Array 1 50750-50053 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQOJ01000002.1 Parageobacillus thermoglucosidasius strain DSM 2543 DSM2543_2chrom, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 50749 30 100.0 36 .............................. CGAGGCTATTTGGAACAGCAGAAAGCCGGAGGCAAA 50683 30 100.0 37 .............................. AAAGCAGCTCGGCTAAAATAAACATGGTTCGCAAAAT 50616 30 100.0 37 .............................. GCTTCCAAATCACAAAAAGAAGTTTCAGCAAACAACT 50549 30 100.0 35 .............................. ATTGACGTAATGCTTTTTCTAGTATGTTTTTAGTC 50484 30 100.0 35 .............................. TTGGCGAGGTCAAGTTCCGTTACAAATCCGTAACC 50419 30 100.0 37 .............................. TTACTTTAGCTGAGTACAAGGAAATTACAGGAGAAGA 50352 30 100.0 37 .............................. CAGCTATCTTGAAAGGTGATTGGAAAGGCGCTTGGGA 50285 30 100.0 36 .............................. CATTTTTGGCAGATGATATTACACTTTTTAATATAT 50219 30 100.0 38 .............................. GTGGATGACAAACATCCAAGCGGCGCCATCACTTATAC 50151 30 100.0 39 .............................. GCGTGCTGATAACATGCGCTGCAATCCCGCGCCATGCGT 50082 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 11 30 100.0 37 GTTTGTATCTTACCTATGAGGAATTGAAAC # Left flank : TCGTAGCGATTTGGCAGTTTACGAATATATGGAATGAATTTTTATTTGCCGTCACGATCACGACATCTTCCCAGCAGCCGATTATGGTCGCGCTGCAAAACTTATCGGGCAGCCAAATTGTGCAATGGAACGTGCAAATGGCAGGAGCGCTGCTAGCCGCGCTGCCGACCTTGCTTGTATACATTTTTCTTGGCAAATACTTCGTTCGCGGTTTATTGGCCGGTTCGGTAAAAGGATAATCACGCATGCCAGCAAAAGCATAAGAAAAATGTTTGTCGGAAAAAATCATTCCTCTTCTTTTAAGAGCTGACGGGGCTATGCAGGCGATCCGTTTGTCGTCGACCTCCAATCGTGCAAAAATCCCAGGGGATCGACGACAATTTCTTTTTTCCCTTTATCCTTACGGCCATCATCAATCCGCTCTATTGACGGAATTTTCAAAATGGCTTATACTGAATTTAGCCTTCCTGGAACATATTGATTTATCAATATTTTTTGGG # Right flank : CAACTTCGCTGACGCTTTTTGCTGCCACTTTTTGAATGGGTTCAAAACGGATCAGTAAACAAACAAACCGCTGATTTTCAGCGGTTTGTTTGTTGATAAAGGTGTTTTAGCTAAGATTTTGCTGCTTTTATTGAGGTTGATCCTAATATTTTTTCTTCCATAGGTAAATGCAAAACAAATGTTAACAGGGGATAAGAGAGTCCCCATGATTCAACACGATCCGGAAAATTCCGCTATATTCTCCGGTAATCTTAACATCGCCGGCGTCTCTCTGCTCTTTGCTTTGGAAGGCTTGACGAAATCTTCAGCAAAATGATTGCAGGGCATTCCTCGCCTTTGTTTTTTTGCTGTTTGAAGGCTTGTGCGGTATAGTTTTCTTTACACAATAAATGATTTGCTGCGATTGCTGCGATAAGCACTGCCCGGATGATCTTCTGGCAATAAGCTGCTGCCGTAATTAAATAACTTTTCTCGTAACGTTCCCGGTTTGTATTCCGTCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 1222259-1222420 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQOJ01000001.1 Parageobacillus thermoglucosidasius strain DSM 2543 DSM2543_1chrom, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 1222259 30 100.0 36 .............................. ATATCCTGCATATTCTCCGCATACGTCAGAGTTAGA 1222325 30 100.0 36 .............................. ATTTCAACCTCAAGGCTTTCTCCGTTTGCCTGTTCA 1222391 30 96.7 0 .................A............ | ========== ====== ====== ====== ============================== ==================================== ================== 3 30 98.9 36 GTTTGTATCTTACCTATGAGGAATTGAAAC # Left flank : TAACAGGATATCTCGAATCCGCACAGCAATTTGAAGTGTCACATTTTTTTCCTGCAACCCATTTCCAATTGCTCCGGGATCTGCTCCGCCATGTCCTGGATCAATAAAGATTTTTACCATTTCTCCTCACCTCCATAAATAATTTATGTTTGTTCGCTGGACGTGCCTGTATAAAAAGCCTTGTGCATTTGAATCACCACCGTAAAAAAGAAAAAGCCACCTACCTAACAGGCAACTTATTTCCGTTCGTGGCATGCCCTCTCGCGAATAAATATAGGAAAGGGGATTTTTGCACATTCTTTCCTAAAACATTGCATTCCTAAATATAATAAATGCCGTCGACCTCCGATCATGCAGAAAACCCAAGGGATCGACGACAGTTCTTATTCCCTTTTTCCTTAGGAATCTTCATCATTCCCATATATTGACACAATTTTCTTAATAGCGTATACTTTATGTAACATTTCAGAAAAATGCTGATACATCAATATTTTTTTTGG # Right flank : CCGATTCACCCGATCAACAAGAGTTTTAGAACCAAAATCATTTGTATCTCCCTATAAGGAATTAACCCTCTCTGTCCGCTGCCTGACTGGCCTTTGAAGTTTTTGAACGAAATTTGCTAGTGATAAAAAAAATCGATAAAGCCGACAAGTTGTTTTATATTATGAAGGCAAAATGATAAACAAGGTTTCGCTCATGTTAGTTCACTTGTCTTATGGCTCTTGCCGGAATCAGCTGGCTGGGCAATTAGGAACCGGTGTTGCTGCGGCCTGGTTAGGAGCTAGTGTTGGCTGGTTACTTACGATAGTAAGGAGGATATAGATGTATAAAAGTGGCTTTAAAACATTCTGGGCAGAAAAGTCACCATTTTTGCTCGAGGAACTTTTCAGCAACTCACTTTTCTAATTATCTTTTCCCCTCTTTTCACAAGCATGTTTAAGGAAAAAGTTTTGCTTTTGCCATCTCTGTTTTATTTATTACAATCATTAATTTAGGTGTGGAG # Questionable array : NO Score: 8.31 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 1229921-1231281 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQOJ01000001.1 Parageobacillus thermoglucosidasius strain DSM 2543 DSM2543_1chrom, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 1229921 30 100.0 35 .............................. CTTCATCCAGCGTCAAGTCGTTCATTTCACTTGTC 1229986 30 100.0 36 .............................. TTGGGTGGCGCTGTCGCGCACTCCCTTGACCCTCAA 1230052 30 100.0 37 .............................. TTTCACATTCCGGCGCTTTTGTTTCAAGAACAGCCTC 1230119 30 100.0 38 .............................. TCGACGGCCCCTGAATTAGATCAGCTTGGTGGTATCTC 1230187 30 100.0 37 .............................. CTTCAAATGGGATGACTCTAACTATATCAGGATTTCA 1230254 30 100.0 35 .............................. ATTGAAATGATATGCGACTGGAAAGCTGCGGTGAT 1230319 30 100.0 36 .............................. CGCTTTCAAACGCCATTAAATCGTCACCTCCTCGGT 1230385 30 100.0 37 .............................. TCTGGAACACAAATGAAAGGAGTAATAACTGGATGAA 1230452 30 100.0 38 .............................. TCCGTCGAAGAAATGATTTCTTTGCTATTCCGGCTCTC 1230520 30 100.0 35 .............................. AGAATATCCATTGAGTAATTGCACTCGACCATGAT 1230585 30 100.0 37 .............................. CACTATTTTTTGTTATTTCGAGTTGAGCAGCTGTTGT 1230652 30 100.0 36 .............................. ATGAAAGCACCTTCTTTAGAACGCGACGCTCTCATC 1230718 30 100.0 37 .............................. GAAGTAATTAGTCAAGCAATTAGGTGGCAAGGCATGT 1230785 30 100.0 37 .............................. TCACGTTTCGAGATATGAGAAAAGAACACGGTCATTT 1230852 30 100.0 35 .............................. TGAAGCACCTTGGCGTGAAGAGAAAGTTAAAAAAG 1230917 30 100.0 36 .............................. TGACTTCTGCCAAAATCGCTCTATCCTCATTGGCTT 1230983 30 100.0 37 .............................. CAGGCGCAGCGAACGCCTTATAGGCACAGCGAACGCC 1231050 30 100.0 36 .............................. TCAAGCCGGCCGATTCGCATTCTTTTGGCGGACGAG 1231116 30 100.0 36 .............................. TAAACTCAGTAATGTCTGGCTGCCAATCTGCAAGCA 1231182 29 90.0 40 .....C...............-...A.... CTAAGAGATCGTTCTCTTCTCTTATCTCTTAGGTTTTTTC 1231251 30 76.7 0 ......GC...G.T...G.AA......... | C [1231262] ========== ====== ====== ====== ============================== ======================================== ================== 21 30 98.4 37 GTTTGTATCTTACCTATAAGGAATTGAAAC # Left flank : AGTAAAAACGGCCTGCCGAGCTTGACAGTGGTTCCGTGGGAATCAAGCTGCCCGTCAATTGCTTCGAATGGAACGCGCAAAAATTGATATCCCGCTTCATCGGCAATTTTATAATCAAATGAACCATGATCATAATCCCAATTTCCGCCAATGGTATAACCAAGCGGCTTTAACAATTGCTCCAATTGAAATAGAGGAAACGTTTTCCCTTCCAACTGTGATGGAATTTCGATCATCGCAAACAACCTCCTTTTTCACCTATGTTTCCCTATTCGCGCTCTTTATATGATTGTTATGGAATATTGCCTGCTACATAATGCCCCCACACTGTCAATGTCGTCGACCTGGAATAGCGCAGAAAACCCAAGGGATCGACGACATTCCCTTTTGCTGCTTTTCCCAACTTCCATCAGCACCGCCGCATATTGACGAAATTTTCAAAACCAACTATACTAAACATAGCTGCTTTCGAAAAAGCTGATATACCAACGCTTTTTGGG # Right flank : CACTTACTCCGGCTGCCTTCCGATACGCAATTCAGTTTGTATCTTATTATGAGGAGCAAAACAGGTGTGCAGCTGCATTGTTGCTACCTTTGCTGCCACGGTTTATATTGCAAAACTTAAAACCTCGGTGAATCTTGTTTTTTATTGAGCAAGCCATTCTTATTGCATATTACCGTGGGTGTCAGCGAAAATTTGCTACGATAAGCGCGAAACACAGATGCCTGAGACAAAAACACAGCAAAATTACTTTTTTTACAAATAAGATAAAAATCCCTTCCCGCAGCGGAAGGGATTTTTTGATAAGCAACCGGTGGCAAGTAATGTCTTCGCATGCAAAAAACGGAGTGCATGATGCACTCCGAAAATCCGTTCTGTTATTTCAAGCGTTTTTCCAGTTCCGCTTTTTTCTCTTCGTATCCTGGTTTGCCAAGGAGGGCAAACATATTGACTTTATACGCTTCTACGCCTGGTTGGTCAAATGGATTTACCCCTAATAAGTA # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCTTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 446188-448092 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQOJ01000003.1 Parageobacillus thermoglucosidasius strain DSM 2543 DSM2543_3chrom, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 446188 30 100.0 37 .............................. TGCTGATAATGCGTTAATTATTGACACGAAAAAATCT 446255 30 100.0 36 .............................. ATCGCGGCCGTAGATGATGTGTACGGAACGTTTCAC 446321 30 100.0 37 .............................. GCAACGATGAACTCTAATGTATCGTCGTTGCTGTCTC 446388 30 100.0 38 .............................. CATTTTCCGCTTGGTGAAGCACTAGAAGAGATGCGCAC 446456 30 100.0 37 .............................. ACTTGGTTGAAAAACCTACTGATGAAAAGATACGAAA 446523 30 100.0 37 .............................. TGTTTTCTTGAGGTTTTTCTAATGTTAACTGTAAAAT 446590 30 100.0 36 .............................. TCAGTTGTTTCCTGCTGTTTTTCTTGTGTATCCCCC 446656 30 100.0 36 .............................. CCACGATGTCATGACATTGTATAGACGTTCCAGATA 446722 30 100.0 36 .............................. TGTTTTTTCGGATAAGGATTTTGAGAGAGTATTAGA 446788 30 100.0 38 .............................. CTAATCTCGAACCAGTCCATAAAATAGTCATCGATCTC 446856 30 100.0 37 .............................. CGGCTATCAAGCGAGAAATAAGCCTCATCGACAATCA 446923 30 100.0 36 .............................. AGGATTGGAGAACATGCTGACCAACATGTTCGTCCA 446989 30 100.0 36 .............................. CTGTAGGTATGCGTTGTTCAACATAAGTAGGGAAAG 447055 30 100.0 36 .............................. AGTCAACAGTTTCAAGTAATTCTGTTTGCTTTCCAG 447121 30 100.0 39 .............................. TCAGAACTAGCGTAGAGGATAGAACAGGTAGCTATCGCC 447190 30 100.0 39 .............................. ACGCACCTAGATCACTTATTACCTTATCTGAACTTCGAT 447259 30 100.0 38 .............................. TGAAAAGTATATAAAGCATTTTAATATTGGAGGCGATT 447327 30 100.0 37 .............................. TCCGAACGATAGCTTTCCGACACTTTGCCGATGGCAC 447394 30 100.0 36 .............................. TCCCGCAGGAAACATCTCCTTTGATGAGAGTTTAAA 447460 30 100.0 35 .............................. AAGGAATATTCGTTCGAATCGTTTTTGCCGCGTGA 447525 30 96.7 35 ....A......................... TGGTAATATGAAAGTATGGGTAGATCAAGATTAGA 447590 30 100.0 37 .............................. AACAATGCGGAAGTGATTCCGATTCCGACGCGTCCTG 447657 30 100.0 38 .............................. ACCGATAACGGTGGAAGTGCTGTTTCAACTATCGCAGA 447725 30 100.0 39 .............................. TCCTTCCTCATAAAACCCTATACCGAAACGTATGGACGG 447794 30 100.0 38 .............................. TATCTTTGAGCATGCTTTTCACTTCCCGTTTGTCCGCT 447862 30 96.7 36 .............................T CTTTTTCATTCATGAGTATTCCCCCTTCTTTGTTTA 447928 30 96.7 39 .............................T TCAGCCGCCCCGTATCCATATGCTCGTACCATTGGATTC 447997 30 96.7 36 .............................T TTGTGCGAATCATAAAAAACCCCACTCGTCCGAGTA 448063 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 29 30 99.5 37 GTTTGTATCTTACCTATGAGGAATTGAAAC # Left flank : TACGAAAATCAACATGGAGAAAAGCGGACGCATTTCTTTTCGCCATTTGACGCAGAATTTTCTAAGATGGTAGAAAAAAATTTTTATAATAAATTTCAAGCATATTTTCAACAAGCACCAACGGAGAAGGTGACAATAAGCCCAATCCGCGTAACGAAAAGGGATAAGGTGATTACCGTATTCAAAGGGTTCCGCATTAACGCGTGGAATGGTATGTATGAAATTCAAGCACCGCTCCCTTATGTGAAATTTATGTATGACGTCGGCATCGGATCGAAAAATTCCCAAGGTTTCGGCATGTTCGAATTCATTAAATAGCGGCTATATACTTTTGTCGTCGATCCCTAATAGCGCACAAACCCCAGGGGATCGACGACATGTTTGTTTTCTCATTTCTCCCAACAGCCATCAGCACTTTTGAATATTGACGCAATTTTCAAACTGACGTATACTTTATATATCCATTATTCGCCAACCTTGATATATAAGCGTTTGTTGGG # Right flank : CGTGGTCTGCGATTTGACAGCTTTCGTGTCGCGTGCCTGTTTTATATCTTATGGACCGATTTTGCCTGTTTTTATCTTAGCTACGAAGATTGTCCCCTTCTTGGCGCTTGCCGCTGTGAAGGGCTTTTTTGTTGTAATTCACCGCCACATTTGTTATAAAGGTGAAAAAGGGAAACAATAACAATAAAACAAACATGGAAAGAAGTTTTGAAAGCATGTTCCGTATTCTTAAAGCAGAAAAGACGGTTGATGTTTAAAATGCGGAAGTTTGCTGAATTGGAAGTAATATAACGGAAAGGGTAGAGTGTGGATGGGAGTATTGGACAGTAAAAAAATTATGGAAATAAGAAGCCGTATTGAAAAACGAGTAGTGACGCTGCCCGATGGCACTACTGTTCCATGCATAGGTCAAGGAACATGGCACATGGGAGAAAAGCCCCAAGAGAAAGCGAAGGAAATAAAAGCCTTACAACTTGGAATAGAATTGGGCATGAAAGTTA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 1913370-1915807 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQOJ01000003.1 Parageobacillus thermoglucosidasius strain DSM 2543 DSM2543_3chrom, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1913370 30 100.0 39 .............................. CTCAACGATGAAGAATCCATACTATAATATCTGCAGATA 1913439 30 100.0 36 .............................. TTGTGTGAAGTTCTTTTTCTTCCCCTGTTGTTGAAT 1913505 30 100.0 35 .............................. TCGTACCATTCGACTTTGGTGTATTCGTTGTTGTC 1913570 30 100.0 35 .............................. ATGCGAGAAACAAATCACTTTCTCCAAACAAAAAA 1913635 30 100.0 35 .............................. TCTTTCCACGCTAATGATAAAAACCAAGCCATGAT 1913700 30 100.0 36 .............................. ATGGCCTTCACTGCGGAACGCGGCAATTCGAACCGT 1913766 30 100.0 37 .............................. AATGAAAGAAAACAAAGAAAAAGTCATTGACGTTTCT 1913833 30 100.0 35 .............................. GAGTCTTTAGTTAGGACGTTTTCTGATTCGGAAAC 1913898 30 100.0 38 .............................. CGCTACATATCTATCGAAAGGAGGGACGAGTATGGCAC 1913966 30 100.0 38 .............................. TGGAAAAGGAAGTCGGGCATTGGAAAGAGCTTTTCGAA 1914034 30 100.0 36 .............................. TTGGATATCCATACTTTTCTATCATGGCATGCTTCG 1914100 30 100.0 36 .............................. AGAACACCAGCAATAAATGATTCCCCCGGCGAACAA 1914166 30 100.0 38 .............................. AAGCTGGCAGCGTTCGGCAGGCGCTCCGCCTGTCGAGG 1914234 30 100.0 37 .............................. CGTCGAATTCGAATTTTTCGCCGTAAAAGTCTGTGCC 1914301 30 100.0 36 .............................. AAAGGTGGCCAAGGTGTTTTGAAGCGCGGCACCGTG 1914367 30 100.0 37 .............................. ACAAAGAGCTTGAAAAAATTCCGGTCCGCATCGACGA 1914434 30 100.0 37 .............................. TTTTCTTCTCGGAGCCTTTTCTTTGCGAGCCGTATTG 1914501 30 100.0 37 .............................. CACGATGAAACCACTAGGAATTGTCCGCAAAATCGAC 1914568 30 100.0 35 .............................. ATCGGTCTAACCGATAAACTAGTACAATATCGATA 1914633 30 96.7 37 .T............................ GAACTGTATGCTATATCTTTTTCAATATGGCTGAACA 1914700 30 96.7 38 .T............................ AATGCCCCGACTTGCACGCGATAAACCTTCCCTTGTGT 1914768 30 96.7 35 .T............................ TGTAGGGAAAGCCAGTGGATGGATCGCGTCTATTT 1914833 30 96.7 38 .T............................ AACAAGTAAATATGAATGAACACCAAGCTGCAGCTCTT 1914901 30 96.7 37 .T............................ TAGCCTCTCTAAGTTGTTTCCAATAATCAAATGATGG 1914968 30 96.7 39 .T............................ AAAGTATGTAGCCGTTTTTCTCTGCAATGCGATCCCATG 1915037 30 96.7 37 .T............................ TTGATAAGGCGGTGACATTCTAATGGCGCTCACACCC 1915104 30 96.7 39 .T............................ ACGATAGAATCATGCTTCTATCTAATGAAATGATATTTT 1915173 30 100.0 36 .............................. ACATTTGCAAGGTGGGAAAATGAAGAAAAGTATAAG 1915239 30 100.0 37 .............................. GAGCCGAGTCGCCGCGTTAGTTTGGGGTTGAGCTAAT 1915306 30 100.0 37 .............................. GGCATCTCCCTCGAGGAACTAGCCGCCGCAACTGAAG 1915373 30 100.0 39 .............................. TGGAAGAAAAAGATTTCGAAAATAAAAATAAATAAGGGC 1915442 30 100.0 37 .............................. AATGGCTAGCGGTCGGGAAGCGTGCCGGCCTTTCTTT 1915509 30 100.0 36 .............................. CTCACACCCTACCAACACCTTATCCACAAACTTATC 1915575 30 96.7 38 C............................. ATATATCGAACCTTCACCAACATAGCTCGCTGCGTTGT 1915643 30 96.7 37 A............................. TCGGCTTGCCATCATCAGCGCGTAGGTCGCCATCCCA 1915710 30 93.3 38 C...G......................... GAAGTAATCTTGAAAACAGCAGCACAGGCTGCCTTGGA 1915778 30 86.7 0 .T..................A....A..G. | ========== ====== ====== ====== ============================== ======================================= ================== 37 30 98.6 37 GGTTTTATCTTACCTATAAGGAATTGAAAC # Left flank : CACTCAGCCGCTTTTTATGAGGATATAGAGGGAACACAGGAGGTGTCTGCAGCCGGTCTTTTCTTTTCTAATGAATACTCAGTGGTTAAAAATTTTGAATCAACAATAGATGTTTGAATTCATTATAGCAACATATATTTTTGTCGTCGATCCTTAATAGCGCACAAACTCCAGGGAGTTAAGTCCATATAATTGTGTAAAAAGGGAAATAGAAAAAGAGCCATGTTGCTTCCCCTTTGGTAGAATAAACAGTGGACCAAAAACACCAAACATAAGGAGGAACTTACCTACCATACGTCAAGTCATCAGGTCCATGTTGTCTATCAAAGGGGAATTTACACAATAATTTGGACTTGACCCTCCAGGGGATCGACGACATGTTTATTTTCCTATTTTCTCCGACAGACATCAGCATTTTTTTATATTGACGCAATTTTCAAAACGGCGTATACTATACATATCCATTATCCACCATCCTTGATATATTAGCATTTATTGGG # Right flank : CACTGACAATCTATATCCAAAAGAGCTAACACTTAATGATCCCCCTTTAAGTGGACAGTGTAAAAAGCCCATTTTTAATCAATGGGTGTTCCACTATACTTGGAGGGGATTTTCGCATGAAAAGGATAAATATTTCACCGTTATACAGAGGAATTCCAACAAAGAGTGATTTACATGTATGCAAAGGGAGAAAATTGCTATTAAAAATTAGATGGTGAAATGGTAAATTTAATGGATTATAAAAAAGCGCTAGAACGTATTTTAATGGGAAAGCAAAGAAAAATCGATGTCGGAAGAATCGACGAAGAATATTGCATCACTGTAGTGGGGATTGGTTTGGATGGCAAAGTGGCTGAAGTAAATAATATTTCCAAATACAAAAAATGGTTTAATTTTATTAGATTGGGTGCTCTTTCCTATGTACTTAGTTTCTTGCAAGTTTTATTAAAATACCGCCCTGTCAACATTCAATTAAATGTTGATGGGGAGAAGCTAGTTTT # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTTTATCTTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 1925258-1927554 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQOJ01000003.1 Parageobacillus thermoglucosidasius strain DSM 2543 DSM2543_3chrom, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1925258 30 100.0 37 .............................. TCAAAGGATACAAATTGAGATGCTTGTTGCAGTACCG 1925325 30 100.0 38 .............................. CACTCACAATGAGCACCCTAAAAATTCAAGTATTCGTG 1925393 30 100.0 38 .............................. TATATAGATCAAACAACAACTCTCTTGGGAGTTCGTTT 1925461 30 100.0 37 .............................. TGGCATTTGTGAAGCAGCGATACCTTTTGCCATCCAG 1925528 30 100.0 37 .............................. GGCGTTCACCCCTTCGATTTTGATTCCGAGGAGGTCA 1925595 30 100.0 37 .............................. AAGGCGTAAGAAAAGAACACTGATCATTAAAATTATT 1925662 30 100.0 35 .............................. TGATTCTTATACCACTTTGAAAAAGCGACAGAATC 1925727 30 100.0 38 .............................. ACACCAGGCATCTTGAAGACCGTGACACTCTTCGTCCC 1925795 30 100.0 35 .............................. ATGACGCAAACCAACGCCACTAATTGCGTCCTCGC 1925860 30 100.0 35 .............................. TTTTCGTTTTGTTTCCGCAGCGAATGAACGTTTAT 1925925 30 100.0 36 .............................. AACGCCGTGTCGTTGCTAGCAACCGACGGCAAAACC 1925991 30 100.0 37 .............................. CAGTTTTGGTTGATATCATCGATGGGGTCGAAAGTGT 1926058 30 100.0 36 .............................. TCGGTTATGCCGCTGGATTCATGGTATTGAAATCCA 1926124 30 100.0 39 .............................. TAAAATTACACATGACTTGGCGAAGAAAATCGCGCAGGT 1926193 30 100.0 37 .............................. TCAAACGGTCGATGATACCGAGCCGGAACCCTAACAT 1926260 30 100.0 35 .............................. GGCGAATAAAATCTGACGAAAATTCGTTCGAGGGG 1926325 30 100.0 38 .............................. TAATAAATATAATTCGTAGTCACACTAGTAACCTCAAA 1926393 30 100.0 38 .............................. CACTACTGCATGCACGAACTCCGCTATTCACCATCACA 1926461 30 100.0 37 .............................. CCAAAATCACTGGACAGTATTGGGTAGGCATACCGAG 1926528 30 100.0 36 .............................. CAAGTCATGTGATATGACGTAAATGAACCGTCTGTT 1926594 30 100.0 37 .............................. GGGAAGTTGCCACTAAAGATGTATCAAAAGACGGAAC 1926661 30 100.0 37 .............................. ATTTCGGTCGAACGAGTGCATCCTCCAAGAATCACAC 1926728 30 100.0 38 .............................. TGTTTATTTAAGAAAGATGAAAGGATTGGCATGTATCC 1926796 30 100.0 38 .............................. TTTTATAAACAAGCTTTTGGTACGGATTTAGTTGGCGA 1926864 30 100.0 37 .............................. AAGCCACGCTGGGCAAACGATGTGCCAAGCCGCAGAG 1926931 30 100.0 37 .............................. ATACAATGTTAAAAGATTTATATGCATTAGGCATGAC 1926998 30 100.0 36 .............................. TCTATTCTTCCGTGATAAAACAAGTAAACTATCTGA 1927064 30 100.0 35 .............................. TTTTGATAGTCTGTTTTCACTTTTTCTAATTCCTC 1927129 30 100.0 35 .............................. AAACGCAGATGGAGGCTTTATCGAAAGGCGTCAAC 1927194 30 100.0 36 .............................. CAAGAAAATTTGAAGATTGGAAAAAAGGATACTTGC 1927260 30 100.0 37 .............................. AGTCGTTCATGGTGTCATACGGAATGACAATATCATG 1927327 30 100.0 35 .............................. AGATCAACCCTCGCGATAGTGATGCGGTCAATCTG 1927392 30 100.0 36 .............................. ACGGAATGGAGGACGCAAAATCATGACGCAAACAAC 1927458 30 100.0 37 .............................. ATGGCGGCAACGCACATTTGCAAGTAACAGAACTGTC 1927525 30 93.3 0 .................G.A.......... | ========== ====== ====== ====== ============================== ======================================= ================== 35 30 99.8 37 GTTTTTATCTTACCTATAAGGAATTGAAAC # Left flank : ACAGCATTCTCTTGACATTGAAGCAGAAGAGATCCCATCTATTCAAACACTAGAAGACATTACACAATATCTTATAAAAATTAATGATTAAAATAAAAAATTTTAAATATAGAAAGAAGAATTCAAACGCCAACAGACAAAGAATAGCTAATCTTAAGTCAACTCGCGCGGCGACAGCTTATTGCCAGCATTCAGCCGCTTGTTATTTTAAAGACAGGCTTTAAGGGTATATAGGGACTGTGGTTGGTCTTTCCTTTTTCTTAATGAATACTTAGCGGTTAATCGAATCAACAATAGATGTTTGAATTCGTTGAATAGCAACGTATATTTTTGTCGTCGATCCCTAATAGCGCACAACCCCCAGGGGATCGACGACATGTTTATTTTCCTGCTTTTTTCTACAAATATCAGTATTTTTCCCATATTGACGCAATTTTCAAACTGGCGTATACTATACATATCCATTATCCACCATCCTTGATATATTAGCATTTATTGGG # Right flank : CACAGAAACTGGAACTGACTATTCAAGATGTGTGCTCTTCCGACACTCTGTGTTTGCCGCTTAACTATGAGAAATAAGTCCTGTACAAAAAGCACATCAAAGGTTGCATGTACGCAACTACCATGATATTCAACCATGACAATTGCTTTTATTAGCGCATTACGGAACCGTTAGTGCGAAAGCCCCGAAATTGTGGGCTTTTTTAGTTTCGTTGTTAATTTTTGTTGATATATGCCGAGAAATTAGTTAAAATTTGGATAGGAAATTAGAAGTAGGAGAAAGGTGGTGGACCGCGGAAAATCGCGTTTCCGTTGTTGATAGTTTCCTAGAGTTTCTTCATCAGCAGCGGTGATGATATAATTGCGGAACGAAAATGTATCAGCATATCGTCATTACATGCGGAATTTCTTTGTTGACTGGAAAAGCGAACGTTTTTTCGATAAACCGTGATGAAACGATGGCGGAAATACGATCGTTACTAGATGTAAAAGAAATCAACA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 4 1936791-1937150 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQOJ01000003.1 Parageobacillus thermoglucosidasius strain DSM 2543 DSM2543_3chrom, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1936791 30 100.0 37 .............................. TCATCTTACTAGAGACAAAGAAGCTTTCCACGTCGGA 1936858 30 100.0 35 .............................. TATCAACCTCCATTTGATTTTTGAAGGCGATTCCT 1936923 30 100.0 35 .............................. ATGATTTGGCCATCTGTTTGGAATCCTTTGGCCAA 1936988 30 100.0 36 .............................. CTCGGCTGGGAAATCGACGCGAACGGGATGCTTGTT 1937054 30 100.0 37 .............................. TTAATTCTCTGATATATGCCTTCTCCTTTTCATCTAA 1937121 30 96.7 0 .................A............ | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 99.5 36 GTTTTTATCTTACCTATGAGGAATTGAAAC # Left flank : AAAAAAGAAAAAGAGCGGGAAGCAAAAAAGCTTTTAGAGGAACGTGAGAAAGAACAAGAACGCCAAAGATAAGAGGAAGAAGCGCGTCTGGCACAGCTTCCTCCAGAAGAACGGCTAGTGCGGCAAATCGAAATGCTTACCAATAGCCAGCAAGATCAAGAAAAAAGTAAATCTGTGCTGTATCAAGAGGTCATCGCGCAACAAAACAAACAGGCCGCACAAGCACTTAAAGCCTATTGGCAACGCATCGGACAATGGAACGTAAAACCAAGTAAGCAAAAACAATACGAAAAAGTACAAGCGATTCGGGCGTTGTTAGAAAGCTAACCCGTGTCGTCGACCTCCAATCGTGCAAAAATTGTGGAGGATCGACGACACTTCTTTTTCTCCTTCTTCCTTACAACCATCAATCATTACTATATATTGATCAAATTTTCTAAATGACGTATACTGATTTTAGCCATTTCAGAAAAACATTGATACATCAGCGTTTTTTAGGG # Right flank : CTATCCAAGCATAGTGTTAGTCGAATAGTAACGTTAAATTTAAAGCTTGAGGACAGATGTTCCCCAAGCTTTTTTGTGCGATTATGATGTGTTTCATTATGTTAATCAGTGTCTCCCATAATATAGGGTTATGATTTTATAGTGTTCTTGTTGTTTCTTGTTGTTGGATTATCCCAGATATCAACGTCAATTCGTGCTTCTATAGTTTGCTGCAGTGTTTCCCCCCTTTGAGCCTGCCAAGACACCGTGTCCTCTTTTCTTTTGGCATAACTGCGAATTTCATCGATTGTCGCGGGTTCATTAACTTCATCTTAATCGCTAATTTTTAATTAGTTATACTAGTGTAGTGTAAAGATCTAATCAAGACTTTTTTAGGTGTATTTTAGAGAAATTATTTGTAAAATAAAGATGAACGTCTCTTCCTAGCCATGCTTTTATTGCAGCCTTACAGACAACTGCTCAGGAGAAGATGGAAGAAGCGTTCTAACATTGGATAAAAG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //