Array 1 13447-11210 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTHT010000005.1 Listeria seeligeri strain FSL W9-1222 NODE_5_length_238451_cov_107.566744, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 13446 29 100.0 37 ............................. CCAATATTCGTGCGCGTTATAAAGCCATGGGAGTGGA 13380 29 100.0 35 ............................. ATAGATATCCGCTCCTTTCGTACTACGATTTTGGC 13316 29 100.0 35 ............................. TTCATTTGCTGAAATAACAACATGATAGTTTTTCA 13252 29 100.0 35 ............................. AGAAGAAAATAGACCAAAGAAGACGTGTTGTATAT 13188 29 100.0 37 ............................. AGAAGTATTCAGATACTACAAGCATTGGGTGACAAGA 13122 29 100.0 34 ............................. GATGCTGAAATGATAAAACTAATTTCTGATTTAT 13059 29 100.0 35 ............................. CTTGTTACTTTCAATGACATCGTGAGGCTCGATTT 12995 29 100.0 36 ............................. GTTACCGCTGTTTGTGTATAAAATATTCAGTCGACG 12930 29 100.0 37 ............................. ATGTATTGAACAAATTGAAAGGTTCCAAAGCTCCGAT 12864 29 100.0 36 ............................. AACTTTACGACCACCATATTTCAAAACTTTTTCCAT 12799 29 100.0 36 ............................. AAAATAATTAAAAAACGTTTCAATTTCATCACCTCC 12734 29 100.0 35 ............................. TATATGAACGGAGGTTTTGCTTTACACCCGTCAGC 12670 29 100.0 36 ............................. GCGACAAACAACACGTATAAAAACAAAAAATTAGCG 12605 29 100.0 37 ............................. TTTGGACATGATGCGAAATATGTACTAGAGAGCTATA 12539 29 100.0 37 ............................. CGGAGAAGTTAATTCTTTTGCCAGCCATAGGAGCGCC 12473 29 100.0 35 ............................. TCTTTAGTGCTACGATATTTAACGCGTTGCTTACG 12409 29 100.0 35 ............................. AGGGATTTGATAATACCACCAAGCGCTTTAAAACC 12345 29 100.0 36 ............................. GTTGTTGGGCTTTTTATATTGAAAAGTAATATTTTT 12280 29 100.0 36 ............................. TCCTTATCTATTTATATTTTGTGTTCCTTTACTATA 12215 29 100.0 36 ............................. AAAAGAGGAATAGACTCTAAAGTTTACATTTTTAGG 12150 29 100.0 36 ............................. GGTAATGGATTCTATTGAAACATCGTATTTAGAACC 12085 29 100.0 36 ............................. TCGTGATTCCCCTAACGTGTTATCTTAATCGAAAAC 12020 29 100.0 35 ............................. GACGAAACCGACAGCCTGCTAGAGAACATAGCAGA 11956 29 100.0 36 ............................. GAAATAGTCTTCGTGTTCTTCCGCAACGTCCTTGAC 11891 29 100.0 37 ............................. ATCGTCACGGTTTGAAGTGCTTTAGTCAACGAAGAAT 11825 29 100.0 34 ............................. TTGTGCGAAAAACACAAACAAGATTTAATTTTAC 11762 29 100.0 37 ............................. TTTGTAGGGATTGCTATCCTTCCATTATTCCCGTTAT 11696 29 100.0 37 ............................. AATTGAGGGCCTAGTGGGGTAAAACCCGTGGAGGTTC 11630 29 100.0 37 ............................. CATTACAAATTTCGCACATTATTCCGCCACCTCTTCA 11564 29 96.6 35 .......C..................... GACGCAGGATTTGGTAAAGGCGTAGGTACACGCTC 11500 29 96.6 38 .......C..................... ACTGAATTGGACTTCGAACTCTTGGCCTGTCAAATAAC 11433 29 96.6 35 .......C..................... TATTTATTCAACCTCCATAAGTCCGCGCGCGGTAT 11369 29 96.6 36 .......C..................... TCAGGAGTGGTAATGTCTTCTGTTGCTACCACATCA 11304 29 82.8 37 ..A....C....C........TC...... GTGGTCACAGCCTTCTTATTGCCAGCAGGTGAGCCCC 11238 29 75.9 0 .......C.......CA.....CA...CC | ========== ====== ====== ====== ============================= ====================================== ================== 35 29 98.4 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : TTCAAGATTTGGTGGTGAATATATGTATGTAATTTTAATTTATGATATTTCTGTGGAAAACGGTGGGGCAAAGGTATGGCGCAATGTGTTTAAGATTTGTAAGCGATATTTAACACATGTCCAAAAGTCTGTATTTGAAGGTGAAATAACGCCTGCTCTTTTAGCGAAATTACGGATGGAGCTAGACAAATATATTCGTTCAGATATGGATTCAGTGATTGTCTTTTCCAGCAGGCAACAAAAATGGTTAGAAAAAGAATTTTGGGGACTGGCTGATGAAAAAACGTCGAATTTTTTCTGAATAAATATTTCTGTCGACCTCCAGTAGTGCAAAAAACACTGGAGGTCGACAGAAACGTGGGAAGCATTGGGGGAGAATGGTTTTTGGTGGATTTTCTTGTTTGAGGTGAGAAAATAAAAATAGGTTTTACCTGCTTTTTACAGCGGTCGACAAAAACAAGCCCGTGAGGTAAGATGGGAGTAGGGAAAGAATTTGGCGG # Right flank : CCACCCACCCTTAAAGCCAATAATCTGCTCTAAGGGTTTTTTATTCAAAAAACCACCCCCCAACCCTCCATTTTTTTCGTCCAGCGAAAATCGTTTTCGAAATACTTGTAACCGCTTGCAAGGTTGAAGCTCTATAACTATAATGAACGTAGTAATTCAGTCAGATATAATATTTTTTCAAAATTAGCTAACTGAAGAAATAGAAAACGGAAAAATGGGAATATTTAATTATGTTTTCATTTTAATCTAACAAAAAGGAGAGCTTAAGTATGAAAAAAATCGTATCAATCGGTTGTATTGTGGGACTTTTAATGCTTTTAGTGGGGTGTGGAAGTGAAGAAGCATCGAGTTCAAAAGTAGAGTTTTACACGGATAAAGGTGGAGAAAATGTTGGTATTTTGAATTCTATGTCAGATCAGATTGAAAAAGATGGAGGCGTTGGGTTTAAAACAGTGGGGTACACAGATGTGACTTCATATGAGACAGCGGTGCAACAGTCA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 24355-23225 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTHT010000005.1 Listeria seeligeri strain FSL W9-1222 NODE_5_length_238451_cov_107.566744, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 24354 29 100.0 36 ............................. AAAGGATACACTGGTCAATTTAAACAAGAAGGTATT 24289 29 100.0 35 ............................. ATAGTTCTTCTTCTTTTCCTCTGTGTTCCTGTTCA 24225 29 100.0 36 ............................. AAGTTTAACACAAGACTCATTTTTAATCGTCTTGAC 24160 29 100.0 37 ............................. CGATTTGATTTGATTTTGAGAAGTCGACACGAACATG 24094 29 100.0 35 ............................. AAAGCCGAGTAGGCTTATTTTTATGCAAAAAAATA 24030 29 100.0 36 ............................. TTCGGTGTCATCATGATGTCGAAACGCAAGGCTTTG 23965 29 100.0 37 ............................. ATGCTTTCCCGGCTTCAACTGTTTTCTTTCCAACCCA 23899 29 100.0 34 ............................. TCCCCTGTTTGTAACTTTAAAAATCCGGGATGAG 23836 29 100.0 37 ............................. TAGGCATCACCCCCTAAATGGGATTTAGCCACCATCT 23770 29 100.0 39 ............................. ATAAAAATAAATAATTTTGCTAATGCGCGCTTGGTTTCA 23702 29 100.0 35 ............................. CTGTGTAGCTTCTTAAGAACAGTAGCCATGTGAGA 23638 29 100.0 36 ............................. TGACTTCTAAAAAAGTATGGACAATGGAACGTGCTT 23573 29 100.0 34 ............................. ACTTTTTAGGTTGCTCAACTAAATAATTAATTAA 23510 29 100.0 34 ............................. AGATTAAGTAGTTCCTGTATATGTTCTTTTGAAT 23447 29 100.0 35 ............................. GAGACTGATTGACACTGATTATTTGGTTTTAGACG 23383 29 96.6 36 ..C.......................... ATTGGCTACATGGAAGCAGTCAACTTCAAAACTATT 23318 29 93.1 35 ........................C...A TAATATTTTATTCGCTTGAATAGAGTAGGGTTCTC 23254 29 86.2 0 ........C....C..A...........G | T [23227] ========== ====== ====== ====== ============================= ======================================= ================== 18 29 98.7 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : AAAAGTCACCGTTCCATCTTTTTTCTCTTTTGTCTCTGCTTTGCTCGTCGTTGAATCATTCCCACAGCCCGCAATCAGTAGTAAAGTACAAAACACCACCATCAACTTCCAAACATTTTTCTTCATCCTTTTTCTCCTTTTTTCTATATAGTTTTTAGCAAAATAAAAACCCAGATAAATCAAAAAATAGCCCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAAATAGGTAACATTCCTGAGTGAGGTATTTGTTTATAGGATGATTTTAGCACAGATGGTAAGCGTTTACAAGTTTACGTATTTTCTGTCGATGTGTGGTAGCGTGGAAAGTACTGGAGACCGACAGATTTGCGGGATGCGTTGGGAGAGAATGAGAGTGGGGGGGATTTGGGTTTTGAATAGTAATTTTAGGAAGGTGGAAAGCCGATTTTGAGATAGGTCGACAAAAATAGTCTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : CCTTTCAATCATGCTAGTAAAGCTGCAGAAATAATTTTTTCGAATTATAAATTCATCCAGTAACTAAAACATAGCTAGTAGCACTATCATAAATTTTCCAGTCAAAAAAATTAAAATCAAATTCTTTACTAGTTTTAAGGTATAAATCTTTTTAATAAAAAGTGAAAAATTTCAATAAATTATATAGCAAATGTTAAACAAAACACTAGTATTTTCAGTGTTTTGTTTTCGCTAGCATTCACTCTTTTTTTGTGTTAAATTAAACACAAACAACAGATGGGGGATGACAAAATGAGATTTAAAATAAATTGTGATTTCGACTCCAACATAATACCGAAAGACTACAGAGGTAAAATAGTCAGTTTATTCAAAACGGGAATAGAGAAATCTAGTCCAGAAAGATATAAAGATTTATTTGGTAGTAACAAGCGGAAAAATTACACTTTTTCGATATACCTGCCTAAGCCTAAAAATAATAAAAATGAAATTTATCTTGAAGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 31330-30583 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTHT010000005.1 Listeria seeligeri strain FSL W9-1222 NODE_5_length_238451_cov_107.566744, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 31329 29 100.0 38 ............................. ATTGGTACAGAAAATGTTCAAGGTGTGTCGATATATTT 31262 29 100.0 37 ............................. ACAAGAAGCGATTAAATTATGAGCTATTGAGGCGGAG 31196 29 100.0 35 ............................. TAGATATATCCATATCTATACTGAGCTATAGGGAC 31132 29 100.0 37 ............................. ACAAATGCCGTTTTTGCTAAAAATCAAATTGATAATC 31066 29 100.0 36 ............................. TCAAAATGAATTCAGGAAAAAACATGGTTGAATATT 31001 29 100.0 36 ............................. AATCCCATATCTAGTTGTTGTAAAGCATCTAGACTG 30936 29 100.0 35 ............................. AGTGGTATATTTATCGTAAACGGCTTTGGGTTTTA 30872 29 100.0 36 ............................. TTTTTTATTGGTATTTTGCTAGTTTCGCCGCAAAAG 30807 29 100.0 36 ............................. AAATAATTCGCGCTAATGGATAGGTTTTTTGCAATC 30742 29 100.0 36 ............................. TGACACAGAGGGGGAATTTGAAGGACATGATATTAC 30677 29 100.0 37 ............................. GATGCTGCAGCGTATATAATTTAATTGAGCTAATTTT 30611 29 93.1 0 ..........T.C................ | ========== ====== ====== ====== ============================= ====================================== ================== 12 29 99.4 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : GCGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTAGAAGTTATTGCCTGCGCAACCCACTCGGTTATGGCCGGAAACGCAACCGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCCGACTCCATTGACCTACCAGAAGATAAACAATTTGATAAATTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTGTTTTAAGAAAATCTATAAGCAGAGACTCAAATTGGGTCTCTGTTTTTTTGTACGTTAACTTCTGTCGACCGTTAGTAGTGTAGAAAACAAGGGGGATCGACAGAACATTGGATTCCTTTGTGGGAGAATAGGTTTGGTGGGTTTTTAGTTATGAAATTAAAGTTCGGTGCTTTGATTTTAAGAGGTTTTTTGGAGATCGACAAAAATAGGCGCTTGAGGTAAGATGGGAGTAAGAGGAAAAGTGAACGG # Right flank : GTCTCCCAGTCCACTTACTTCAAGTGACCAGAAGTGTTTTAACTACTTTTAATCATCCAAAAAACACCAAAGCGGAGGAAACACTTATGAAAAAAGCATTTATCCCGCTTCTATTTTTACTATTCCTACTAGCTAGTTGTTCCGCGCCCAATGAAAAATTAACAAAAAACACCAAGATTTTTAAAGAAGGCGTCATTAATGCGGATTATCAGATTCCACAAAACCTAGCAGAGCTTGAATCTAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAAATGGCAAAAATAACAGCACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGAATTTCGAATCAGGTGAGAAAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGAGAGTACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGGTCAAGAGTATATCTTGTTTTTAAGCGGAGGACATGACGGGGATAGAGTAAGTTCTATC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //