Array 1 29644-27924 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDKO01000018.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM134, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 29643 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 29582 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 29521 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 29460 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 29399 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 29338 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 29277 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 29216 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 29155 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 29094 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 29033 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 28972 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 28911 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 28850 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 28789 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 28728 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 28667 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 28605 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 28502 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 28441 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 28380 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 28319 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 28258 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 28197 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 28136 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 28075 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 28014 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 27953 29 96.6 0 A............................ | A [27926] ========== ====== ====== ====== ============================= ========================================================================== ================== 28 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7756-6263 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDKO01000218.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM134, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 7755 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 7694 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 7633 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 7572 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 7511 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 7450 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 7389 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 7328 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 7267 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 7206 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 7145 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 7084 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 7023 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 6962 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 6901 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 6840 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 6778 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 6717 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 6656 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 6595 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 6534 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 6473 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 6412 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 6351 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 6290 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //