Array 1 787-1484 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQRA01000035.1 Paenibacillus elgii strain M63 contig_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 787 30 100.0 38 .............................. ATCGCATTCGTGAGCTGCCCCATGTACGTACCCCATTC 855 30 100.0 35 .............................. TAGTCAGAATCGGAAAGGGACGATTTATTAGCATC 920 30 100.0 37 .............................. CATAGTTCTGGTTGTCGGCCATAAGATCGCCGGAATA 987 30 100.0 36 .............................. ACACTTGCCAAGCACGGATACACTGCTGATAACTTG 1053 30 100.0 36 .............................. AGTTTCACACCATCCGCCTCCTCGTCGTATTTCCAT 1119 30 100.0 38 .............................. TCGCGTCCCAATTCTTGATAACGAGATATGCTCCAGCA 1187 30 100.0 37 .............................. GGCCAAAAGGGCATTCTCTCCCAAAGCAGTTTGTGAA 1254 30 96.7 39 .....A........................ TCTAAAGAAGAGGCAGACGACGTCATTGAGCTTCTTGAA 1323 30 90.0 37 ....TT...........A............ TTCCATTCCTCCGTATGGTTCACGTAGCCGACCAATA 1390 30 93.3 35 ....T........T................ ATCGCATTCGTGAGCTGCCCCATGTACGTACCCCA 1455 30 93.3 0 ....T.....................C... | ========== ====== ====== ====== ============================== ======================================= ================== 11 30 97.6 37 GTTTAGAACGTACCTATGAGGAATTGAAAC # Left flank : AAATTAAAGATCCAAGCATCCTGGCGATGCTATAGCATACACAAGAGCGCCCGACAAACGAGGGGCGCTCTTTGTGCATGCGAGAGTAGCGATCAGAGACCTCAATCAATTACACACAACTCAAGTTAAGCGGAATTATTGTATTAAGGAACATACGTTTGTTATACTTTTTATACCGATTCTTCTAATTGACAAGGATCAAAAAGATGCGAATTAGTTTGGAGGTTTGTGGTAAGGTAGAGGTGCGAGGGTTTTTCCAATGATTGTTTATTGAAAAGAGACCGGTCTGGTCTGTTGTTGTGATGATCTCGATCTTGGAAAAAGGTGGACAAAGGCATATAATTTAACTGTTCTGTTTTGTCGTCGACCCTCAATGCTGCAAAAATACCGGGGGATCGACGACAACGATAGCAGCGCGGTAGAAGGGATTATGGTATTTGCTGTGGTCGATCTGTAATTCTGGAATATGTAGAAATGGCTTAACGGCGGGATTTTGATGG # Right flank : CTCCGTCGTTTTATTCGGTCAGTATGGTGAGTATGGCGTGCATGGCCAGCATTTCCTTGAACGATTGAGGTAAAGAGACGATGCGATCTTTTCTCCCCCGTCACCCGGGCCCGAGTGCAAGCCATTCCACTCAATAACACGCCGTGCCACGGCCAAACAATGCAAACAAAAAAAAGCCTCCCGAGATTCGTCTCGAGAGGCTTTGTGGCGATTAGAACGTAATCGAATGTCTGTTGTCTTGGATGCATTCGCCGGAACGTGTTCGTTCGACGTAGTGAAGCTTATTGTCAGTCATCAATAAAATCGTAGAGCTTCTCGTACCATAATGATCGCTCCGAATGTAGATCGAAGAGAGGAGACGCTCCCACTGCAGCGACACGCCGGTGGCAGGCAGTGCATCGTCAGGTGCCGGCTCCGCGTCCTCAAGCAGTTCAAACAACGCATCGACACGGTCCTCCCGAACGTCCTCGAGCTGCGCTTCCAACTCTTTCTTCCCTTTC # Questionable array : NO Score: 9.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGAACGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 2 15882-16177 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQRA01000035.1 Paenibacillus elgii strain M63 contig_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 15882 30 93.3 36 ........T............G........ CATAAACCCTACCTCGGATGGATCAACGCTCGACTC 15948 30 93.3 38 ........T............G........ CGCTCCTTCTTTCATTTAATAACCGCATTTTGGACACT 16016 30 96.7 36 .............T................ TATTTCGTCGTAAAGTCTTTGATGAATTTCTTTAAC 16082 30 100.0 36 .............................. TAGCACATTGCACTACCAGACAAATGTTTGTTTGGA 16148 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 5 30 96.7 37 GTTTTGAACGTACCTATGAGGAATTGAAAC # Left flank : CTGGCCGCGATCCCGGTTCCCGATCCGAAGGTGGAGTCGCAGAAGACGTTCACCGCTGTGGAGGAGTCCTCGAAGGTGGACCCGTACGGCTTGGAGCGCTCAAGCTTCGTTGAAGTGAAGAAGGGGCATTGGGTGGCGGTTGCTGAGGGGTAGGGTTAGATGAGGGTTTGGGGACGAGCGGGTAGGGGATTAGGAATTAGGGTCGATTCCGTTCGCTGTGCTCGGCTGCTGGAAGAGATTGAAGGCGAGGATACTAAAGAGGTAAAATTAGCTTAAGCAATAGGAATAAACCAGAGCGTCAGAGTTTAATTGCGTTGGAAAAAAACGGGCAAAGTTGTATAATGTAACTGCGCATTTGTGTCGTCGACCTCCAATGCTGCAAAAAAGCCGGGGGATCGACGACAACAAGGGCCGCGTGGGAACAAGGATTTTGGTAGTTGGCGTGAGGGAGAATTGTTTGTTAGATATGTGGGAATAGCGTAACGACGGCGTTTTTATGG # Right flank : CCAGAATTGGAGCGGCGACGCTATTACGTGAGGTACAGCGTTTTGAATGTGCCTATAAACCTGCATCAACTTGAAGCGCTGCATACACCATGCACCGCGTTGGAGAGGCTGCAACAAGAGCATCTTCTCCCTTGGAGGAGAAGATGCCCCTTTACACTAATGGTTTCATTATGACCGCAATGGAAGCTGTTTTACGGCCTTTGCATATATCCGTGTCGATTCTTACAATCTGAATAGATTAAGTATGAAGGGCCCGGGCCATCGCATCCATATAGCTCTGAACGGCGCGCTGACTCACTTCCGCTTCCGGAACGAAACTTTCAAAAAGGTGAAAGCATCCGGGATACATATGAAATTCGACATCCACACCTGCTTGTGCAAGCCGCGTTACATATTCGATCGTCTCATCTCGGAACAGATCAAGCTGACCCACACACGTATAGGTTGGTGGCAGCCCTGCTAAGTTCTCCGCTCTCGACGGTACCGCATAGGGAGATATC # Questionable array : NO Score: 8.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGAACGTACCTATGAGGAATTGAAAC # Alternate repeat : GTTTTGAATGTACCTATGAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : NA // Array 1 11-577 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQRA01000080.1 Paenibacillus elgii strain M63 contig_52, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 11 30 100.0 36 .............................. TAGGGTTCACCAAAGCACCCTTGCTTCCCGCAGGAA 77 30 100.0 38 .............................. TTCCTGACAATACTTTTGTTGTTCTTGGAGGACGCCCC 145 30 96.7 37 .................A............ TTTTTTATTTGGGTGGTCGTCAGCGGTCCAATACTTC 212 30 100.0 35 .............................. ACAAGCAGAATAGTAGGGATAACAGCAAAGAACAA 277 30 100.0 38 .............................. TTTGTCTCCAATTGCCATTGTGCGAGAATAACGGTCGG 345 30 100.0 39 .............................. TAGCTGTAACCTGGTTGGATTACTTCCTGCCGTACCAAC 414 30 96.7 37 ....A......................... TCTCGATGTGCCTCGGCCTTTTTTGCCTGATCCTCGG 481 30 96.7 37 ....A......................... TTGCTTCATTCAGATCAACAATTGAACGTTTTTCATT 548 30 96.7 0 ....A......................... | ========== ====== ====== ====== ============================== ======================================= ================== 9 30 98.5 37 GTTTTGAACGTACCTATGAGGAATTGAAAC # Left flank : GGAAGAGCCAG # Right flank : CTGGAACTCTGCCTTGAATTCCTTCGCAAAAACGCACCCGCAAATTCACTTAAAAAATCTCTATTTCGTTCGAATTGACCTCGTAAAGCTCCTGCGAAATCCCCCATACTCAAAAGTAGTGTATTGCCGCCAATTGGCGGCTTTTTTACTGCTAGAGTCCTGACATATGCGGAGCGAAACCGGGACATACGTACTAGGTCCGGTAGAATAGGTAGTTGTCTGTTCGTATTTTTACAAAAAAAGGGGAACAAAAAGAAACTGCATGATATAATGACACTATTCATACCAAAATTTGTTGCCCTCGAAGGGCGACAAAGTGTTACTGTCGGGAGGCGAAGGGGTGCAGATTTATTTCAGGGTCAAAGCGGTCGGCAAAAGGCGTCCTGTGCTGGAACTCATTGAGGCGTCGCTGCCTGACGATGTGCAGTGTCTGGGGGATGCGATTCGGGCGATTGTAACCGATCAAGTGCAGCGTTTTAACGCGCGCAGCATCGAGCAAT # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGAACGTACCTATGAGGAATTGAAAC # Alternate repeat : GTTTAGAACGTACCTATGAGGAATTGAAACT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [6.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 1 113339-111842 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQRA01000083.1 Paenibacillus elgii strain M63 contig_55, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 113338 30 100.0 37 .............................. GTTTAGAAGACTTTTGAGCCGCCAAAATATACCGATC 113271 30 100.0 36 .............................. ATGTTCGTCTTTTTTGACAGCCGGCTGTTCTTCCGG 113205 30 100.0 35 .............................. CCTTTTACGAAATTTTCCATCAGTCGCATATTTAC 113140 30 100.0 38 .............................. TTCTCCCTTCTCAGCGTCTCATAGTCCGCTTGACTATA 113072 30 100.0 37 .............................. TAAATCGTACCATTTCGCGAAGCAAGGAGCGACCCAT 113005 30 100.0 35 .............................. TCAATTGAAGCCACCTTAAACTTATAGGTTGTTTT 112940 30 100.0 35 .............................. CGCGGAGAGACGACGGAGGAAACGGCGGAATACTT 112875 30 100.0 38 .............................. TTGGTTTGAACGACCACATCAACGAGACAAAATGTGTT 112807 30 100.0 35 .............................. ACCATTCATCCCCTGCTGATACTTTGCGTTACATC 112742 30 100.0 38 .............................. AAAGGAGGTGTACATGTTGTCTTTAGAACAAATGTCGT 112674 30 100.0 39 .............................. GACGGAGTGAAGTCATAGTTGATAGAGCCAGCGCTGCCA 112605 30 100.0 37 .............................. TAGGGCCATGCTGCAAATTAGCGCAGCACGGAAAGTT 112538 30 100.0 37 .............................. TACTTTGGTGCCGGGACAATGTTACCTTCTTTATCTT 112471 30 100.0 37 .............................. TACCAACCGGCCGATTTACCTTCGGCGTCGGTGATTG 112404 30 100.0 38 .............................. TTGATCCGTCGTATGCGATCAAAAAGCTGATATACGAC 112336 30 100.0 36 .............................. CATCTTGCCTGCGGCGGCGTCAACGTCAGCGGCCGT 112270 30 100.0 38 .............................. CCGCCTAAGCAAGAACAGCGGCGTTTCCCTCACCGCAC 112202 30 100.0 39 .............................. TAGTACGTTTGCCGCTTCATGACCACGACGATCTCGCCA 112133 30 100.0 35 .............................. ATCGAAGCGTGGACGATAGCCTTCGGCGCGCATGA 112068 30 100.0 38 .............................. CCATTCGCGCCGCCTTCTTCCAGGTTGTACTGGTCAGC 112000 30 96.7 37 ................C............. TGCCTTGTTTTAGCCTCGATATCCCAAATAACTTGAA 111933 30 86.7 32 .........C......C......A.....A ATGATCAAACAGAACGTTATCCGCGAAATCTT 111871 30 73.3 0 ....C....C......CA....C.CC..C. | ========== ====== ====== ====== ============================== ======================================= ================== 23 30 98.1 37 GTTTTGAACGTACCTATGAGGATTTGAAAC # Left flank : TCTCGTATTTGTAGCCCTCATTGTGAAGGTGTTCGCGATATTGCTCGTTGCGAATGCTGGCGTAGATTAGTCCGTGCAGCAGCTCGAAATGATGTACCGGCACGATCAGTTGGCCGGGGAATTGGAGCGTTATTTTGACTCGCAGAGGAAATCACCTGTTTTCTTATAATATGCGTAGCAGACTTTCTACAAAAAATAGTATACAATTATTGGTATACTTCTCAAGTGAATATTTGCAGCAAAAAACAAAAGTTTATTCAAAATCGGATAATATTGCGAAATGATGCCGAGGGAATATGTTCGAATTTATCATTTTGGTAAATGAGACTATAACACAGTGATGAATCTATGCTTATTTTGTCGTCGACCCCCAATGCTGCAAAAAAGCTAGGGGGTCGACGACAACAACAGCCACGGAGTAGAAGGGATTTTATTTGTTCACTATAGGAAATAAGGGTTTCGTAAGATGTCAGAATAGCGTAGTAACGGCATTTTTACGG # Right flank : TCGCTTCCGCCCCACAAACAACAAAAAACGCCGCGGCTCAGGACAAACCTGACTACCGCGGCGTTTCCCGCTACACTCCCGCTTTTTCCGCGGTCGATTTCATTCGCTGCGCGCTTTCATAAAGGATGCGCTCCTCGTCGAGCGTCAACACTTCCCGCTGCTTCATTACCAGTTTTCCGTCGATGATGACGTCCTCGACATCCCTGCTGGTCACCGATTCGACGATCATGTTGATCAAGCTGTGGGACGGCGAGATATGCGGCTGATCGATATCAATAAGAATAAGGTCCGCTTTCTTGCCGATCTCGACCGTCCCGATCTCATGCCCCAGCAGCATGGCTTTCGCGCTGCCGATCGTGGCCATCTTGATCAATTCCTTGGCCGGGAGCACGACCGGGTCGAATACCGGAAGGCCCCAGGACATGTGAATGCCCGAGCGGAATACCCGCATTTCATCGAAAAGGCTCAGATTCGAAGAGGACGATCCGTCGCTTCCCATG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGAACGTACCTATGAGGATTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 2 122808-123569 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQRA01000083.1 Paenibacillus elgii strain M63 contig_55, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 122808 30 100.0 35 .............................. AACGTTGAAACCTGTTTCCCGATCACCTCCAAACG 122873 30 100.0 34 .............................. TTTCCCGCGCCGCTGCCGCCGTGCGTGCTTCTTC 122937 30 100.0 36 .............................. ATGCTGCGGCAACAATGTAAACCTTTGATCCCGACG 123003 30 100.0 37 .............................. ATCGGAGGTTGGTCCGTTTGGTCCTTCGGCTTGGCGT 123070 30 100.0 39 .............................. TGTCAATGACGAAGATCGGGTCAACTTTGATCTTCCCGT 123139 30 100.0 36 .............................. CCGTGAATGGCAAAAAGAAGACGAAGGTTGTGTCGT 123205 30 100.0 35 .............................. CGGCTCCAGATGGTACAACCCTAACAAGACAGTAT 123270 30 100.0 36 .............................. TCCCTTGATATTGACCAAGACCATTCTGGATAGGAT 123336 30 100.0 37 .............................. CCATATCATTCTTTATAAATACATCATTGCCGATAAA 123403 30 100.0 38 .............................. AAGGAATAAGAAGCGAAGTCGACCATGATTTCCCACAG 123471 30 100.0 37 .............................. ACCCATATGACTTCAACACAACGGACAGGATAGCCCA 123538 30 83.3 0 ....A.....A.T....A...........T | AA [123559] ========== ====== ====== ====== ============================== ======================================= ================== 12 30 98.6 36 GTTTTGAACGTACCTATGAGGAATTGAAAC # Left flank : CATGGGCGAGAAAAGCTACGAGCCGTTCGAGGCTTTGTGGTAGGACCGGCCGTATAATAGCTGGTGCCGGAAAGAGGTGATGTTTCTGTTTGCGATCATTGTGTACGATGTCGGGGAGAAGCGTGTAGCCCGCGTGCTCAAGACATGCCGGAAATATTTAAACTGGGTCCAAAACTCCGTACTGGAAGGGGAGATTACGGAGACAAACCTAAAGAAGCTGAAGGCGGAGCTGAATAAAATTATCGAAGACGATGAGGATTCGGTTATTTTCTATACTTGGCGTACCCAGAAGTACTCGGATCGGGAGATTATGGGGTTGGAAAAAGGTGGACAAAGCCTTATAATTTAACTATGTTTTTTGTCGTCGACCCCCAATGCTACAAAAAAGCCCGGGGGTCGACGACAACGATAGTTGCGCGGTAGAAGGGATTGCGGCGTTAGCTGTTGGAGATACGAAATGTGGGATATGCAGGAATGGCGTAGTGGTGGGGTTTTTATGG # Right flank : TGCGGATGGTCGCTTGGCAAAGGCAAAGTTGAAGGCCATCGATAAAAGCGCATAATGTACGCTTAATGAAAACACGCTTTTAGAGCGATGAATGATATGCTATGTTCAGTCCCTTCTCATTTGTTGTTCATTTTTTGTCGAAATCATCAATCTCAGCAAGAATCAGATAAATGATTCCGGCGATTAGAACGATCATACTGTAAGTGGTTAAATTCCCCTCTACATAATCTAACCATTGTTTGAAAGAGTCTGCGCCATAACCACTGTTAGGTGATGATGTTGAATATATCGATGCAGTTATGTATTTGACTCCTGTAAGAAAAGCAGAAATAGCTAAAAGAATAACCCCAGCCGCTCTCCTGCTCAAATTCATCACTTCCTTTCTTTTTTTACGTAATGATACCAGAATATTGCCAAGAGTCTCCCGTAACGCACGAATGATTCCAAATATCAAAATACGTTTATGTAAACATTGGGAAATCCTGAATCCGGTAAGTACC # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGAACGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 3 129056-129617 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQRA01000083.1 Paenibacillus elgii strain M63 contig_55, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 129056 30 100.0 36 .............................. TCGTAGATTGGTCCTGGCGAATGCAGTTCCCTCATC 129122 30 100.0 39 .............................. ATGTTCAATCCGCAAACGATACAATGTGATTCTGTGTCC 129191 30 100.0 35 .............................. TGCGACGTCAGCAATTGATACGTTTCTTGAAGGTA 129256 30 100.0 37 .............................. CCACCAGTAGGAAGAGCTTTGTCGATATCCACACTTC 129323 30 100.0 36 .............................. TTTACAGGCGTTCCGCCCTTTGCTTTTGAAAAGTGC 129389 30 100.0 37 .............................. CATGGCCGCTGCCGATCGGTGTTGACGCCGCTCTATA 129456 30 100.0 36 .............................. TTTTGGAAATACGACCTATTAGCAGTGGGTTTCGTA 129522 30 100.0 36 .............................. TTAGGGCCGCGATCAAATAGATCGGCACGGACCGGA 129588 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 9 30 100.0 37 GTTTTGAACGTACCTATGAGGAATTGAAAC # Left flank : TTCCTTTTGCGATTCCGCAGGCTTGCGTAATTTCCTCGACCGTTACGTTGTCGAAGCCCTTTTCTTTAAACAGTTTTATGGATTGTGCGAAAATGCGCTCTTTCAGTTCTTGCTTTCGGGATGCTCTAAGCATCGGGGAGGGCCACCGCCTTTAAAAAAATGACTATGGTCATAAAATGACTATGGTCATGATTTTACTCCTATTTTTGGTATTGTTCAAGTATCAAAAAAGATACGAAGTATTTAGAATTTGTGGTAAGGTGGAAGTACAAGGCATTTTTGCAATGATTGCAATTAAATTCAGGTGACTATGAGTTGGAAAAAGGTGGACAAAGGCTTATAATTTAACTACGCTGTTTGTCGTCGACCCCCAATGCTGCAAAAAAGCCGGGGGATCGACGACAAGGATAGTTGCGCGGCAAAAGGGATTACGGTGTTTGCTGGACTCGATACGTAATTCTTGAATATGTAGAAATGGCTTATTGGCGGGATTTTTATGG # Right flank : ACCGTATGAATCGTGTAACACTGACAGGAAGAGCCAGTTTTGAACGTACCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGAACGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA //