Array 1 8542-9791 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDIV01000160.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM113, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8542 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 8603 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 8664 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 8725 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 8786 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 8847 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 8908 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 8970 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 9031 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 9092 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 9153 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 9214 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 9275 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 9336 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 9397 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 9458 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 9519 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 9580 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 9641 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 9702 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 9763 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TGGATTATCTGTATTTTACGGAAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 174-1666 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDIV01000334.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM113, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 174 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 235 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 296 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 357 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 418 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 479 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 540 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 601 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 662 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 723 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 784 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 845 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 906 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 967 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 1028 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 1089 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 1151 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 1212 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 1273 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 1334 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 1395 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 1456 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 1517 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 1578 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 1639 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGTG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 28891-27903 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDIV01000112.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM113, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 28890 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 28829 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 28768 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 28707 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 28646 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 28584 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 28481 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 28420 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 28359 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 28298 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 28237 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 28176 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 28115 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 28054 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 27993 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 27932 29 96.6 0 A............................ | A [27905] ========== ====== ====== ====== ============================= ========================================================================== ================== 16 29 99.6 35 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTCATCAGGCACTACCGGCACTTTCTGC # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.18, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //