Array 1 6101-5903 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASHR01000014.1 Agrococcus pavilionensis RW1 scf7180000000235, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================================== ======================================= ================== 6100 40 95.0 39 .T......A............................... CTCCGCCGGAGCGCGGTCTCGAGGCGCCGGCTGCGCCCA 6021 40 97.5 39 ......G................................. ACGCCGCACCGGTCGGTTCCGATCCGCCGGGTAAGCGTT 5942 40 100.0 0 ........................................ | ========== ====== ====== ====== ======================================== ======================================= ================== 3 40 97.5 40 CCCCGCTCGTCGAGTAGGCCCGCAGGGCCGTATCGAGACG # Left flank : CGGATCATCGAGGAGCCGCTGTCGTTCTACGGCAAGGGCTCGAAGCGCGAGCGGGAGCAGCGCGTGCGCGAGCTGCTCGACCAGGTGGCGCTGCCGACCGACATGGCGCGCCGCTACCCCTCGGAGCTCTCGGGCGGCCAGCGGCAGCGCGTCGCGATCGCGCGAGCCCTCGCCCTCTCCCCCGACGTGATCGTCTGCGACGAGCCCGTCTCGGCGCTCGACGTGCTCGTGCAGGACCAGATCCTGCGGCTGCTCGGCGACCTGCAGCGAGAGCTCGGCCTCAGCTACCTCTTCATCTCGCACGACCTCGCCGTCGTCCGGCTCATCAGCGACTACGTCGCCGTCATGCAGAACGGCAGGCTCGTCGAGGCGGCGACGAGCGAGGAGATCTTCACGAACCCGCGCGACCCGTACACGCGGAAGCTGCTCGCCTCGATCCCGGGCAACGAGCTGAAGATCGCGAGCTGACGCCGCTCGCCCGCTCGTCGAGCAGGCCCAAC # Right flank : ACCGACGCGTGAACGGCGCTAGCGCTTCCGCGTGCGGGGGTCCATCGCCTCGCGCAGCGCCTCGCCGAGCAGCGTGAAGCCGAGCGCGGTGATCATGATGCAGATGCCGGGCAGGAACGCGAGCTGCGGCGCGATCGCGAGCTCCGCTTGCGCGTAGGTGAGCATGCGGCCCCACTCGGCCGTCTCCGGCCGCCCGCCGCCGAGGCCGAGGAACGACAGGGCGGCGGCGTCGATGACCGCCGTCGCGAGCGTGAGCGTCGCCTGCACGATCACCGGCCCGACCGAGTTCGGCAGCAGGTGCGACATCGTGACGCGGCCCGTGCCGAGGCCGAGCGTGCGCGCGGCCAGCACGTAGTCCGACTCCCGCTGCTGCAGCATCGACGAGCGCAGCAGGCGCGCGAAGATCGGGATCTGCGCGACGCCGATGGCGATCATCACCGCGAGCGGCGTGCGGCCGAGGATCGCCGCGATCGAGACCGCGAGCAGGAGGTGCGGCACCG # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCGCTCGTCGAGTAGGCCCGCAGGGCCGTATCGAGACG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.10,-12.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [25.0-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 1 169941-169575 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASHR01000028.1 Agrococcus pavilionensis RW1 scf7180000000249, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================================== ============================================= ================== 169940 40 100.0 44 ........................................ GCAGCGTGCACATGCCCACACGCGACTCCGTGGTCGCGACTGCC 169856 40 100.0 33 ........................................ GCAGCGTGCACATGCCTGCGCGCGCCCGGAGCG 169783 40 85.0 44 ..................CA.......CTGT......... GCAGCGTGCACACGCCCACACGCGTCATGTCCTCCCTGGCTTCC 169699 40 100.0 45 ........................................ AGCAGCGAGCACATGCCCGCACGCGTCATGTCCTCCCTGGCTGCG 169614 40 97.5 0 ............G........................... | ========== ====== ====== ====== ======================================== ============================================= ================== 5 40 96.5 42 ATGTGCACGCTCTTGCGGTGCGGCGGCAGCGCGAGCCGCA # Left flank : CAGCCGTCGTACTCGATGCTCAACCGCTGGATCGAGACGGATGGGCTGCTCGACGCCGCGGGCGAGCTCGGCATCGGGGTCATCGGCTTCACCGCGCTCGCGCAGGGGCTCCTGACCGGCAAGTACCTCGACGGGGTGCCCGAGGGGTCGCGGGCCGCGCTCGGCAGCGCGCGTGGATCGCTCGACGCGAGCCTCTCGCCCGAGGCGGCCGAGCGCCTCCGAGGACTCGCCCGCATCGCCGAGTCGCGCGGGCAGTCGCTCGCGCAGCTCGCGCTCGCGTGGGCGCTGCGCGACGAGCGCATGACGTCGCTCACGATCGGCGCGTCGCAGTTCGAGCAGCTCGAGCAGAACATCGCGGCGCTCGGCGGCCTCTCGTTCAGCGCCGACGAGCTCACGGCGATCGACGAGCTCGCGCGCGACGAGCCGGGCGTCGACCTGTGGGCAGGAGCGCGCGACTCGCGCGACTGACGACACCCGCCGGCGGGGAGCGCTCGGCCGCG # Right flank : AGAGCGTGCACATGCGCACGGCCACGAGCGGGTGGGGCCGGCGCTACGAGCGACGGGCCAGTGCGGCGCGCACGCGCCGCGCGCAGCGATCCCCTGCGCCCGCGACGTCGGCCTTCGTGATGCGGACCACGATCCAGCCGGCCGCCTCGAGCATCTCGTAGCGCAGGATGTCGTCGGCCCAGCGCTTCGGGTCGAGGTGTCCTTCGCCCTCGTACTCGACCGCGATCTTGAGCGCGGGATAGCCGAGGTCCGGGTGCAGCTCGACAGCGTCGATGACCACGAGCGGATGCACCTCGGGCTCCGGCAGCCCCGCGAGCACGATGACGCGGCGGGTGATGCTCTCGAAGCGGGAGTCGACGCCAGCGCGCGCATCGTCGGCGGCCGCCCGCAGGGCGCGCGCGCCGCGGAGGCCCTGGCAGCCCTCGAGGAAGTCGAGCAGCGCCTGCAGCGTCGCGTACGGACGCTTCGGGAGGTCGAGGTCGGGGTAGCGCTTCGAGCCG # Questionable array : NO Score: 2.68 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTGCACGCTCTTGCGGTGCGGCGGCAGCGCGAGCCGCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.70,-14.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [25.0-18.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //