGGTTATAAATTCAAGTGATATAATTACTCCATAGGAGTATTGGGGCGAAAAAGCCCCCT # Right flank : AAAGCTTTCAATAAGCCCTACACTAAAATTACTTAAGCACTTAAGCAGGTATTTAGCTCTAAAAACCCCTCAAAAGCTTTAAAAAAAGTTTATAGAAAATAAATAATAAAGCAACACTAATTATTCGGCCCTATATATCTCCTCAGAGAATGTAACGAATTCTGTCCAGGATAGATGTGCCAAGAACTTAGCCTTTGGATTTGGCTTTCCGTTCTTGAATGCCTCTTCATTGTAGGAGTATCCAACCACTTCTCCCACAAACCAGATGTGATCCCCGTAATCTCTTTCATCTATAACCTTACATTCTATGTTGGCCAATGCCTCCTTTATGCTTGGAACGCTCACGTTCTTTGAGGGAATCAGGGTTATGTTCATCTCCTTTAGCTTTGCAGGTCCCTTCTTTGTCCCAGCAATCCAGACATCTCTAAGCATGTCAAGGCTTGGAACGCTGATTACAAACTCCTTATACTTCTTTATTAGTCCATGAGTTGTTCTTTGAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAATAAGACCAAAATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: R [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 5 678223-681278 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023154.1 Pyrococcus furiosus DSM 3638 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 678223 30 100.0 37 .............................. AGTGAAGAATTTGACGTACAAATGTCCTTAGTGGAAC 678290 30 100.0 37 .............................. TGATGTAGATCTCTGTACCTTTCGGGACCTGTAGGTC 678357 30 100.0 39 .............................. CAGTTCTACTTTGATAAGACTGTGGTGGTTAATGGTAAA 678426 30 100.0 37 .............................. CTCTTATGGTGAAGCTTTCGACATTTTCTTTGGATGT 678493 30 100.0 37 .............................. CGTCTTCTCTGAGATTCTTGGCTCGTTCTAGAGCCAT 678560 30 100.0 37 .............................. GAGAGTATCAGGAGCTTTCTGACCTCCTTATACAGCT 678627 30 100.0 38 .............................. GACAAAGAACTCCCTAGCGTCCCTCCCCGTGTACTTGA 678695 30 100.0 37 .............................. CCACACTTCTATCTCAGCACCCCCAAACGTGAAACTG 678762 30 100.0 36 .............................. TTCTGCCGTCCCTTTTCTCGACGAACCTCATACCGA 678828 30 100.0 39 .............................. TTGAGGAGATGCTTACTGCGGTTAAAAAGGACATTGCAG 678897 30 100.0 37 .............................. GGTGCTTGAGCTCGCTAGTGCCCTCCTCCTGGGCTAT 678964 30 100.0 38 .............................. TAATGCTGTACAGGATTGACAAGGAGGCTTACGCTTCT 679032 30 100.0 37 .............................. TACTATAGGCGGAACTCCCTGCAATGAAAAATTTTTG 679099 30 100.0 37 .............................. GCACCTTCTTCACCATCGCCGTCTGGATTGCTGGTAG 679166 30 100.0 37 .............................. TGTTTTCGAATATTGTTACTTCTTGTGTATCTCTGAA 679233 30 100.0 37 .............................. ATTCACTGGGTTCTTCAGAAAGTTCATAAATTCACCG 679300 30 100.0 34 .............................. CCTTCTTCTTTTTAAATTTTTTAATTTTCATTAA 679364 30 100.0 41 .............................. TGATCTAGGCGTCGGGTAATTCTGTAAGGTCTCTGGCTCAT 679435 30 100.0 43 .............................. ATGACTATCAGGATGATAATCGTTTTTTTATGCTCGCTTACAA 679508 30 100.0 37 .............................. ACAGGCAATTAGAAACTCTTTCAAAAACGCAGTTCAG 679575 30 100.0 37 .............................. TAGTGTAACAACATCATATGGAAAGTCTCCCACGTTG 679642 30 100.0 38 .............................. GGGTTTACTCCGAACGGTGTTCTGCTAACTGATATAGT 679710 30 100.0 36 .............................. ACTTAGCCACCTCCGAGATGTTTTCGTAATAGTTAT 679776 30 100.0 37 .............................. TTGTAGGCTCGTGGACTTGGCTTCCACACAACTAATT 679843 30 100.0 37 .............................. CTTCTTCTCTTACAAAGTCTTCAATGATAGTAAATAT 679910 30 100.0 38 .............................. TGGGGTCTCGTCGCAATCGGTGCAGTATTCCTAAGCCT 679978 30 100.0 36 .............................. GCAATTGGGCTTTTTGTAGCTGGAATCTTGGGTGAT 680044 30 100.0 36 .............................. AAAGATTCTGATTCCCGAAAGGCTTTTTCCGACACC 680110 30 100.0 37 .............................. TCACCATTACCTCCTAATCCAATCATCTAACATTGAA 680177 30 100.0 38 .............................. TAACTCTAATGTTTCATCGACTAACATGTCAATTTCAT 680245 30 100.0 38 .............................. TTGGATTTGCTACTCTCACGTATAGGGTCCCTACCTCT 680313 30 100.0 35 .............................. TGATATAGTCGTCTGCTCCTGATACCCAATATATG 680378 30 100.0 37 .............................. AGGAGGCTCTAGATGAGCTAATCAGCGCAGAAGGTGG 680445 30 100.0 35 .............................. ACCACCCCTGGGAAAGGCCTTATGGTACTACCTAA 680510 30 100.0 35 .............................. CTTAAAAATACTACCCTCAACAATCAATATTGCAA 680575 30 100.0 36 .............................. AACCTCCCTAAGCCTGTCCTTCCAAGTGAACTTATA 680641 30 100.0 37 .............................. CTCTCTTACTTCTATAAGACTGAAACTTCACACCTAA 680708 30 100.0 38 .............................. TAACGCTTATTTCACCCTGCTTAACACTCTTAACCCCA 680776 30 100.0 37 .............................. ACATCCCTACATAATAATACGCCACTTGTCCAAAAAC 680843 30 100.0 36 .............................. ATCTCCATCATACCAATGCTGTGCAAAATCAATCTT 680909 30 100.0 40 .............................. TTGAAAAGGTTGGGTGATAGGGTTAAGGAGGAGTTAGTGA 680979 30 100.0 39 .............................. TAAACTTAAGCTGGGATGGGCTATATACAAAGACAGACA 681048 30 100.0 38 .............................. GAGATAGAGCTGGTTTTACGTTATGGCAAAATCTTAGA 681116 30 100.0 36 .............................. TGGTTCATACAATTCTGGAAGGTTGTAGAAACCAAC 681182 30 96.7 37 ...C.......................... GATGCCCAAACCTGAATATACCCCGCACTAACTAAGT 681249 30 90.0 0 ...C...........C..A........... | ========== ====== ====== ====== ============================== =========================================== ================== 46 30 99.7 37 GTTACAATAAGACTAAAATAGAATTGAAAG # Left flank : TTGCAAGATGGTATGGAGCACCTTATGAGTGAAGATTTTTCGGCACACGGTATTTGGGCTTATTTTTGAATTTTTAGTCTTCTTTGAGCTTTATTTTTGAAATAAAGGTTTTTGGGCGATTAGGGTTTAATTTAGTAACTCAAAGTTAGTATTTTCCTTGTGTTATAGTTTTACTATTTACTTGTGACGAAAGTTTTTCGAAAATTTTTGAATACCATGATAAAGACAAATTTTTGGAAAAAGTTTGAGGGATCCTGTTGGATTCTTGTGAAGAGTTAAGAATTCGCCCAGTTAGTCTAGTTAAGTCTTCTCCTGGGATAGGGTGTGAAAGTAGTGTTTTATTCCCAGGGTGCTTGTGGGAGTATTCTTGGTTTAAAGTCTTAAGGGGAGTTGGTTTGTTTATAAATAAGGGGTTCTGGGGTAAGTTGGATGCCCCGTAAGGGTTATAAATTCAAGTGATATAATTACTCCATAGGAGTATTGGGGCGAAAAAGCCCCCT # Right flank : GTTCTTGGTCCAGATGGTATTGCAGATAAGGACGGAGATGGAATTATTGCAGGTGATCCGGACGATGACGCTGCAGAAGTCATAAGTATGTCCCTAGGAGGATCTGCAGATGATACTTACCTTCACGAGATCATTAAGAAGGCCTACGAAGCGGGAATAGTTATAGTTGCAGCGGCTGGCAATGAAGGAGCCTCTAGCCCAAGTTATCCAGCAGCCTATCCTGAAGTAATTGCAGTAGGGGCTACTGATATAAATGACCAAGTCCCGTACTGGAGCAATCGTCAGCCAGAAGTTAGCGCTCCAGGTGTTGATATACTTAGCACTTATCCAGACGACACTTATGAAACTCTTTCAGGTACAAGTATGGCAACTCCTCACGTAAGTGGTGTTGTTGCGCTAATTCAAGCTGCATACTATCTCAAGTACGGCAAAGTACTTCCAGTTGGAACATTTGACGATATGAGTACCAATACAGTTAGAGGAATTCTGCACTTGGCAGT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAATAAGACTAAAATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: F [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 6 1048874-1046372 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023154.1 Pyrococcus furiosus DSM 3638 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================================== ================== 1048873 30 100.0 37 .............................. TTGTAGTATGCGGTCCTTGCGGCTGAGAGCACTTCAG 1048806 30 100.0 37 .............................. TCGTTATCTCTTACGAAGTCTTCGATTAGTGAAAACA 1048739 30 100.0 37 .............................. AGGAGGTGGGACAATGACAGACATTGAAAAAATATTG 1048672 30 100.0 37 .............................. TATCTATTGTACAGGTACTTGTTACACGTGAGTGCAA 1048605 30 100.0 38 .............................. AACTATCTTAATTCCCGATATTGTTCTTCCCACGCCTT 1048537 30 100.0 37 .............................. TTAAACTTTTCGTTCCTTGTTATTATCCTACGAACTC 1048470 30 100.0 40 .............................. TGACTGCCTCCCTCAGAACCTTAATGATATCCACTGGCAA 1048400 30 100.0 37 .............................. TTTTCCGTTTTTGACAAAATTTCTGTTCTCTGCCACT 1048333 30 100.0 49 .............................. AACTTCGATCGCTGAAGCTCTGACATTTAATCTTATAGATATTCCTACA 1048254 30 100.0 49 .............................. CTGGAACTTGGCAAACGTAAAGGTGTGTTTCCACTGGAGCAAGTGGAGA 1048175 30 100.0 39 .............................. GAGCTCTACCCATACGCAATAGAGTGGCTTAAGTTCAAG 1048106 30 100.0 37 .............................. TTTCATTTCTTCCATCTCCCACCTCCTTGTTACTTCT 1048039 30 100.0 39 .............................. GACTCAAAAACCTCAAAAACAAATCGGAGGTTGGGGGAA 1047970 30 100.0 37 .............................. CTAATCTTCTGTATCTTCTACCCTCCATCTTACCCAA 1047903 30 100.0 36 .............................. ATCGCAGTAATTTGGGTTGACAGGGGAGCTATAGAA 1047837 30 100.0 34 .............................. TAAGTTCTTTTACAGAAGCCTTAACCTTTTGATA 1047773 30 100.0 37 .............................. CAACAATGATTGCATACACATATTACAAACATTTACA 1047706 30 100.0 37 .............................. GGAGTTGGGATTCTATGAGGATTTAGCCAATCACTTA 1047639 30 100.0 38 .............................. GAGTTTCCAATGATGATCACCCCGAGCTCTCGCTCGGG 1047571 30 100.0 34 .............................. TAAGTTCTTTTACAGAAGCCTTAACCTTTTGATA 1047507 30 100.0 39 .............................. TTGGCCAAAAAGTGAAAGGCGCATTGGAGTGGGTGGCCA 1047438 30 100.0 37 .............................. TTAACCTCCTTGGCTGGTTTAGAGGGAGCCTTCCTCG 1047371 30 100.0 37 .............................. TTTGCTGGCTTCATCTGTCTGGAGGAACTTAATTGGC 1047304 30 100.0 40 .............................. AGGGTACAGAAGTTTACGTGAAGGCAGAGAATGCTGGAAG 1047234 30 100.0 37 .............................. GAAGAAGGGCTACAAAGTTCTAAGGGACTACGGGGAC 1047167 30 100.0 38 .............................. TCAAGAGTTCTATCCTGCTTCACAACACCCATATAAGG 1047099 30 100.0 37 .............................. ACGATGGGAAGTACTACTACGAGGGGAGGGTTGTAGC 1047032 30 100.0 45 .............................. GGACTTTAGATATGTTGTTGTTATTGTATAAGTCTCTAAAGTCAG 1046957 30 100.0 37 .............................. TTATCTAAGCTCTGCTTAAATGGGAAAATCTTATAAG 1046890 30 100.0 59 .............................. CTTTTTGCGGGCGATGACGGGGGGTGGGCTCTACTATGCCGTTGGCAAACAACTTCCTG 1046801 30 100.0 38 .............................. ACATAAGACGTGTGGCCGTCGAAGTACCTTATTCTCCT 1046733 30 100.0 37 .............................. GCTGTCATCTACCCGGATCTCAGCGAGGTAGGCCGTG 1046666 30 100.0 35 .............................. TTCCTTATCATTTCTACTGCAACTCTATCTCCAAA 1046601 30 100.0 37 .............................. TGTGAAACGCTAATAGCTGTTATTCTAACCTCTCTTC 1046534 30 100.0 37 .............................. TAGAATTATAGATGAAGAAGTAGTAGTGAAGTCAACT 1046467 30 100.0 36 .............................. GAGTTGTGTCAAGAGGATGATTAGGTAGAGCCTCCG 1046401 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =========================================================== ================== 37 30 100.0 39 GTTCCAATAAGACTACAAAAGAATTGAAAG # Left flank : AGACAACTACAATGTACATGTGAAACACCCAAAAATTTTTCGATACACGCTAATTTAACTTTTTTCCCAAAAATATCTATGAAAAAGTTAGAAAATTGAAAATAAAGGTTTTTGAGGGATTAGGGTTTGATTTAGTAACTCAAAGTTAGTATTTTCCTTGTGTTATAGTTTTACTATTTACTTGTTACGAAAGTTTTTCGAAAACTATCGAATAATATTTTAAGAGGAGATTTTTGGAAAGAGTTTGAGGGATTCTGTTGAATTCTTGTGAAGAGCTAAGAATTCGCCCAGTTAATCTAGTTAAGTCTTCTCCTGGGATAGGGTGTGAAAGCAGTGTTTTATTCCCAGGGTGCTCGTGGGAGTTTTCTTGATTTAAAGTCCCAGGGGGAGTTGGTTTGTTTATAAATGGGGGGTTCTGGGGTAAGGTTGATGCCCCGTAAGGCTTATAAATTCGAGTGATGTAGTTACTCCGTAGGAGGATTGGGGCAAAAAAGCCCCCT # Right flank : TTTGGACTTCATTCACAAAACGTCTCGATTATTCTCTGAATTATCTTACTTGTCTTTGCCCTATCGGACTTATACAAGTAGGGCAACCTGATAACCTCCGCATTTATTCCCTCTTTTCTGAGCCTCTTCTTTAACTCCTCGCAACTAAAATCTTGATCTGGTCCCAAGGCTATTACGTCCGGCTTCAGCCTTTTTATCAAATCTATACTTATTTCACCCGGTTCTCCAATCACAACATCATCCACATACCTAATACTCTTGAGCAGTTCTGCCCTGTCTTCAGCTGGATTAATAGGAGGTCTTCCTTTTCTCCTCTTCACGGTTTCATCATGGGCAACAATAACTATTAACTCATCACCCAACTCCTTAGCCATCTTCAAAAAGTGGACATGGCCGACGTGGAGGATGTCGAAAACACCTCCCACCACAACCCTTACCTTGCGGTTATCTCCCATATCTTATCCCTCGCGTGGTGGATGACTTTCACTGCCTTTCCCCTG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTACAAAAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: R [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 7 1075186-1074416 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023154.1 Pyrococcus furiosus DSM 3638 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 1075185 30 100.0 37 .............................. TGCCGAAGCAAATAGCTGCTCCACACACAGTCTTTGA 1075118 30 100.0 37 .............................. GGAAGAAATGCAGACGACGTGATAAACTACGTGAAAA 1075051 30 100.0 38 .............................. CGGTGGAACTCGTGCACTAAGGCACCATACGCCCAAAC 1074983 30 100.0 37 .............................. TGAGCTTCAACCTTCCATTGAACTCTATGAGCTTCCG 1074916 30 100.0 38 .............................. GGACCTCTTTCATAATCCTCAGGGCGTCCTCGTAGCCC 1074848 30 96.7 36 .............................C TTGCCCAACCTCTCTAGAAACGCCCACCTTTGTTAC 1074782 30 96.7 37 .............................C GCAAATCTCTTTTTAAATCTTTGAGAACGTCTTCGGG 1074715 30 93.3 37 ...A.........................T AAAGATACAAGAAACGCCTTCTCCGTCTCAACCTTAA 1074648 30 93.3 36 ...A.........................C GAGAATACTGCACCCACTCGTCGTGAACTCTACTGG 1074582 30 93.3 40 ...A.........................G GGGACTATGCTGGGAGAATCTGCAGGGTTTTTAACCGTAG 1074512 30 90.0 37 ...T........................AG AACATAGGGAAGGGATTTTATTACATTGAGCTTTCAA 1074445 30 90.0 0 .......C.......A...........G.. | ========== ====== ====== ====== ============================== ======================================== ================== 12 30 96.1 37 GTTCCAATAAGACTACAAAAGAATTGAAGA # Left flank : TGAAAAGGCTAGGTTAGAGTGAAGTTTTTGAAATTTTTTCGGTACACGTTGATCGGGTTTCTTTTTTGGTTTTTTAGTTTTCTAAGGGCGTAATTTTTGAATTGGAGGTTTTGGAGAAGCTAGGGTTTAATTTAGTCACTTGAAGTTATTATTTGCTTTGTGTTACACTTTCATTGTTAAATTGTAACGAAATTTTTTCGATGAGTTTTTATTAAAGTGTTAGAGGATTGTTTTTTGAATTTGCTTGAGGTTTTTTGTTGGATTCTTGTAAAAAGGCAGGAATTAGCTCAATTCAATCATTGAAGCTTGTTCGTTGAATAGGGTTTGGTAAGGGGTATTTGTAATCGGCTAGTTTTTTGGTTTGTTTTTGGTTTAAAGGGTTGTAATGGTTTGTTTTGTTTATAAATGGGGGGTTGTGGGGGAAGGTGGATGTCCCGTAAGGCTTATAAATTCGAGTGATATAATTACCCCAATGGGGAATTAGGGCAAAAAAGCCCACT # Right flank : CTTATTTCATTAAACCTTGGCCCTTAAATGTTTTACTTTGAAACTTCAATTTTTTGGAAAGTTTCTTGTAAGAACGTGTAGATAAGGTTTATAATTTCCCCTACCTTTGGGTTAGCTTGAGAGGTGAGGCATATGAAGAAAATAAGACAACCCATCATTGCAGTTCTAGGTCACGTTGACCACGGAAAATGTCTTCTTCCAGAAGAAAAAGTTGTTTTACCAGAGATTGGACTTGTTACACTGAGAGAACTCTTCGAGCTGGCAAATGAAGTTGTGGTGAAGGATGAGGAGAAGGAAGTTAGAAAGCTGGGGAAGATGTTAACAGGTGTAGATGAAAGAGGAAATGTCAAGCTTCTCAATGCCCTCTACGTGTGGAGAGTTGCACACAAAGGTGAGATGATTAGGGTTAAGGTCAATGGATGGTATTCAGTTACCGTAACTCCTGAGCATCCATTCTTAACTAATAGGGGGTGGGTAAAAGCTGGTGAGCTCAAGGAAGG # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTACAAAAGAATTGAAGA # Alternate repeat : GTTACAATAAGACTACAAAAGAATTGAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: R [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], //