Array 1 197571-195442 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEUYQ010000064.1 Xanthomonas fragariae strain Xf1431 Scaffold4_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 197570 28 100.0 32 ............................ AGACGGTACAACTGCATACGCTAGAGGTATAG 197510 28 100.0 33 ............................ GTCATCGTGACAACCGAATACCGTGGTGTCTTC 197449 28 100.0 32 ............................ TTACGGTCATGTCCTGGATATGGTGTCCAGGA 197389 28 100.0 32 ............................ TTTCAGATCCCTCGCCTGGGTGGCCTACTCGT 197329 28 100.0 32 ............................ GTCCATGCGGCCGGCAGCCAACAGGCTGCGAA 197269 28 100.0 32 ............................ TATGTCGCTGAGGGGTGATCCATACCTAACCC 197209 28 100.0 32 ............................ CTGGCTGCAACCGCTACTCCGTAATAACTAGG 197149 28 100.0 32 ............................ ACCAGGTCCCGGCCCTTCTGGGAGTTCACTGC 197089 28 100.0 32 ............................ AATGAGCAATAACTTTTGCGCTAGTGTTCATC 197029 28 100.0 32 ............................ ACATTATCTTTTCCGCGAATCAAAAGCTTAAT 196969 28 100.0 32 ............................ TTCCGGGGCAATCCCTTTACGCCTTCTTGGCC 196909 28 100.0 32 ............................ ACCAAACGAACTGGTCCAGGCTAGGATCCGTT 196849 28 100.0 32 ............................ TTCTGGGACCACACAACCTCGCCTGCGTGCAC 196789 28 100.0 32 ............................ GTTCAGGGCAGGCGAAAGGTCTCAGCGCTGCA 196729 28 100.0 32 ............................ GCATCGACCCAATGGCCGCCCTTGCCAGGCTC 196669 28 100.0 32 ............................ TGCAGATGCGCGCGACGAATATCGGACGTGTC 196609 28 100.0 32 ............................ AAACATGCGGGGATCAGCACGGCCATCGGTTC 196549 28 100.0 32 ............................ CGTAGCCGGGAACTCAGCCAACTGTGCTTGCA 196489 28 100.0 32 ............................ GATTTCACTGATTGATCTGGACACTGTGCAGC 196429 28 100.0 32 ............................ TCGAAGTAGGCATAAAGCACGTTGGGCAGCCG 196369 28 100.0 32 ............................ CAGACAAGCCAGACGCCGACCCACTGATAGTC 196309 28 100.0 32 ............................ CGTCGTTTCGCGTCGTCCACCGCAGCCAAGGT 196249 28 100.0 32 ............................ ACCAACGACGGGTGTCGCGCGCACCTGGGTAG 196189 28 100.0 32 ............................ ACCTACGAGCCCCAGCCGTATGCAGAGGTTTC 196129 28 100.0 32 ............................ CATTAGGCTGCACAGTGTCCAGATCAATCAGT 196069 28 100.0 32 ............................ AGCCGCACCCTTGCAGACTGTACTCTCTGCAT 196009 28 100.0 32 ............................ TCCACGTCCTCTTGAACAACATGTTCAGGGAG 195949 28 100.0 32 ............................ TGCAGCAGGGGGAGGAACTTCCGTATCAAGAC 195889 28 100.0 32 ............................ TGTAGGAGCAGACGGGGACAATACGCAAGCAG 195829 28 100.0 32 ............................ TTTGCGCCACACCGAAACCGAATTCCGCGACA 195769 28 100.0 32 ............................ TAAGCAGCGCGTTAAGAATACATTCGTGACCT 195709 28 100.0 32 ............................ TAGATGCCCTGATTGCAGAAGTCAGGACCTCT 195649 28 100.0 32 ............................ TCTATGGGGAAATCATTTTCGAAAAGTACATC 195589 28 100.0 32 ............................ TCCCAGGGCAGTCGGTGTCGCACCTTGCTTCG 195529 28 100.0 32 ............................ TTAAACCAAAACTCATGCCAGTCGTAGCGACT 195469 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 36 28 100.0 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : TTGCAGATGTTGATGGCGAGACCCTGGCTGCACGGGATGCTCGATCACCTGGCGGTATCGGCCATTCTCGCTGCCCCTGCCGACACCCAACATCGGCACGTCACCAGGGTGCAGGCCAAGAGCAGTCCCTCGCGCCTGCGCCGTCGTGCCATGCGCCGTCATGGGATCGATGCAGAGACAGCCGCCCAACGCATCCCGGATGCGGCAGCCGAACAGCTGCCACTGCCGTTCGTCGTACTGGGCAGCCGCAGCACGGGACAGGCGTCATTCCCGCTGTTCATCCGTCACGGCCCCCTGCTATCGGAGCCGACGAACGGCAGCTTCAACAGCTATGGCCTGAGCCAGGAAGCGACCGTGCCCTGGTTTTGACCCTTTTTCCCGGACAGAACAAAGGCTGCTTTAGAATCAACCACTTGGCAGGCACCTTGTTTCAAAGGGTGCCTGCCCTGTTTTGTCGGTATTTCTTTTATTTATCAATGGATTGATGAAGATCTGATCTT # Right flank : AATTCAAGGATGGCCATACGGGTTGGATTGACGTTTGATACGCCCAGGGTTCCGTAGACCCTCAAGACCCTCGTTGCGCGTAGCGCCGTTCAAACTCTACAGGGGACAGGTCGCCAGTTGAACCGTGGCGGCGGTTGGGGTTGTAGAACATCTCGATGTAGTCGAATACCTCGGCGCGAGCGGCGTCCTTGGTGGAATAGGTCCGCCGCCTGATCCGCTCGCGTTTGAGCAGGCCGAAGAAGCTCTCCACGGGTGCGTTGTCGTGGCAGTTGCCACGCCGACTCATGCTGCACACCACGCCATGGGACGCCAGGAAACTGCGCCAGTCATCGCTGGTGTAGACAGACCCTTGGTCCGAATGAACCAAGCAACCAGCGTTGGGTTTGCGCCGCCACACCGCAGACAACAAGGCCTGCACGACCAACTCGGTGTCGGCCCGATCGCGCATCGCCCAGCCGACGACCTGCCGGGAAAACAGATCGATCACAACAGCCAGGTAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //