Array 1 15439-16194 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_RJQJ01000011.1 Staphylococcus pseudintermedius strain ME4674 11, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
     15439	    36	  97.2	    30	............................G.......	GCAGAAAAACCCTTTGTCAGTTATGGGAGC	
     15505	    36	  97.2	    29	............................G.......	GACAATTGCATCATCGTTGTCATCTGAAG 	
     15570	    36	  97.2	    29	............................G.......	CTTTCTAAAAAACGTTGATACGCTTCTTT 	
     15635	    36	  97.2	    29	............................G.......	CATTACCTTTGTTTGCGTTGTTTGATTCT 	
     15700	    36	 100.0	    30	....................................	ACATCTGAACCTACCGCGCTATCGCTTACT	
     15766	    36	  97.2	    29	............................G.......	GACAATTGCATCATCGTTGTCATCTGAAG 	
     15831	    36	 100.0	    29	....................................	GTTAACTGAACTCGAGTGTTGGCGCTTGA 	
     15896	    36	 100.0	    30	....................................	ACAGGCTTAAAGAATCATTACAGTTTGCTA	
     15962	    36	 100.0	    29	....................................	AGTAATGATTTAGAAAAGCGTGAGCATAA 	
     16027	    36	 100.0	    29	....................................	AGTTTTTTGGCGAGAACTAATGGGATTTC 	
     16092	    36	 100.0	    30	....................................	GTTATGATGTTTGGCGATATGGGTCGTCGT	
     16158	    36	  86.1	     0	..........................AC.TC.T...	|                             	C [16191]
==========	======	======	======	====================================	==============================	==================
        12	    36	  97.7	    29	GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC	                              	       

# Left flank :   TTTTAATTATATTATTTCCGGAATCACATCTTGGCATACACGATATTAAAAAGTTTATACACCTTATAAAGAGATATAAATTTACCACGATTATTTTCACTAATCATCCTACTATCATTATTAACGAGGAAAACATATTTCTTTGTAAAAGTAATAAGAAGTGCCACGACATCGAAAAAATATATGAAGAATTAATGTTATTTGTTCCTGAAGAAGTAGTGAGTCATCAATTAGTTAACATGATTGCATATCACGAATTCGTTGGTGAAAACCTTTCCGAGTATGAGCGATATTTTAAGTTTATCAATCATTACAATTAGGCTATACTATATTTAACATTATATGATAGAGAAAAGTTGATCCAACGATGAAGTAATGACTATGTGACTTCATTCGTGATGAAGAGTGTTAACTTTATCATCGAGTATCATATCTGACTTCTTTTAATAGTGCTAAGCCTCAATTTTGAAAAGGATTGAGTTAATGTTTTTGGATTTGAG
# Right flank :  CCTTCTTTATAATCGTACATCAACCTCACTATGCTTTCAAAATAATTAAGAGGCATTGTGGGCTTTTTGTGTTTATACGAAATGTTGTATGAATCTCTCAATCGTGCCACCATGTTATAATAGGTATAAATTGTTCATAAAAAATAAATAGAAAGCAGGGGAAATCTATGGAAGCAATTATTGCAACTCAACCGTTCCAATTAGCAGAAGGTCAAAAGTTTGAAAAAGTATCGCGTGAGCTCCCAACACCAGAGGCACATGATATTTTAATCAAAGTGTACGCAACAGGGATCAATCCGGTTGATACGAAAATGCGGCAAGCCCCGTTAAATGCTGAGGCACGTGTCCTAGGTTTTGATGCGGCAGGTGTGGTTGAAGCGGTCGGCGATGCGGTTACGGATTTCAAACCGGGTGACCGAGTATATTATTCAGGATCGAATCAACGAGATGGCTCAAATCAGACGTATCAGCTCGTGAATGAAAATTATTTAGCGCATATG

# Questionable array : NO	 Score: 6.03
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC
# Alternate repeat :   GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:75.00%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.20,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-7] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.91,0   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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