Array 1 355013-354373 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPFW01000007.1 Rhodococcus sp. 14-2483-1-2 RS1A8_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 355012 37 100.0 35 ..................................... GGCTAGATGACCATCATGGACGACATTGCAGTTGC 354940 37 100.0 37 ..................................... GGTGAGCCACGCATCAATCGATGGTCAGATCTCCACC 354866 37 100.0 37 ..................................... GAACCGACGAGCTCCGGATCAGAACGTGACGGTTCTG 354792 37 100.0 41 ..................................... CAGAACTCGACGGTGTACTTTACGAGCGCGACAATTGCACT 354714 37 97.3 39 ........A............................ TTGTAGACACCCCTAGTATGTGATCTCGCGTTGCACTCA 354638 37 100.0 36 ..................................... CGCTACTCGAGTATCGAACCTGCGTAGTGGTTCGCC 354565 37 100.0 43 ..................................... CACGATCGGACCCCGAGACACGGTGACTGCAGCCGCGGTCAGG 354485 37 97.3 39 ...............................C..... CCTCTTGGCACGAAGTGCGCCGATTGTAGCCGCGAGTCC 354409 37 81.1 0 ....G..G.A............GT...C....T.... | ========== ====== ====== ====== ===================================== =========================================== ================== 9 37 97.3 38 GTCCAAGACGCGGTCTCGCCGAAGGGCGAATTGAAAC # Left flank : GGCGAGGCGAATGAATGGACGGGTTTGTCGTGGCGCTGACGGTGATCGCCTGCTACGACATTTCCAATGATGACCGGCGAGCGAAGGTGGCTGCTCGTTTGCAGCGGTGGGGTGACCGCATTCAGTACAGCGTATTTCTCTGTACGATCGCCGCTGAAGAGCTGGCAGCGCTGGTGGAGGCTGTGACCGCCATCATCGATCCGGACATCGATTCGTTCTTCGTCGCGCGACAGTGCGGCACTTGTTGGAACGGCCGCATCATGGTGGGCCAGTCCCAGCCGACACCGGCACCGTTGTTTTGGGCGGCATTCTGACAAAGACGATGGGGCTGAGCAAAGTGGCGAGCGAGGAAGGGGTGAGGGCGTTTGGTGTGCACTCGGTTTCACCTGCGGAAACAGGGTCCTGTCCGGTGATTTTCGTTTATCGAACGGTCTGCCAGCGACTCTGGTGTGCAGAGGTTACACATCAGTGCTGGTCCGGTGGCCGATTCTTGAGGTAGG # Right flank : CGGCAACCATCAGATGTTGAGGCAGACGACCAAAAGCGTCCGATGCGCACTCTCGCGAGTGCAGGATATTGCCGCACGCGTCGGGGCAACTGCTCTGCAATTGCAAGCTGATTCTCCGGGAAGCCGCGATGTGCTGATGCTCGGCGTAGACAAAGTGCAGTTCGGTTTCGGGACCTTTGAGGCCGGCGTCATCTCCGTGCGGAACGGCTGTCACCTGACGTTGTCGGATCAGGACCGGTATTCGAAGTGGCGGCTTCGGGCCGCCGTCGTGCGGCGATGCGCCGCGGATCGTCCTGGGGTAGTGAGTCGATGAGGATGCGTCGGGGATGCGATGCGGGGCCGGTGATGAGGTATTTCTGGCCGGGTCGGACGCGGGTTGCTTCTGCGAGGACCTGCTCGGTTGCGCAGTCGGTGTCGTGTAGTTCGTCGGTGGCACGCAGGGGTTCGGTGTCACGCAATGCGTCGGTGACTATGCGGCGGGGGTCGTATTGCCGCAGGTT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:0, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCAAGACGCGGTCTCGCCGAAGGGCGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.70,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : NA // Array 2 369267-368488 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPFW01000007.1 Rhodococcus sp. 14-2483-1-2 RS1A8_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 369266 37 100.0 39 ..................................... TTCACATCAAGCGATCTTCGTTAGGACTCGCCCCCAGCC 369190 37 100.0 36 ..................................... ATCACATTGCTGCGGCTGTTCTGAACAACGTTCCGA 369117 37 100.0 39 ..................................... CTGCTTGAACCGCACGATCATTTCTGGTTGCTTGGTGTC 369041 37 100.0 39 ..................................... GCTTCCAGGTGCGGTAGCGGTGATGAGGATGTAGATGCC 368965 37 91.9 36 ...A.G....G.......................... GCTCGCATCGGCGATGGTCATTTCGTCCGCGGAAAG 368892 37 89.2 37 ...A.G....G..........G............... TCCGCCGAAGCGATTCCTGCACCCAGCAGTGTCGTGG 368818 37 86.5 37 ...A.G...TG..........G............... AAAAGCCGAAGCCCTCAGCCTTGAACAGGTCGAAGAG 368744 37 86.5 38 ...A.G...TG..........G............... GAGCCGGCGAATGGGGAGGGATCTCCACTACCGGAGGC 368669 37 86.5 36 ...A.G...TG..........G............... TCCAGGGCCTTGACACGTCCGGTCAACTTTTCCAGC 368596 37 89.2 35 ...A.G...TG.......................... GGCACGCCCGACAGGTAGTCGGTGGTGGTCGCTGC 368524 37 91.9 0 ...A.G....G.......................... | ========== ====== ====== ====== ===================================== ======================================= ================== 11 37 92.9 37 GTCCGATGTGAGGTCTCGCCGAAGGGCGAATTGAAAC # Left flank : ATCACCCCAGGTTCTGTGCCGCCTCCAGTTGGGGCTGATGCTCGGGACGACAGTGAACCGAACGTGCAGCTATCGACGACCAGGACAGCCGCGTCGGCCGAAAATTCCGTACACGTACTTCTTTTCGCGACGCGTCATGCCCCGGGTGAGGTGGGCGGACAGCTCGCGCAGCAGGCCGGAGACGAGGGCGCTCGTGTACAAGCGGTACGCCAGCCCATTCGGACCCACACCTGACGCACTGCCACCTGCGGATATTGTGCTCAAGTGACGTTGCGCTGCTGGGATCCGGGTGTTCGGCTCTGTGACTGTCGTGCGTAATACGACGAGGGGAAGACGAGGGGGGCGAGCGGAGTGCCGGTTGCGGCGTCTGGTGTGTACCGCTCTGAGCTCCGGAAACAGCGTCTCGCGCTAGTGCCGGCACGCGTGCAGAGCTTTCCAGAGGTGCTGGTGTGCAGATGCCGTATACCGACGCTGGTCAAGAGCCGTCCTTTTTGGGTAGG # Right flank : GTTCCGGATCTGCCGCCACGTGTACTACGGCGCGATGTTAGATGTGGTCTGTTGCCGAAGGGATGAAACGGAGCTGCACCTGTGGAGGCTGTAAGGTGGCGGGTTTGGTTAGAACTGACTGGTTCGCGTGCCGTCCGCAGAGCGCTTCCTCAACCCGTCGGGCTGAATTAATCACCTCGTAACAAATGGCCGAGCGCCTGAATCAGTTTGAAGAAGTGGTTCCGGAACGGAGTTCAGTCCGATGGTGAACCGCATCCTGAGAGCTTCGTAGCGCCGACGATCGAGTTCAGCAAGAGACCATCTCGACATCTCGTACGTGTTGTCTTACAACGACATGTGTGGAATGGCTGTGAGGAGTTCGGAAACCGGCTGGTGCTTCGCATTGACGGGTCGGGGGAATGATCGGGATTGACGATGTAGTAGCCGGGCGTCTCGTAAGGTGTTTCCGCCTGTTTTGCTTGCTCCGCTGGCCTGCCGCAGGGTCCATCGATTGAACGACA # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:0, 3:3, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGATGTGAGGTCTCGCCGAAGGGCGAATTGAAAC # Alternate repeat : GTCAGGTGTTGGGTCTCGCCGGAGGGCGAATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.50,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : NA //