Array 1 101289-100655 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJEG01000017.1 Bifidobacterium longum strain APC1461 contig0017, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 101288 33 87.9 33 CAG.............................T CACGTGGCGGACGGCGGACTCGCAGACCGCCAC 101222 33 97.0 32 ................................A CGCCTGATGTGGTCGCATCGTGGAAGGCGCTG 101157 33 97.0 35 ................................A TGAAATGGAGCAGCAGGGCGTGGCAACCTCCCCAG 101089 33 100.0 33 ................................. CCGTGCCCTTCGCCCCCGCGTCCGTCTCCCCGC 101023 33 97.0 34 ................................G TGGCGTCGGCCTTGCCGTCAACCGTGTCAGACAG 100956 33 97.0 35 ................................T CGAAAACGCGCCCCACGGCGGATGTGGTGGGGAAC 100888 33 100.0 34 ................................. GCTAAATAACAGTAAGGGAGAAGAGCAATGTCAA 100821 33 100.0 34 ................................. CTCTGACCGGCGATACGGCGACGCTCGAGAGGAC 100754 33 100.0 34 ................................. GTATGGATTTACCTCGAATCGAAACCCATGGGAG 100687 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 10 33 97.6 34 GTCGCACCCCACTGGGGTGCGTGGATTGAAATC # Left flank : GTTTCGGCCGGTAGGGACGGTACGACCCGTTCTCGTTGGACGCGAACCACAGGCCGCGCCTCAGCTCGCGTGACACCGTGGACTTGTCCCGACCGATCCTCTCCGCGGTCCGCCGGATGCCCGGATGCTGTTCGCAATGCAGCTTCTCGATCAGGATCCTCTCCTCGGACGACAGGTGCGAATACTGTTGACCCATGAGTGCAACACCTTCTTAAGTTAGAAACTGAACACTTCCAACCCTAGACAAGGTGTTGCACTTCTATTTAGGAC # Right flank : GGCATGGAATTGTCCCCGCTATAGACGTTGCCACTCATGGTGGCAGACGCGGAGAGATAACCGCGCGACGGCTAAACCGGACGTCTGGAATTGTATAATTGGGCTCACTGTAGCGAGTATGCGAGGTGAGCCATGAGTCTTAGGGAGTTAAGGCAGAAACGCGGGTTAACCCAGCGTCAACTAGCTGACAAGTCAGGCGTGCCGCATACACGAATCGCCACGACTGAAACCGGGTCAAGACCTATCGAGAACATGAGTCTTGGCATGGCTATCAAGCTGTGTGACGCGCTCAGGATATCTAATCCGCGCAAGCTGTTAGAGGCTGATAAGCCGAAAGAAAGCGCCGCCAAGTAGGCGGGCGCGTGCCCTAATCAATTCTTCGCCCGACTGTAGGCGTTGTGTGCAGTCGGCCTAAACTCACTGGGTTCACCCCATAGTCTAGGCACTCATGGCATGTCCCAAGGTGGACGGGATACGCTGAAGTCAATTTTGAAAGTGAG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCACTGGGGTGCGTGGATTGAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.80,-7.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 4978-1029 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJEG01000018.1 Bifidobacterium longum strain APC1461 contig0018, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 4977 33 97.0 34 ................................C GCCAGAAGAATTGGGCTTCCGCCTCCGGGTTGCC 4910 33 97.0 36 ................................C ACCAAATACATCGTCACGGCAACAAGTTGGCCTCAG 4841 33 100.0 34 ................................. ACCACGGGATTCCTGCGAACTGGGTTTGCTTAGG 4774 33 97.0 35 ................................C CCAAGATATTGGCAAAGGCAGACCGGGTTCTTGGC 4706 33 97.0 34 ................................T CAATATGATTCGCAACGAGGCGTCGCCCGAATAT 4639 33 97.0 33 ................................C AGCTCAAACTCGCCATGTACGGCGGCGGCACAT 4573 33 97.0 34 ................................C TCAAGGCACGGCAGACGGCGGCGACGGAGATTAA 4506 33 97.0 33 ................................C AGCATGATGTCACGTTTGGCAGTTGCTACGTGA 4440 33 100.0 33 ................................. ACGAGCGCTACCGGACGCTGGACATGGAATACA 4374 33 100.0 33 ................................. ATGAGGCGTCGAACTGGAATTATCTTGTAGCCT 4308 33 100.0 32 ................................. CGTATCGGGACGGATTGACCACGTTGCAGTTG 4243 33 97.0 33 ................................G TGTACTCGCAGTCGCGCATAACGATGGTGCCGG 4177 33 97.0 35 ................................T CGAGCAACAACAGCACCATCAGCATCGAGCATGAA 4109 33 97.0 33 ................................C ACGGCCTTGCGCACGGTGTCGGCGATGGTGTTC 4043 33 100.0 33 ................................. TCCGCATACTGCAGCCGGGGCGCGAGGGCGAGG 3977 33 97.0 33 ................................G ACTTCACCGCGACCGACCAGACGCTGGCCGACC 3911 33 97.0 32 ................................T GCGCAGTTTGCGCCGACGTAACGCCGAGTTTG 3846 33 97.0 34 ................................C ATGTACAAGGATGCGAACGGCATCGTCCGCGTCG 3779 33 97.0 32 ................................T GAAGCCAGACCTTGGCGCCGGCCAGGTACAGC 3714 33 100.0 32 ................................. AGGACGCTTCGGGCACTGTGCAGAAATACGCG 3649 33 100.0 34 ................................. AGAAAGGAGGACGCTTCGTCTTTTATCCTACACG 3582 33 97.0 33 ................................C ATATCGATGCCTACAGGGTGTGGAGGATAGAGC 3516 33 97.0 33 ................................G GCGTGTTAGCGCCGCCGGTGGTGTCGATCCACA 3450 33 97.0 33 ................................T CCGCCTTGCTCAGCAGCCAGCTTATCGACTGGC 3384 33 100.0 35 ................................. ATCCCCAAGTCGATGTAGTCCGAACCGTACTCTAC 3316 33 97.0 34 ................................G GCTCAGAGCGTGGCATAAGCCACGCGCGCATGAT 3249 33 100.0 33 ................................. CCTATCGGGACGGATTGACCGCGTTACAGTTGA 3183 33 97.0 33 ................................G GCTTAACGGTGTCGCCAATGCGATATTCAACCG 3117 33 97.0 35 ................................C TGTACGCCATGAGCCTCAAACGTCTCAAGCGCAAA 3049 33 97.0 35 ................................C TTCGCCCCACATACTTGCGCGCGAGAATCGCAAAG 2981 33 97.0 33 .................C............... ACAACGTCTCGTTCGACCGTTGCCGGTTCAACC 2915 33 100.0 34 ................................. CCGTGGTGCTGGACGAAGAAGGCGAAGCCACCGT 2848 33 100.0 33 ................................. TCACCACCGAACCATGCCAATACTGCGGCAACC 2782 33 97.0 34 ................................C CACCGTCAAAGCAGCCCGCGGCAGCGGCACTGTA 2715 33 97.0 33 ................................C CCAACGCTCGAATCATCTTCGTGCCCATGCTCT 2649 33 100.0 33 ................................. GTATTTTCTGCGTCATATCATCGGAACGTTTGA 2583 33 97.0 33 ................................T CAGCGGCGCGATGGAAAAAGTCAACGGCATCCA 2517 33 97.0 33 ................................T ACGCCAACATCAACGCCAACCTCATCAAGGCAG 2451 33 97.0 31 ................................T TCAACCAATGCAAAGCACAACACGCGGTCTG 2387 33 97.0 35 ................................C GCACCTACTGTGCCGAGCGCGAACTCACGATGTCT 2319 33 97.0 34 ................................C GCACCTACTGTGCCGAGCACGAACTCACGATGTC 2252 33 100.0 34 ................................. CGGCATCCGCCCTGTCCGCGACCTCGCTCACGGT 2185 33 97.0 33 ................................G CAACAGATCGGCACGCTCAACAAGCAGATAGCA 2119 33 100.0 32 ................................. CCCACAAGCGGGGCATGACCCATGAAGCGACC 2054 33 97.0 32 ................................G TTGTCGTCGGCACCACATGGGGCACGGGACAG 1989 33 100.0 34 ................................. CCGCGCAGACCGCGCCGTACTAGCCCCGTCAAGG 1922 33 97.0 34 ................................G CCAAGACCCGGCAGCTCGGCGAACGCACCGCGAA 1855 33 100.0 33 ................................. CCGCGGATGAGACCGTCATGTTCCGCCTCACCC 1789 33 100.0 34 ................................. CTGCTTGAAAGAGTTGATGTAGGAGGGAAGGAAA 1722 33 97.0 33 ................................T CCGTGTCGTACCAGCCCTTAAAGGGATCAGTGT 1656 33 100.0 32 ................................. GCGTTGTCAATAATGGCGGCGCGCTGGCTACC 1591 33 97.0 34 ................................C TCACCCAGATGGCCGAGAAACTCGCCGGTGTCGC 1524 33 97.0 34 ................................C CCCTTGTGGTACGACGGGGAGTACCACTATGATG 1457 33 100.0 32 ................................. GCTCCCTGTCGGGGGAGCCGTGGGCACTCACG 1392 33 97.0 33 ................................T GCGTCAGCGCGTCGAGGCGCAGGCTCACGAGGC 1326 33 97.0 33 ................................C TCATCGACATCCCCGTTATCAATGAGATGACCC 1260 33 97.0 33 ................................T AGCAAGATGACCGTCCTCTCTGGCGATGGCGAG 1194 33 100.0 34 ................................. CGTGAAACGTTTGGAGGAACCACCGACTTGGAAA 1127 33 97.0 33 ................................G AGAGGGGCGTGACCGTATGGAGCAACCCGGAGT 1061 33 97.0 0 ................................C | ========== ====== ====== ====== ================================= ==================================== ================== 60 33 98.0 33 GTCGCACCCCACTGGGGTGCGTGGATTGAAATA # Left flank : GACGAATCGCAAGATAGCCTGCGTTACTACAATTTAGGGGCGAAGTATTCTTCGAAGATTGAGCATCGCGGAAGACAGCGGCACCTGCCAATCGATGACGTGATGATGCTCTAATGTCGGTTCGTGTGACGGTTTTCCATGATGACTGGGCAATGCAAAACCTTACTGTGATGAAGAACAAGGCGGATAAAACGAGGTAGGACAGTATAGGACGATACGATTAAAATCGTGGCTGAGCATCGATGCTTGATGCTGCAGCCATGTGACCAGCGCGAACTCTGAGTTCTCATGAAATACTTGTTCTTTCGCACTGAGATTAATGAATGCTTGGAGACTGATTATGTTCTCCTCGTCGTTTGATAACTCAAAAGTGGATGGTCTGTTGATGTTTTTGGTTCGAGAATTTGTGTATTGAGCGATGTACATGGATTTTCGCGATAAAATCAGTTTTGAGAACAGACGGAGCTTCCATATTATGGAATGCTATGCCCATTCTCGCG # Right flank : CGATATGATTATACCTCATGGCAGAAAAGACCGGTCGCACCCCGGATTCAATTTGTAAGCGCAACGCTTGTGTTCGGGCTGGCTGCCTTCGATTGTAGCCTGGCGATCTCCTCGTCCCACACCTCGTTGGGCGTTTTGTAGCCGAGGAGCTTCATCGGGGTGTCGTTGATCTCCCCGACGATCGCGTCGAGGTCCTCCTGGGCCAAGTCCCCGAACCCGGTTCCTTTGGGCAGATAGCGGCGGATCCTGCCGTTCCTGTTCTCGTTGCCGCCACGCCGCCAGGAACCGTACGGGTCGGCGAAGTACGTGAGCATGCCCAGCGCCTCGTCCACCAGCATGTGCAGGCTCGCCTCCGTGCCGTTGTCCCACGTGCGGTCGACGCGCGCGGCCGGCGGCATGTCCTTGAAGATCTCGTATTCGGCCCTGGCCGTGGCGGACGCGCTCTTGTCGTCGACGAGCCGGGCGAACAGCCTGCGGCTCCTGCGCTCCACCTGCGTGTT # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.43, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCACTGGGGTGCGTGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.80,-7.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //