Array 1 31959-30295 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCIV01000040.1 Salmonella enterica subsp. enterica serovar Heidelberg strain PRK695 HEIDELBERG_S16_trimmed_contig_41, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 31958 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 31897 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 31836 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 31775 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 31708 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 31647 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 31586 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 31525 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 31464 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 31403 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 31342 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 31281 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 31220 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 31159 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 31098 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 31037 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 30976 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 30915 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 30854 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 30751 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 30690 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 30629 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 30568 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 30507 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 30446 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 30385 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 30324 29 96.6 0 A............................ | A [30297] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7311-6185 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCIV01000084.1 Salmonella enterica subsp. enterica serovar Heidelberg strain PRK695 HEIDELBERG_S16_trimmed_contig_88, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7310 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 7249 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 7188 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 7127 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 7066 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 7005 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 6944 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 6883 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 6822 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 6761 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 6700 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 6639 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 6578 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 6517 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 6456 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 6395 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 6334 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 6273 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 6212 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //