Array 1 107225-106359 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRGT01000009.1 Salmonella enterica subsp. enterica serovar Typhimurium strain S23 contig_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 107224 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 107163 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 107102 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 107041 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 106979 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106876 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106815 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106754 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106693 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 106632 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 106571 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106510 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106449 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106388 29 100.0 0 ............................. | A [106361] ========== ====== ====== ====== ============================= ========================================================================== ================== 14 29 99.8 35 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGCCAGCGGGGATAAACCGTGGATTATCTGTATTTTACGGAAGTGGGCGC # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.21, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 872-49 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRGT01000020.1 Salmonella enterica subsp. enterica serovar Typhimurium strain S23 contig_20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 871 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 810 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 749 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 688 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 627 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 566 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 505 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 443 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 382 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 321 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 260 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 199 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 138 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 77 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================= ================== 14 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TGAGGCGTACAGGCTGTTAGATGAGAAATTACCGTGTTCCCCGCGCCAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 18496-17003 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRGT01000020.1 Salmonella enterica subsp. enterica serovar Typhimurium strain S23 contig_20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 18495 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 18434 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 18373 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 18312 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 18251 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 18190 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 18129 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 18068 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 18007 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 17946 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 17885 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 17824 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 17763 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 17702 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 17641 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 17580 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 17518 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 17457 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 17396 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 17335 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 17274 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 17213 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 17152 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 17091 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 17030 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //