Array 1 8073-10926 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNIQ01000307.1 Xanthomonas oryzae pv. oryzae strain FJ21 scaffold306, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 8073 31 100.0 36 ............................... ATATCAGAATAACCCCGGCGTTATAAATGGTGTGAA 8140 31 100.0 36 ............................... TGTTGCTGTGGGAGAGACCGCATGAGCGAGAAAACC 8207 31 100.0 35 ............................... CGCCGACAGATTGCCAACAGTGGCAAACAGCTCGT 8273 31 100.0 33 ............................... CTTACAGACGACCAGTATGACAGCTTTGCCAAG 8337 31 100.0 35 ............................... CAGCTCTTGCCCGAGAGTTCGAACACCAGCTGAAC 8403 31 100.0 37 ............................... ACTGGCGACTCAAGCACTTGCAGGAGAGCATGCGCCC 8471 31 100.0 34 ............................... ATGGGTGCCTGCCTGTGCCAGTATGTATGCATGT 8536 31 100.0 34 ............................... CTTGACCTTCAAACCACGGATCAGGCGGTTGTTC 8601 31 100.0 34 ............................... AAGCCAGCCGCCGACAGTGTAAGGGCAGACCCAC 8666 31 100.0 34 ............................... GTTGAAAACTAGCATGTCACCAAATCCCGAGCGT 8731 31 100.0 34 ............................... ACCCACAGTCAGCAATATTGCCTGCTCAACAGTC 8796 31 100.0 33 ............................... ATGGGTGCCTGCCTGTGCCAGTATGTATGCATG 8860 31 100.0 35 ............................... GGTTGCCAGTGAGGTCTCGCAGATGATCCCTCAAC 8926 31 100.0 34 ............................... CAGCTTAGCGGTAATATCAGTCATTTTATTGGTG 8991 31 100.0 36 ............................... GACCAACAAATTGCCAAGGCTGATATCAGACGCAAC 9058 31 100.0 34 ............................... CCAGCAGGACTTGACCGCATGGTCTTTGCAGCTG 9123 31 100.0 35 ............................... TTGGTCTTAAGCCCAAACGGCACAGCATTGTGACC 9189 31 100.0 35 ............................... AGGCTGTCGGTGACATTGGCCAGGGTGGCTTCCAG 9255 31 100.0 33 ............................... CAAGTGTCCTTACAACGGTGAGGGCTGTGTCTG 9319 31 100.0 34 ............................... TCCTTGCGGTATTTGTAAATGAACTCCTGCACCC 9384 31 100.0 36 ............................... ACGTTGTCCAGCATGTCAAAGACCACCAGGCCGGCA 9451 31 100.0 35 ............................... TCGCTCACGGACACGGAGTCATTAAACGTCATAAA 9517 31 100.0 35 ............................... TACCTGTGGCGCGTGCGTATCACCGACCGCGACGG 9583 31 100.0 34 ............................... ATGACGGCCAACAAGGTGCGTCGCCCGGACGGCG 9648 31 100.0 34 ............................... CGGTCACGACCACGAGCCCTGGGCGTTTTTCGCA 9713 31 100.0 35 ............................... GATGCGCGCCTCTGGAACGAGGTCCTACCCCGCTG 9779 31 100.0 35 ............................... TCTCACGGCCACTGCCGACTCGTATGTCATGGTCC 9845 31 100.0 34 ............................... CATTGGTGCCTGCCTGTGCCAGTATGTATGCATG 9910 31 100.0 35 ............................... AATCGAGATGAGGCGGAGGCCCGGGCACGTGTGGA 9976 31 100.0 35 ............................... AAGCAATGGCGCTCGGCCAGCCTCTACAGATCCGC 10042 31 100.0 34 ............................... GTCGCCGGGTACCAAGCGGCAAACCTCACACCAC 10107 31 100.0 35 ............................... GCCACCCCCGACGGCCATCACACCGTCAAGGGAAA 10173 31 100.0 35 ............................... TTCGGCGTCCCGCCGAGCATGATTGGGCACAGCAG 10239 31 100.0 36 ............................... TTGACAGATGATCAGTATGACAGCTTTGCCAAGAAG 10306 31 100.0 35 ............................... AACTGAAAATTAACTCTATCTAACCAAAAGGAACC 10372 31 100.0 34 ............................... GTGAAATACTCGCTCGCAATCGACTTGATGAGCG 10437 31 100.0 35 ............................... CGCTACGATCCGGCATACGGGACGTAGGGTTGCAC 10503 31 100.0 36 ............................... ATCACGCGGACGAACAAGCCCTCATCGCGCGATCCG 10570 31 100.0 36 ............................... TCCCTCTGTTTGTTAATGTTCTCAACCTCTCTGGAA 10637 31 100.0 33 ............................... GTACAGGTCGGGCTGTTGCGCTCTGTAGTACGC 10701 31 100.0 33 ............................... CAGCCCCGGCGTCGGCGGCCGCGTCGAACTCCT 10765 31 100.0 34 ............................... CTGGGGGATGTTGAGCATAAGACCAGCAAGGCTG 10830 31 100.0 35 ............................... GGGCATGACTAAACTCCTCGTTGGCGTTACGGAAA 10896 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 44 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATAACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGC # Right flank : CTCAGCCTCTAGCCTCTCAGCAAGGGACTTAGGGAACCTCTGAACAACGCACCACAAATGCGAGACACTATTTGTTCGGAATGAGGAGGCATCCATGCAACTGACGTTCGGTGACGCCGAGGGCCTGGGCAAGCGCAAGCAGACCCGGCGCGAGATCTTCCTTGCGGAGATGGAGCGCATCGTGCCGTGGAAGCGACTGCTTGCCCTGATCGAGCCGCACTATCCGGTGTCAGGACGACCGGGTCGGCAGCCGTACGCGCTGGCGACGATGTTGCGGATTCATCTGTTGCAGCAGTGGTATGCGTTGAGCGATCCGGCGATGGAAGAGGCATTGCACGAGATCCCGACCCTGCGGCGTTTTGCCCAGCTCGGCGGCTTGGATAACGTTCCAGACGAGACCACGATTCTCAACTTTCGCCGTTTGCTGGAAACCCACGGCATTGCCGCTCGGATGCTGGAAGCGGTCAACGCCCATTTGTCGCGCAAGGGGCAGAGCCTGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 396-2795 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNIQ01000167.1 Xanthomonas oryzae pv. oryzae strain FJ21 scaffold166, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 396 31 100.0 36 ............................... TTGTAAAGCTCAGACATGGGGGCACCCTCTCCGCCT 463 31 100.0 35 ............................... CGACCTCTTTGAGAGTGTGTCACTGTACATCTGCA 529 31 100.0 36 ............................... GTCGTGCAAGGCCCGCTGATCCAAGCCTGGCAGCGC 596 31 100.0 35 ............................... TTCGGCGTGCCGCCATCAATGATTGGGCACAGCAG 662 31 100.0 33 ............................... TGGCAAACGGTGGTAACTCGTCTGCTATTAGAC 726 31 100.0 34 ............................... ATCTACAAATACCGGAAGGAAAAGAAACGTGTCC 791 31 100.0 34 ............................... GTGTCCCACTGCGCCGACCACTTCGCGCCGCCGC 856 31 100.0 36 ............................... CGCCGCGTTCGCGCCGCAGACCGTAAGCAGTTGGCG 923 31 100.0 35 ............................... TTGGCCTACCAGGCTGCGGCGAAGTGGCCGCTGAG 989 31 100.0 36 ............................... CAGAGCCTACGGGGCTGGGGCAGCATCAATTGCAGC 1056 31 100.0 33 ............................... TGCTGTCAGATCCGCAGTTACTGTATAGACCTG 1120 31 100.0 35 ............................... CGTCAGCATCTGTGACAGTAGCAATGACATCCCAG 1186 31 100.0 34 ............................... CCTCACCCCGCCGGATGCACGTCTGACCGTCCGT 1251 31 100.0 34 ............................... CCCTTGGTGCCTATTGTGCCTAAATCTAGGCACA 1316 31 100.0 36 ............................... CACACCGACGGCGGCGGCGTGCGTACGTTGCGCCTC 1383 31 100.0 35 ............................... GGCACGGGGACATCGGCGGTGCCGTCAGACGCTAG 1449 31 100.0 36 ............................... AACGCGTTGTAAGCCTCGTGCCCGTGCTGCGTGATG 1516 31 100.0 35 ............................... CGGCAATCGACGGCGATCTAGGCCCCGACGATTTA 1582 31 100.0 36 ............................... TTGACGGTGACGGTGTACGCGCCACCGGTGTTATTG 1649 31 100.0 37 ............................... AGCGACGCAATTGCACTACTGCTCGAAGAAGGCTGTA 1717 31 100.0 34 ............................... GCCAAGGGCTGGACGAACCGGCGGATTCTGGCGG 1782 31 100.0 34 ............................... TGGCTCCGTTGGGTGGTTGGTAAAGCCATCGGAG 1847 31 100.0 34 ............................... CAATGGTTAGTGCACCTGGTCCTCGGCAACGCTC 1912 31 100.0 34 ............................... GCGCGGAGTATCGGCGCAGTACACACCGCTCCCG 1977 31 100.0 35 ............................... TGGATGCTGACGTTCGTGACTTGCGCGCCGCTGTC 2043 31 100.0 35 ............................... GGGCGCGGGGCGAGCGGGACGACCTGGATGCTCAT 2109 31 100.0 34 ............................... GTTCTATACGCGGAACGGCGCGGGCACGCTGCTG 2174 31 100.0 34 ............................... GTGGCCCACGTCGAGTCGCAGGCGAAACGACCGC 2239 31 100.0 35 ............................... AAGCTGACTAGCTCGAAGAGCCAAGCGGCGATGAC 2305 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 2371 31 100.0 33 ............................... ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG 2435 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 2502 31 100.0 35 ............................... TTTGCGACGGTGTTCAACGGCGAGCAGATTGACGG 2568 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 2633 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 2700 31 100.0 34 ............................... CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA 2765 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 37 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : CTGCATTTTTCATTGCCGCCAAGCGCTCCACGATTCAAGCCATTGGCAACAAGCGCGCGCGTGCTTGGGCAGAACGTTGGGAACACTTCAAGGCAAGCGTGCGCGCGAAGGTGGAGCACCCATTCCGGGTGATCAAGCGGCAGTTCGGCTACACCAAGGTGCGCTATCGCGGCCTGGCCAAGAACACCGCACAGGTGCAGACGTTATTTGCGCTGTCGAATCTGTGGATGGTGCGCCGGCACTTGCTGCCGGCCAGGGGATAATGCTGCCTGGCGGCAGCCAAAACCGCCAGAACGTTGCAAAAATCGCACCCGACTCAGCATTTTTCCAGTCATTGAAATGCAAGAAGCTGGAATTTTAGAGGTTTGATGGGTTGTTCAGACCTTCCTTAGAGCG # Right flank : ATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCAAGCCACGGGTCTTGTGGGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGTCGATGGTAGGACCGTCGCTCCACCGAGACCAGATCATGGCCATGAATCGTGTGCAGTTCCAAGCCGGGCTGTCGTTGCCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //