Array 1 38981-37037 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAILYL010000008.1 Streptococcus suis strain SS371 Scaffold8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 38980 32 100.0 33 ................................ CGTAAGAAATAGAGCGAAATTCTCTAAAAGGAA 38915 32 100.0 35 ................................ TAACGATTTAGACGGTTCTTATTTTATCCGTACTA 38848 32 100.0 33 ................................ GTAAACCGATATTTTAACATGAGTTGTATCTAT 38783 32 100.0 32 ................................ AAAATTTACCGTTGTGTATAGCATTACCCATA 38719 32 100.0 35 ................................ AATTGTATTCACTATTTTACTAACACAGGACTACG 38652 32 100.0 35 ................................ TAATGTAGTTGAGAAAATAGTAAATAATCTAACTC 38585 32 100.0 34 ................................ ATTATCTGACGATGTAAAAAACGTTTGTGATAAA 38519 32 100.0 33 ................................ AAATAATGGTAGAGGTATTGGATTTGAAATTGT 38454 32 100.0 34 ................................ AAAATTAGTATTTGACGTAGGAAAAATATCTGAC 38388 32 100.0 35 ................................ CTGAAAGCATTCAAAAAAGAATTGACGCTGGAAAT 38321 32 100.0 33 ................................ TAAAGATACTTATGCTCACACTATTCACAATAT 38256 32 100.0 34 ................................ CTGATTCATTGCCTGCTTAGCGACAAGCCCCATC 38190 32 100.0 35 ................................ TTTACAAACTCCATCTGTTTTAGGAGGAAAATCCT 38123 32 100.0 33 ................................ ATCGTCTAAAGATGATTATGCTCAAACCATTTA 38058 32 100.0 34 ................................ TATGTAACTGCATATAACATTGATGTTAAAAAAA 37992 32 100.0 33 ................................ CTGAAAGTATACAGAAAAGATTAGACGCTGGAA 37927 32 100.0 34 ................................ AACTAAACTCCACTATACAATTTAAAACAACACT 37861 32 100.0 34 ................................ TAAAAAACTTACTAAACATGTCTACCCCACTTTC 37795 32 100.0 34 ................................ TGCAGCACCATTTGTCGCTTTAAGTACACCTCCT 37729 32 100.0 34 ................................ TTCTTTGTTGAAGTCTCCAACTCCCAGGATAAAA 37663 32 100.0 36 ................................ AAGGTATGGATCTAGTGCAGTCCCAAGGTCACTCGC 37595 32 100.0 34 ................................ CTATAATCCATAGAGTAAGTTACTTTGCCTCGCC 37529 32 100.0 34 ................................ CATTCGCTCGTCTGGCCATACAAACGTTGAACGC 37463 32 100.0 33 ................................ ATCTCAATGAATGATACTAAAATTCTTCCTTAT 37398 32 100.0 33 ................................ TACTGCATACTCCAATGCTGCCTTAATGTTTTC 37333 32 100.0 34 ................................ AAATGGACTAAAGCTGATTTTGATGCTCTTGTGG 37267 32 100.0 34 ................................ AGTAAGTTGATTCATATCAATTCTCCTTCTTCAA 37201 32 100.0 35 ................................ AAAGTAAGTATTTTACTATTAAAAATCAAAAAACG 37134 32 96.9 34 ..............................G. AACGTATCGACAGACTAGCTGCTCGGACGGACCG 37068 32 78.1 0 ....T......TG..TA.....A........C | ========== ====== ====== ====== ================================ ==================================== ================== 30 32 99.2 34 GTCGCACTCTTCACGAGTGCGTGGGTTGAAAT # Left flank : GCAAAGGCTATTCGAGGGGAGTTGGACAGTTATCCTCCGTTTATGATATAGGAGCTATATTATGATGGTATTAGTGACCTATGATGTCAATACAGAAACAGCAGCTGGACGAAAGCGGTTGAGAAAAGTAGCCAAGCTGTGCGTTGACTTTGGACAACGTGTGCAACATTCTGTTTTCGAATGCTCAGTCACCCCAGCAGAATTTGTTGAAGTGAAGAATAGATTATTGGAAATCATTGATAAGGAGCAGGATAGTATCCGCTTTTATATGCTAGGAAAAAACTGGCAAAATCGTGTGGAAACGATTGGACGAGATACTAGTTATGATCCTGATCAAGGAGTCCTTCTGTTATAGATTATCTCTGCGAATCGGACTTACTCATAAAAAGTAAGGAGATTCGCGTGAAAAACATATGAAAAACAGTGAAAATAGAGTGAATTTATGGTATATTCTATATCTGTAGAAACTTTATTTTTACAAAACAGTGTCAAATGGCACT # Right flank : TGTTTTTGCTTAACACAGTATATCTGGTGTGGACGTGTTCGAAGTTTCCCTCCTTTAACTCATCTCCCCACAATTTTCGAAAATTCTTGTTTTGTCTTGCTTGCTTCATGCTATAATAGTTGTATCAGTTTTTTAAAAGGAGACAAAAATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAATTTGTGACGGACGGGATGATTGTTGGGCTTGGAACTGGTTCGACGGCATACTATTTCGTGCAGGAGATTGGCCGCCGGGTTGCGGAAGAGGGCTTGCAGATCACAGGCGTAACGACCTCTCATGCTACGGCAGAACATGCTGCGTCCCTTGGGATTCCCCTAAAAAATATCGACGAAGTCGAATATGTGGACTTGACGGTGGATGGAGCAGATGAGGTTGATGGAGACTTCAATGGGATTAAAGGCGGTGGCGCAGCGCTTCTCATGGAGAAAGTGGTCGCAGTCAACAGTAAGGACTGCATCTGGATTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTCACGAGTGCGTGGGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.40,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //