Array 1 326625-327013 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRKU01000003.1 Cronobacter sakazakii strain cro814W1 contig3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 326625 28 100.0 33 ............................ AACTATTGCCAGGAGGTTTTATGACGCGCCAGT 326686 28 100.0 32 ............................ GCAATTATCGACGAACATCGCGCGCTGTCCGG 326746 28 100.0 32 ............................ GCTGACAGATTTTGTCACTGTTAAAGCCGGTA 326806 28 100.0 32 ............................ ATCATGGATAACGAATTAAAGAACCTGCGCCT 326866 28 100.0 32 ............................ AGAAATCCGGTGAGCGCACTCTGAATATTTCC 326926 28 100.0 32 ............................ AGGGAGGACACGCGGCGGCCGTCAACGTAGCG 326986 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 7 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTATTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGGATAACGGCCTGTTTCAGGCGATGTTGTACGAACATCATCGACCAGAAAGCAGTAGAAAAATCTCTCTATACGATACGGCAATCGCGCGAGTTAACGCACCGAAGAGCAAACCACTGAACGAATGAAACGATAAAAGTGATGGGCGTTGCGCCAGGACGTCTAAACCCTTTTTTATGCTCCGCTTGTAAAGCGTTGATTTTTAATGCGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCGTTAAAAGCAAAAATTTGTTTTCAATTCAGGCATTCCGGTAATATTCGCTCCT # Right flank : TGCAAAGTGTGAGCGCCGTCGGAACGGCGCATTTTTCAGAAGAGGCTTAGGGCGAAGCGGATTAGCGGAAGCGCTCATCGCGCCCGTGCGGCTCATTAAGATCCTGCCAGGGGCCGATGGAGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 36-1528 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRKU01000004.1 Cronobacter sakazakii strain cro814W1 contig4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 36 29 100.0 33 ............................. CAATGAGCACAGAACCGGCCTGGCTGGCGAAAG 98 29 100.0 32 ............................. GAATTTTGCCCCGTCATTGCCTATGCCATAAA 159 29 100.0 32 ............................. ATGACATAGACGAATACCGCCCCATTTTTCAT 220 29 100.0 32 ............................. CAACAGCTTGAGCCGGAAGGGCTTAAGACGTT 281 29 100.0 32 ............................. CCTGCCAGATGAGCGCTTGGGCTACTTCGACT 342 29 100.0 32 ............................. TTACTGAGTTGCTAGGCAATCCGAATAGTTCA 403 29 100.0 32 ............................. CAGGTAGAGATGCTCTATTCCTGCCTGCCCGC 464 29 100.0 32 ............................. AAAGCCGGGTTGATGAATTGTTGCAATTGGGG 525 29 100.0 32 ............................. CTTGGAAACGGCTTTGCGCATCTGGTCTTTGG 586 29 100.0 32 ............................. GCCCTTCTCGGTAATCCGCAGGGCGGATCATA 647 29 100.0 31 ............................. CCCGGAATTATCGTTTCCACAAAAATATTTT 707 29 100.0 32 ............................. CATCTTGTGACGGCGATATATCAGCGCTTGAG 768 29 100.0 32 ............................. GTGGGCTGGCAGATTTCATGCCTCCAGATCAG 829 29 100.0 32 ............................. AAACGGGAACAGTTCAACGGCAAGCCGCACCA 890 29 100.0 32 ............................. TATGGTTTGTTTTTAACCCCTTCTTCCTGACG 951 29 100.0 32 ............................. CCGTCACCCTTAGCTCCAAAATCTTTGACGCT 1012 29 96.6 32 .................A........... AGGCGCGATTCAGCGTCCCGCTGTGGTATTCG 1073 29 100.0 32 ............................. AACATAGAGAACGCGGCACAGAAGAGTTTCCG 1134 29 100.0 32 ............................. ATTGGGCGTTAACGTCGCTAAATTATCCTGAG 1195 29 96.6 32 ............................T TCCATCGTGTCTCTGATGAATGCGCGCGCAGT 1256 29 93.1 32 ............T...............A GTAAAGCCCATTGTTCCAGCGTTGTTTTATGC 1317 29 93.1 32 .A..........T................ CGAAAGGGCAGTATACGGTTATGCTTCAAGAG 1378 29 93.1 32 .A..........T................ GACGCATTTGGCGACGACGCAGAACCTGGGCT 1439 29 100.0 32 ............................. CTTGCCTGGCAGGGCAGATTGATATCATAAGC 1500 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.9 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : CCGGTAAATCGGGTTGTTCGGCAGGCGCACCGGATG # Right flank : GTTGTTGAGTAGAATCGCCTGCCTTGGTGGGTGCGCTTCGCTTACCCACCCTACATATAAACTGGCGGGCTTGCCCTTAACCGATCCACAAAAACTTCCCGTGCCAGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCGGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCCTAAGTCCTTTTTTCAGCTTTATCCTGGTGATGAAACATCATAAGAGGTGTATCAACTCATCCTGGATACGAGCGGCCTTTGGCTGCTAATATCAGGTGCGGTTATTTACTATAACGTTTATGTTTTCATTTATGAGCACTCAGAAATGGATAATTCACTCAGGCGATTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 220-34 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRKU01000007.1 Cronobacter sakazakii strain cro814W1 contig7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ============================ ================== 219 26 100.0 28 .......................... GACAAGATGAGACGTGAGATAACATGTT 165 26 100.0 27 .......................... TACAAATAATCGATGAGATAACCGGTT 112 26 96.2 27 ............T............. TACAAATAAGCGGCGAGAAAACCGGCT 59 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== ============================ ================== 4 26 99.0 28 GGTGGGTGCGCTGCGCTTACCCACCC # Left flank : TGGCGACATTCTGAGCGTGATTGACGCCATTGCGTTCCAGACCAATATCCTCGCGCTGAACGCGGCGGTGGAAGCGGCGCGCGCGGGTGAGCAGGGGCGCGGGTTTGCGGTGGTGGCGGGTGAAGTGCGTACGCTCGCGAGCCGCAGCGCCGAGGCGGCGAAGGAGATCCGCGCGCTTATCAGCAATTCACAAAGCCAGGTGGGCGAGGGCAGCGAGCTGGCCATGCAGGCCGGTGAGACAATGGATGAGATTGCCGAAGAAGTATTGCGGATGACGAAGCTGGTGCGCGAAATCGCCGACGCGTCGCTGGAGCAGAGCCGCGGTATTGAGCAGGTGAATATCGCCGTGAGCCAGATGGACGAAACCGCCCAGCAGAACGCGGCGCTGGTGCAGCAATCCTCCGCCGCCACCCGTTCGCTGGAAGAGCAGGCGCAGCAACTGGTGGAAGCGATGGCGTCGTTCCGGTTGCAGACGGCAGGTTAAGTTTTCGCTGAAAACC # Right flank : CTACAAATAAGCGGCGAGAAAACCGGCTGGTGGG # Questionable array : NO Score: 2.50 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.10, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTGGGTGCGCTGCGCTTACCCACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.90,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 299-26 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRKU01000014.1 Cronobacter sakazakii strain cro814W1 contig14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 298 29 100.0 32 ............................. CGATCCCGCCATTTTGCTCGGGTAGTGCCGTT 237 29 100.0 32 ............................. GTCGTCCGGGCACCATTCGCCAGGCGTAGCAG 176 29 100.0 32 ............................. TCATCGGCCAGGCGTTTGATCGCTTCTAACTG 115 29 100.0 32 ............................. CCCCAAATAACACGTTACCGAACGACCGTTAA 54 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTCGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCGTGGGCTACGAATAATGAATCCGGCTTCGATTTCCAGACGTACGGTGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAGATACAAGTATATAGTTTTAGA # Right flank : GCTTGAGCGCACTGGTATTCGCTCCA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [18.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 27422-26661 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRKU01000014.1 Cronobacter sakazakii strain cro814W1 contig14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 27421 29 100.0 32 ............................. CTGCATCGCGAGGAATCTGGCAGCCTGAGCTT 27360 29 100.0 32 ............................. GCGAGCGAATTATCGCAGGGGCAATTGGTGTT 27299 29 100.0 32 ............................. TATAGCAGCCTGAATACAATCAGCAAGATTTG 27238 29 100.0 32 ............................. CCCAGACTGAAACTCGCAGGTCGTGAACATCA 27177 29 100.0 32 ............................. CAGCTCAGTGGCTGCGCAACCTGATAGCCGCC 27116 29 100.0 32 ............................. TGAACTACATTACGAACGCAACGACAGTGCAA 27055 29 100.0 32 ............................. CACCTGGCGACGTGTTACTGTTAGGGGCTACT 26994 29 96.6 32 .T........................... TTGGCTTGAAATCGTTGCGGCCACAACAGAGC 26933 29 96.6 32 .T........................... CCTGCGGCGCTTGTTGCGCGGGAACGCGTCCG 26872 29 96.6 32 .T........................... ATATGGGGGCAATCAATGGCGGCAAAGCATGG 26811 29 96.6 32 .T........................... CAGGCCGCGCGCCTGGCGCAGATGGAGCGCCA 26750 29 93.1 32 .T.......................G... GCGGTGCCGCATGACCGACACAGCAAAACTGA 26689 29 93.1 0 .T....................C...... | ========== ====== ====== ====== ============================= ================================ ================== 13 29 97.9 32 CCGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCAAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTGACGAGCCAGGTGAAGCAGTTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACTTTCGTGTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAATAGCGGCGCGTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAGAGGGTTACCGTTAGT # Right flank : AACGCTGACCTGGCGAACACGCTGCAAAATCTCCGTTTCCCGCCAGCCGTAATAAACCGCCCAGGCTCTTCGCGTCTGTCACTCGCCGCCCCCTTTCCCGCCACATTCTTCAGTAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGTGCGCTGTACGATGGCTTCAGTAAAGGGCTGCACGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCACCCTGGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGACGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCATGCGGGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.60,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //