Array 1 575406-576167 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIHJC010000002.1 Escherichia coli strain R1391 contig00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 575406 29 100.0 32 ............................. GCCTGCTCGTGAGTCCGCGGCGCGAACTGCCG 575467 29 100.0 32 ............................. ACGGCGCGTTCTTGAGTTCTGTATACTGCTCG 575528 29 100.0 32 ............................. GAATGTGGGGCGCTGCTTCATCGTCAAATTAT 575589 29 100.0 32 ............................. ATGGAAACCCGTCGCCTGGTTAAACAGGTTAT 575650 29 100.0 32 ............................. GAACTCCCTGCCACAAATCCCGAAGTGGACGC 575711 29 100.0 32 ............................. CTGGCGGCGTTTCAAATGAGGCTGGAGGCATT 575772 29 100.0 32 ............................. AAATTTGCCGGTAATCGGGTGCTTGTATCGCC 575833 29 100.0 33 ............................. ATCACCCCGAGCGTGACGCCGTTCGCCGCGTGC 575895 29 100.0 32 ............................. CTGCGGGCCTGAACGGCGAAAATGTTGGTGAC 575956 29 100.0 32 ............................. GCCAGCGGCGCTGAGTACGACGACCTGATTAA 576017 29 100.0 32 ............................. GACGATGAGACGCCCTGGTGTGCCGCGTTCGT 576078 29 100.0 32 ............................. CGTTTAGCTCCGCAATGTTGGATATCACTGAT 576139 29 89.7 0 ...........A........A.......A | ========== ====== ====== ====== ============================= ================================= ================== 13 29 99.2 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAATTGCTTGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATTACACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTCTTTGTCGCCTCTAAAAAACCTCCATTTTGCCCATCCTGGACTAATCATTATCATTTTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTACGTCGGAGTTTGGTGGATTTTAGTCGGTATAGAATTACTTTAAATATTTGGCTTTTCAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGTTTCTGTTAAGTTGGTAGATTGTGACTGACTTAAAAAATCAATAATTAATAATAGGTTATGTTTAGT # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTATTAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGCTCTCCATATATGAGAAGTTCACAATTATCGATACAAAAAATCAAATTTAATCAAAGTGTTATTTGTATAATCCTTAAACCGTTAAGAAATTTTAACATATTATTTTTTTAATATTAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAATCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 601848-603706 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIHJC010000002.1 Escherichia coli strain R1391 contig00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 601848 29 100.0 32 ............................. TTCTCGACCGTTGCCCGTCACCGAAAAAAATC 601909 29 100.0 32 ............................. CTGCTGCTGATCCCGTTTGCGGCGTGATATAC 601970 29 100.0 32 ............................. ATGAAGGACGCTGGCAAAACAACGACAACCCC 602031 29 100.0 32 ............................. TCTCGCGGTTTACGGGCGAACCCGCGTTACTA 602092 29 100.0 32 ............................. GTGGGCGACCGCCGCCAGTTGGAGCTGGCGAC 602153 29 100.0 32 ............................. GATCGTGGGGTGGATGTGTTGCCACTGAGTCG 602214 29 100.0 32 ............................. TCTTGGTTAACACAATACTGAGGGCTTGATGT 602275 29 100.0 32 ............................. CGGGATAATTCAGCTTTCACATCACGGCAAGA 602336 29 100.0 32 ............................. GCATCTCTTCCACTTAAATCTCCTTGTTACGA 602397 29 100.0 32 ............................. GATTTACACATTGACCTAAACCGGATTCTATT 602458 29 100.0 32 ............................. TTGGCTAGATTAACGTGAATAGTATAAACAGC 602519 29 100.0 32 ............................. GGTTATTCAGGATGCCTTTAAGCCCATTCCCA 602580 29 100.0 32 ............................. GATATAGAGCGGGTACTCGAGCGGAGCGGGGA 602641 29 100.0 32 ............................. CCTTTTACTGGCGATTTGTGGAACTTGGCACC 602702 29 100.0 32 ............................. GAACTCCCTGCCACAAATCCCGAAGTGGACGC 602763 29 100.0 32 ............................. CGTGATTGTTGGGATCTCATTCAGCCCGAGAT 602824 29 100.0 32 ............................. TTGACGCCAGCGGCGACCCGCGTCACGGCTTA 602885 29 100.0 32 ............................. GGATCAAATCTTTTGAGAGCAATTAAGGGGGA 602946 29 100.0 32 ............................. TTTATGTGGAGTATCAGTGCCTGGGTGGAAAG 603007 29 100.0 32 ............................. TGGGGCTGAGCATGGCTAAACAACCGAGGCGC 603068 29 100.0 32 ............................. GTCAACTGGCACCACAGGATGATGGCGGCGAA 603129 29 96.6 32 ............C................ CAGGCGCTCGACGCGGCACGCAGTCGGGCACA 603190 29 96.6 32 ............C................ CAGGTCGACCGACTGGAGGCGGAGATTGTCGG 603251 29 96.6 32 ............C................ TGTTGTTTTTCTGCCGGATTAACGCGGTGCGA 603312 29 96.6 32 ............C................ TTTACGTGTTATCGCGCACCGGCGACGGTGTG 603373 29 96.6 32 ............C................ GTGATGAGGAAAAGCTAATAGAATGGCGACGC 603434 29 96.6 32 ............C................ GTCCACGGTTCGACGCCTACCGCCGCAGCTAT 603495 29 96.6 32 ............C................ GCCGTCGTGCCGTGTTCACCTTTACGAACCTG 603556 29 96.6 32 ............C................ TTGTCGGGCTTGTTCGGCGCGGGTTGTTAACT 603617 29 96.6 32 ............C................ CCGGCGAAGGACTTGCTCGTGTGGTTAAAGCC 603678 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.0 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGCGATAGCGGTCACCGGGGACGCGGCGGATGAGTATGGTCGTCGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCGATCTGGCTCCTGGAAGTGCGTGCCGGTGTTTATGTCGGAGATACGTCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGGTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCTGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGACGCACTGGATGCGATGATGGACATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAGCTCTCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACGCCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //