Array 1 45107-46712 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSUD01000004.1 Ligilactobacillus salivarius strain FXJWS6M4_2 Scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================== ================== 45107 36 100.0 30 .................................... GACCGACAGCAATCAGCAACACTGTCATCA 45173 36 100.0 30 .................................... CATGGCCGTAATCAGGGTACCTTCGGTAAA 45239 36 100.0 30 .................................... GTTTGTGACACATCAAAGACGGGTAGATAG 45305 36 100.0 30 .................................... AGATTGGTCTTGGTGCATCTGGTTCTTTTC 45371 36 100.0 30 .................................... TGCTTTTTCATGGTTTTGGTTCGTTCACGC 45437 36 100.0 30 .................................... AGCACGTTTGAACAAGTACGCTAAGCAACG 45503 36 100.0 30 .................................... GACCGACAGCAATCAGCAACACTGTCATCA 45569 36 100.0 30 .................................... CATGGCCGTAATCAGGGTACCTTCGGTAAA 45635 36 100.0 30 .................................... GTTTGTGACACATCAAAGACGGGTAGATAG 45701 36 100.0 30 .................................... AGATTGGTCTTGGTGCATCTGGTTCTTTTC 45767 36 100.0 30 .................................... TGCTTTTTCATGGTTTTGGTTCGTTCACGC 45833 36 100.0 30 .................................... AGCACGTTTGAACAAGTACGCTAAGCAACG 45899 36 100.0 30 .................................... GTATGCAAATCTATAATGCTGCTTATTATA 45965 36 100.0 30 .................................... CCTACTTCTTTTTTATTAATCGCATTATTG 46031 36 100.0 30 .................................... GTATGCAAATCTATAATGCTGCTTATTATA 46097 36 100.0 30 .................................... CCTACTTCTTTTTTATTAATCGCATTATTG 46163 36 100.0 30 .................................... TTAACCATCGCTAACATTGGTCGAGCTACT 46229 36 100.0 30 .................................... AAACTGTTTTATTAACGCATTAATGAAGAA 46295 36 100.0 30 .................................... GAAATAAAAAAGCCCAGAGCATAAAGCCCT 46361 36 97.2 30 .....................G.............. TATCACAGAAAGTTCTCCAGCAACATTATT 46427 36 100.0 30 .................................... TATCACAGAAAGTTCTCCAGCAACATTATT 46493 36 94.4 82 ........................A..A........ ACAACTGGAGTTTGAGTACGTTTAGCTTGTGTTTCAGAAGTATGTTAAAAACCTATTATATGTTATAATATGAAAGTGTTTA 46611 36 83.3 30 .....G....T.........T.........G.T..T AGTAATTCACCGCTAGTTAAGTGGTTTTTT 46677 36 80.6 0 ..........A.........T...AG...CG..G.. | ========== ====== ====== ====== ==================================== ================================================================================== ================== 24 36 98.1 32 GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC # Left flank : AACAGACCGAATTAGTAAAAAGTATATGAATGTATTAATTAAGAAGATTATTGAAGACATCACAGACGATGAAAGACAAGCAATACTAAAATCAGTAAATAGTTTGTATGATCGTATTCGAGAGGTTTTGTATAAAATTGATATACCATTACAAGTAGATTATGACAATGATTTAACAAGACTATTTAAGTATTGTCAGGTACATACAGAGGCATTGCTATGGAAAAATGCGTATGATAGAATATCTTCAGATGTTAAATTGCATGTGGAACTAAATAGAGAAAGAATTATAGGTCTAACCAATGTCGCACATTATCTCACTAAAGAAGAGTTTCAGGAACTTGTAGGTCTTGTTAAGGCGACTAACTCATCAATGTTTATAATTGAATTCACAGAAAAGAATGGTCAGAGATTCTTTGAAAGCTGTGATAATTACTACATTGATGAGGATTATATTGATTGGTACTAACGAATCGTTAAATTTTGATTATAAAGTAACG # Right flank : CTAAAATACAAAAAATATTTCATAATATTTATAAATCTATCAGAAATTTTCTGGTAGATTTTTTTAGTGTAAAAATTTTTGAGTTTAAGATATATTATGGTTGATAATGTAATATTATATGATATATAATATAGTTGAAGATGAGATATAAAAGAAAGTGAGGGATGATGATGAAAATTCAAGTTAGTTCTGATTTACTAGATGGTTTAGTATTAGCGCTTTTAGATAAGCAAGATTATTATGGATACTCATTGACACAGGATATGCAAAGAGCAATTTCAATTTCAGAATCAACACTCTACCCAGTATTACGAAGGTTAAAGAATAATGGTTTATTAGAAACATATGATCAATCATATCAAGGGAGAAATCGTAGATATTATCGCATAACAAATAGTGGGGAAGAACATTTAGGAAGAGTTAAAAAAATGTGGAGCGACTACAAAGTTAGTTTAGATTCAATTTTCGAAAAAAACTAGGGAGGGGGAATAATAATGAAC # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [73.3-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //