Array 1 32-916 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXHI01000021.1 Moraxella catarrhalis strain R4 B619ctg34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================ ================== 32 28 100.0 33 ............................ TCCTTCAAAAATAGCGAAAATAAGCGTTTTAGC 93 28 100.0 32 ............................ AGCTAAAGGCGGCGCAAAAAAGTCAAACACCG 153 28 100.0 32 ............................ TTGTATCTGTGTCAGATTTGAGTGCGTGGCTA 213 28 100.0 32 ............................ TTTCGCAATAAGTTTGGCGAATATATCTCACT 273 28 100.0 32 ............................ AAATCAAGCCGGTGGTGTTGATTTAGTGAGCA 333 28 100.0 32 ............................ AGCGATTGAAAGTAATATTAATAGCTTTAATA 393 28 100.0 48 ............................ ACAATCAACGCCTAGCATTGGTTGATGAGTTTACCAAATTGGTTGCAA 469 28 96.4 32 .............T.............. TTTGGTGATTACAAGCTACCGTCCGAATTTCG 529 28 96.4 32 .............T.............. AACTCGGCAGCAATACCGCCAAGACATGTAGG 589 28 96.4 32 .............T.............. AGCCTGAGCTTGTCGCTGATGTGCTTAATCAC 649 28 96.4 32 .............T.............. GACGCAAAGATTGCAATCAGATAAAACAAAAA 709 28 92.9 32 ...........TG............... TAATCTTGAACCTATTTCATAAATAAACGGCT 769 28 100.0 33 ............................ AACTGTGTTAATCCGCTCAGACAAGCTTTGATT 830 28 96.4 31 .............T.............. CTTACAATTTTTTTGTCAAAATGCTGCATAA 889 28 92.9 0 .............T....T......... | ========== ====== ====== ====== ============================ ================================================ ================== 15 28 97.9 33 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : CAGTTCATTATTACCACCTGTGCCGACATTCC # Right flank : ATTTCGTTCTACAACTACGCTGATTATTTAAAATTTTTGTACCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGTAATTTATGACCGAGCAAACCACCGAACAAACCACCATGGAAGAGATTACGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCACAGCCAAATCCAAGCACTAGAAAGTGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTGAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCGTCCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATAC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : CTTCACGACCGCATAGGTCGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 32162-33025 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXHI01000040.1 Moraxella catarrhalis strain R4 B619ctg14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 32162 28 100.0 32 ............................ TTCAGTTCTTTCACTTGATAATGAACCTGCTT 32222 28 96.4 32 .............T.............. CCCATCTGACGACTGCGTTTCATGTATTGCAT 32282 28 100.0 32 ............................ GCTAAACAACACAATATTGACAACATGTCAAA 32342 28 96.4 32 .............T.............. TATAAAGAACATATCTTATCAATTCCCCGTGA 32402 28 100.0 31 ............................ TGTATTTATATATTAGATGATAATTCAAGGA 32461 28 100.0 31 ............................ TTGACCCCCGCCCACTAGCCCCAGTTGTGAG 32520 28 100.0 32 ............................ GCCGACAATACTACCTTGATAATCATTAGCCA 32580 28 100.0 32 ............................ TATCGCTAAGGCAGGGTTTAAATACCATTCAA 32640 28 100.0 30 ............................ TAAATTTCACTTACTACAAAACAAAAGGGA 32698 28 100.0 32 ............................ ACCCCAAGATGTAGATTTACCCCTTGCCACCG 32758 28 100.0 32 ............................ AGTATAGTGATTTTCGCCATTGACACACTGGA 32818 28 100.0 32 ............................ GCTGATGACAATCACCAATTTACCATCACCGC 32878 28 100.0 32 ............................ TGTGCGAAAATCCACCTTGACATTTGGAAAAT 32938 28 100.0 32 ............................ ATTCATTGCCAAACCTTTGATTGGTACAGTCG 32998 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 15 28 99.5 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TCGCATTGCGGCTTGGGTGATGGATGTCCCTGTGCCAAGCAAGATGACTGTGGTATTGGCGATGGGGATATTATAATAGTGGTTTTCGTATTTGGTTTCGGTGAGATACAGGATGCGCCCGTCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATACATTGGCGCGCTTGGAGTGCAAAATTGCCTTAAGATCCGTGGGTTTGAGCGTATCCATGACGTCAATTTCCTTAATGATGAATTTAATTTAATCACACCCATTATAGCCTGTCAAGCGATGATGCGACCAAATTATAAGCTTATATTATCCATCTGCCATATCAGTTATGCTATACTAAATTTGCCATCAGATGATGATGGGTGTAAAAAACCTTTATTTTTTCAACTATTTAAAAACTTAATAAAATCAATAAGTTATAACTAGTCAACTTTTGATTGGATAAAAAGGGTCAATCCATCATAAATGGCTGTTATTTCTTAATTTTTTCGGTTATAATTACT # Right flank : CAGTCGAATTCACCATGCCAAACGCCATTTTCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //