Array 1 1072623-1070824 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHMO010000001.1 Saccharothrix ecbatanensis strain DSM 45486 Ga0374009_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================================================================== ================== 1072622 28 79.3 91 ..G.....TA...A.......-..A.... ATCACGCGGACTGTCGCGTCGGCCAGGGCGACACTTTCCCATGCAAGCGGGGATTATCTGATCAAGGGAGTCGACAGTCGATATATCCGAA 1072503 28 86.2 32 ..G.....T........A...-....... TACAGCGTCGGCAGGTTCATCTTGGCGACCCA 1072443 29 89.7 32 ..G..........C..............C GAGGTCGTCCGGACCTGCCTGTCCGTGCCCGC 1072382 29 96.6 32 ............................C AGCCGGGCCTGGAACCACCGCCACGTGCGCCG 1072321 29 89.7 32 ...............T...A........T CCGATCGGTTTGCCGGGCCTGATCACCGCCGA 1072260 29 82.8 32 ....CT.......A..........A...C ATCGTGGACGGCAAACCGGACCGGGTGGTGAG 1072199 29 100.0 32 ............................. CCGTTGAGCACCTAGTCGCCCATCACGTCGGC C [1072190] 1072137 29 96.6 32 .........A................... CCGAACCCGTTCATGCCCCGGCAAGAGTTTGT 1072076 29 93.1 32 .......A....................C CATCAGCGCTGCTTGACCGCCACCGCGGCCGA 1072015 29 100.0 33 ............................. CCGCCCCGGCCGCCTCGGAGAGGCTTTCGGTCG 1071953 29 89.7 32 .................AA.........C TCTGGACCAATGTCGGGGGAACCACGCCGAAC 1071892 29 100.0 32 ............................. AACTCCGGGTCCTGCTTCCCGTCGAGGAAACC 1071831 29 96.6 32 .............C............... TCCAAGTGGTCGGGGCATGGCCGGACAGTACG 1071770 29 93.1 33 ...........A................A CTCGTTGATGTCGTCCACGTCGGGCGCGGTCGT 1071708 29 100.0 32 ............................. TTGCACGCCGAGGACTTCCGGCTCTTGCCGTT 1071647 28 93.1 32 .....-......................C TCGGTGTCGAAGCGAACCTGCATTCGGGAGTC 1071587 29 96.6 33 ............................C TTCGATCCGCGCCCCCGGTGCGGACTGGCGGAC 1071525 29 96.6 32 ............................C TCCAGCAACAAGGCGCCGCCCGGGCCTTTCGC 1071464 29 100.0 32 ............................. ATCGGTGTGTGTGTTACGGGGATCGCTGGCTA 1071403 29 93.1 32 .........A..................A GCATTTCTGAGGGCGGCGGTTTGACTCTGTTC 1071342 29 96.6 32 ............................C CACGCCGGGTCGAAAGCGACCTCGCGCACCGT 1071281 29 93.1 32 ....G.......................C AGCGAAGACCCGCCATCAGGCCCCTTCCGTCT 1071220 29 100.0 32 ............................. GATGACCTGAACGGACCAGTGTTGGATAGTTT 1071159 29 100.0 32 ............................. GCTTCCCGCCTTCCTGGGAGACACCGGACGGG 1071098 29 96.6 32 ............................C AGCTTGCCCTCGGTGATCCCCTGCTCGGCGAG 1071037 29 96.6 32 ............................C GGCGCCAACTTCGCCGTGCTGTCGCTGCGCAA 1070976 29 100.0 32 ............................. TACGGCACCGCGTGGGCTACGCCGTCGTCCAG 1070915 29 96.6 33 ...........................T. GCGACCGATGCCCGACACGAGCCCGGCGTCACT 1070853 29 89.7 0 ..........T.T...............T | C [1070844] ========== ====== ====== ====== ============================= =========================================================================================== ================== 29 29 94.6 34 GTCTTCCCCGCGCGAGCGGGGGTGGTCCG # Left flank : CGGCGGGCCGGAAACCACAACCCCACTCCACCCGCACACCTCGACCCCGACATTAACCGGATTGACCAATAACCGCCGACCCACCCACGACCAGCCACCTACCCAGTCCCACAAATCAGCAGGAGCCGGCCCACCAACATCCAGTGCACCCCGGCTCGGCCAGGCGGCGTACACATCGGTCGCTGACAGGCGCCGCCCACGGTCCGACCGCCACCCCATCCACCCACCGGCAACCTCAGGCCACACAAAAACTGTGATAGAAACCGCCATCCCACACACACGAAGCACCTCCTCCGGATCAGACAGCGAACGCGCCGCTCGCGCCTCGACGCCTGCCCGTTGGAGTAAGACGCCATGTCCGACGGCATCGACCTGCCATCGAGATCCGAAACCGGAACGATCCGGATAAACACACCGCAACGTGTAAGGTGACTGGCCAGAATGCCTTATCCTGCGACAATAGGTAGCTCGTCCTCAGCGACCCAAGGGATCGGGCAGGC # Right flank : GTCCGGGAAGGCACCTGGCGCAAGATCATGTCTTCGTCCCGCGCGAGAAGGGCGATCCCCTCGGTGTAGCCGATGTGCCTCATCAACGCGACTCCGAAGCTCAAACATGTTCGCCGATGCCCATCCGGAGTTGAGTCTCCTGGGCTCGCTCGGCCGCCGCGCTGGCTCCGTAGTGGCGCGGCACGTCTTCGGAGGTCCAGCCGAGCAGCAGCATCAGGTCGCCGGTGTCGCCGCCGGCTCGTTTCCATTCGTGGGCGAAGTTGTGCCGCCAGCGGTGGGCGTGGACGCCGGTCACGCCGGCGGCCAAGCCGCGGCGTTTGAGCATGATTTTGATGCCGTTTGGGGCGAATCGGCGGATGCCGCGTTCGGCCAGCCACAGGTCCGGAAGGTCGGCGGCCTGGTGTTTGGTGCGGGCACGGAGCTAGCGGCTCAGGGCACGGGCGGTTTTCGGGCCGAAGCGCACACGGCGGTCCTTATTGCCCTTGCCGTGGTAGTGGACC # Questionable array : NO Score: 5.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:-0.15, 8:1, 9:0.37, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCGAGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-23] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1081747-1081182 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHMO010000001.1 Saccharothrix ecbatanensis strain DSM 45486 Ga0374009_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================================================================================================================================================================== ================== 1081746 29 100.0 32 ............................. AACGAACTGCCGACCAGGGAACGCAGACCCAC G [1081723] 1081684 29 96.6 32 ...........T................. TGGGGCTGCCCGTGCCCGGACTGCAAACGGGC 1081623 29 96.6 32 ........T.................... TGCTCGCTGCGTTTCGCGGTACCACCGAGTGG 1081562 29 100.0 32 ............................. TTGAGGACGGCATGGTTGTGCCCATCAGGTTG G [1081545] 1081500 29 96.6 32 .......T..................... TCCGCAAGGGCTACGCGGACGGCGTGTGCCAG 1081439 29 100.0 196 ............................. CCTCAAGCCTGGGAGTGCCGCTCTGCTCAAGCGTGTCGCCCCGCGCGAGCGGTGAAGCTGTGGTGTTCGGCGCGGTCGAGCAACGGCCGGTCTGTGGGTGACGGTGACATGCCCGAACCGCTGCGGCCGGGTCCTCTTGCCGCGGCGCAAATGGGGCTGACCCCAGCCTGACATCGATGCGACCGCGTTCGCGGCC 1081214 28 93.1 0 A.......-.................... | G,AAGT [1081184,1081191] ========== ====== ====== ====== ============================= ==================================================================================================================================================================================================== ================== 7 29 97.6 60 GTCTTCCCCGCGCGAGCGGGGGTGGTCCG # Left flank : TGGCCGGTGTCGCCGACCTCCCACACACTGAGCATCGCGCGGTAACCCGAGCGCTCCGGAGCCTGATCGTGTGTGGCTTGTTGAGGTGCGGATCATGGGTGGCGTCCGGCATTTGATCGAGGGCATGTCGTCGTGCATCGCGTCCGCTCATCGGCAGAAGCGGACGTTCCAAGCGCGCGACTTGTGGCATGAGCGGGCCGCAGGCTCGGGCGGAGTCCAGGCCGTTGCGGGTCTTGCGGACGATGTCGCGGCGGCGGTCCTCGGCCAGGGCGAGGTCGAGGATGAGGTTGCGTTCGACGTGTTCGCCAGCGGCGATGCCTTCGAGCACCTTGACGGCGATGCCGCGGGAGAACAGGTCGTTGAGCACGAGCAGTCCTTCGAACAGTTGCGACCTGACGGGCGACAAGCCCAGTTCGACATGCGATTCAACGTGAAGCCGCCCCAGCAACAAACTGATGCCAGAACAGTGATTCGTTGCGTAAAGTGCCTGGTCAAGAAAT # Right flank : CCGGTTGGATGGGATCCGGTCTGTCCGCGTCGTCGTGGGGTGGATCTCGGGTTAGGTGTTGCGTGGTGGGGCGAGGGTGAGTAGGCCGCAGCCGTAGGCCTTGGCGCGTCCGATGCCGGTGGTGAGGGCGTGGGTGAAGGCGGTGTGGTCGGTGATGATGAGGTGACCGTCGAAGCGGACCGGGTCGATGGTGATGGTGCTGTTGTCTTTGCGGCCGGTCATTCTCGGGACGGGTGAGGGGTTGACGTCGGGTTGGCCGTCGCGGGCGGTGGGGATAACGAAGCCGTGTTGTTCGCCTTTGCGGATGAGCCAGGCGATCTGGTCGTCGGGTTTGTGGTGTGCCACGCGGCGGGTCTTGCCTTTGAGTTCGACGGGGCGGGTGTCCTGGGTGGCGTTGGCGAGTAGCCGGAAGGACAGTTTGCGGCCGGGCGCGATGGCGTCGAGCACTGGTTGCAGTGGTCGGACTTCGGGGGTGGCGGTGGTGTAGTCGCGGGCCAGGT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCGAGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1098534-1098012 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHMO010000001.1 Saccharothrix ecbatanensis strain DSM 45486 Ga0374009_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 1098533 29 89.7 32 .C...........A..T............ ACCGAGGTGTGGCGGTGGATCGAGCACCACGA 1098472 29 93.1 34 .............A..............C CGCGCTGAGTCGCACATGGAGGCCACTGCGGCGG 1098409 29 93.1 32 .........T...A............... GGCTACCTGGAGGTCCGCTCTGATGAGCCGCG 1098348 29 100.0 33 ............................. GTCAACACCGGCACCGGCGTGGCCATCCCGGAC C [1098331] 1098285 29 93.1 32 ..T.....G.................... GACGCCAACGAGGCGTTCGACCTCATCACGCG 1098224 29 93.1 32 ............G...............C GCCTGGTGGCCCGAGTTCGGCGCACCGGATCT 1098163 29 100.0 32 ............................. TCGCGGTTGCACCCGGTGGAACCGCAGCCCCT 1098102 29 93.1 32 .A..........................C ACGTGGGTGAAAGACCTCACCCTCAAGGCAAC 1098041 29 89.7 0 .......A.................CG.. | C [1098016] ========== ====== ====== ====== ============================= ================================== ================== 9 29 93.9 32 GTCTTCCCCGCGCGAGCGGGGGTGGTCCG # Left flank : CGCCACACTCGCTCCGGGCGACAGCCCGACAGGCCGGGGAAGGACCACCACAGGTTCGTCGCACACACGTTCGAATCCACGTCAAGCGGAATCGTCCAACCACGCCGTCCACAAGGCATCAGGTCAGGGACGTCCGAGGAACTCGACGGGCGCTCGGAACCGGCGCCAAGACCGAAGCCGACCGACACGACGCGGCCCGCTAAGTACGTCAGCCGGTTGACAACGAACCAACGCTCGTTCACCACCCGAAAAGGCCTCCGCCTGCCACCGTCGGCCAAGCGCTGTCGCGATACGGCAACCGCACCAGCGCCCACCGCAACTTGACCGAGCCCTCACCATGATCGTTGACAGCGACGACTCCCACTCGGCTGACCGTCCACGCCTCACCGACCCGACGGGCCTAAGCTCCGTTCGAGAGGCGACTCAACATGAAGCGCCCGCCCAGAACCAAACCGATGCTAAAACGGTGATCCACCGCCTAAAGTAGCTGGTCAAGAAGT # Right flank : TTCCGCCGCCGCGCTGGAGAGGCGGGCCCTGGTGCTGTAGTACAGCCGGATGATGGCCTCGTCGCGGAGTTGGACGAAATCCTTGCCCTTGCAGGTGTCCGCCTCGCTTCCTGTGGGGTGCCAGAACTCTGCACCGAGGCGCTGAGCTGAGGCGATCGCGCACCACGTGCTGCAGGAGCATGATCGTGAGGCGTGGCGCTACAACTGCTTACCTGATCTTCGTCCGGGTTGTTGGCTGGTTGGTTCTGCTCGGTCGGTCATCGGCGGCCAAGAACGTGGAGTTGCTGGTACTGCGGCACGAGGTCGCCGTACTGCGCCGGATCAACCCTCGCCCGCGACTGGATTGGGCCGCTGGGCCGCATCCCGAACGAGTACAATATGCCGCTTGACCAGCAACTATGACCTTTCGACCGCACGAAGTGGTCTTGATCCCGCGTTTATTAACGATCAGCACGGGATGAAGGCGGCCATGCTGTTCCAACCGGGTGCCAGGTCGTGAC # Questionable array : NO Score: 5.37 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCGAGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 1104517-1103940 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHMO010000001.1 Saccharothrix ecbatanensis strain DSM 45486 Ga0374009_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1104516 29 100.0 32 ............................. ACTGGCATCGCGCGCGGGGATCGTCCCTTCCC 1104455 29 100.0 32 ............................. TCGGGAGCCTGGTTTTACGGCGGCCACCCGAA 1104394 29 100.0 32 ............................. GAATCGCGCATACCGCACCCGTGTGGGGACGT 1104333 29 93.1 32 ................G...........G GTCGTGTGGCTGGTCGCGGGCGCGTTCCTCGT 1104272 29 96.6 32 ............................A TATTGGCATCGCGGGCGACCAGGGAAACGAAC 1104211 29 100.0 32 ............................. GGCCGCCCGGTGGTCTCCGTGACCGTGACCGC 1104150 29 96.6 32 ............................G TGATCGGATTCCGGTCAGCCGATCGCCGGGGT 1104089 29 96.6 32 ............................G CGGTACAGCTCGTCCGCGTCCTGGTCGCCCTC 1104028 29 100.0 32 ............................. GGCTTCGATCGGCATCCTGTCTGTAAGTGCAG 1103967 28 93.1 0 .....................-......G | ========== ====== ====== ====== ============================= ================================ ================== 10 29 97.6 32 GTCTTCCCCGCGCGAGCGGGGGTGGTCCC # Left flank : TGGAGTTGTGGAGGGCCGCCCTCCACGAACTGCTCGAGACAGGCAAACGTCCGACCTGCGTGCAGTGGCAAGAAACCGACGTGTTCTGAGCGGTGTCACACTGCCTTGACCAGACACGCGGACGGGTGAGGTGACAGCCACTGCAACCTGGTTCAAGACCTCGGCGACCGGGCGAAAACCCCTTGTTTCCGGATCAGCGACCGGGCAGGCCGGTTCACCACCTCGTTCGACACGGTCCTGACCGAGGCCGTTGTTGACGTCGTGAAGACTTCGCCAGGTGGAAACGGCTTCGCCGAGCCGTTCGTCGGCATCGTCAACCACGACCGCGCCCTCGTCTTGATCCCTGGCATCGATTCCGATCCGGAAGCGCGTTCATGTCCTCGCTGCGGAGATCCGATGGGCCGGAGGCCGGTTCGAGATGCGATTTATCGTAGAGCGGTCCCCACACCAAACCGATGCTGAAACGGCGACTCGTCGCGTAACGTAGCTGGTCAGGAAGT # Right flank : CCCTTCGAGTCCCTGGCCACGATCTACGCCGATCAGGTCATCCATTCTTCACATGCAAGAGCGCGGGTTGCGCCTCGCACCGTTGTTGAACGGTGTGCCGATCCGTCTTCGCCTCGATGGCCTGTCATGTGGTTTGTGTGGGTGTGGCGTTGGCGAAGGCGGTCCAGAGGAGGTTGAGCGGGTGGTCGGGGGCGTAGCGGTCGCGTTCGCCTGGGCGGGCGAAGATGCCGGTGACGATCTGCAGGTCGGGGTTGTAGTCGTGGGCGAGGGGGATGTTGCGGAGGTTGGTGCCGGGCAGTGTGCCGGTGACGGCGGCGTGGGCGACGCGTTCGGTGGTGAGCATCGCGCCGTGGAGGAGTTCGTTGTCGAGCAGGGTGAGGCCGTAGTTGAGGGAGTCGATGTCGGCGACGACGTTGAGCACGCCGCGGTAGTCGGGCCCGTACCAGCGGCCGAGGAACTGGGCGAGCAGCCCGGCGGACGGGACCAGCAGTGGCAGGGCG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCGAGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 1123146-1122148 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHMO010000001.1 Saccharothrix ecbatanensis strain DSM 45486 Ga0374009_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================================================================== ================== 1123145 29 100.0 32 ............................. ACGTGAACCATCGGGCAGGTCTGCCAGCCCAG 1123084 29 100.0 32 ............................. GCTCGGGAAGCGTTCACACGGCTCGCCGTGCC 1123023 29 96.6 32 ............................C TTGATCTGCATCAAGTCCCAGCAGTACCGGCG 1122962 29 96.6 32 ............................C TGCTCACCGACGATGGTCCGGTGCCGGTGTGC 1122901 29 96.6 32 ............................A GCCATCGGGTCGGTCGGCATCATCTACGACCA 1122840 29 96.6 32 ............................C GACGGTGGGCGGGTCACTGCGTCTGGCCAGGG 1122779 29 100.0 32 ............................. CGCCGAGTTCACCGCCGCACAGGACAAGCTCA 1122718 29 96.6 32 ............................C TGGTTCTTCGCCGCCCTGGCGGTCGCCCAGAT 1122657 29 100.0 32 ............................. GCCGCGCTGCACACCGTGCTGTCCCGGCGCGA 1122596 29 100.0 32 ............................. GGGCTCGACATGGATGACGCGGGAACGGCGTT 1122535 29 100.0 32 ............................. GGCGCGCCGGACCCGTTCCGCACCCGCCTGAC 1122474 29 100.0 32 ............................. TAACGCCTAACGTGACGGCCGGTTAGCAGCAC 1122413 29 96.6 32 .......T..................... TGGTCGGGCAGTGCGGTGAGTAGGTCGAGTTC 1122352 29 96.6 86 ............................C GCTGGCTTCCGGCCCGATGAGATCGAACGTCTGTCTTCCCCACGCGAGCGTCCCGGAACCCGAACCGTCAACCTCACCTCGGCGGA 1122237 29 96.6 32 ....................A........ ACGAGATCCGCGCCGGAGTGCGGCCCGAGTAC 1122176 29 93.1 0 .........................G..A | ========== ====== ====== ====== ============================= ====================================================================================== ================== 16 29 97.9 36 GTCTTCCCCGCGCGAGCGGGGGTGGTCCG # Left flank : GCGATCTCCCTGGGGTAATCGAGGTACTCAGACGACGCCTTCACCAAGTCACACGACTGGCCGGCTTTCACTCCGACTACATACTCGCAGCAACGATGGAAGTGACCCGCTCCACCGTGGGACGGGTCCTCTCGGGAGACGCTCGACCGGCTTCCGCGTTCATCGCGGGCGTCCTCGTCGCACTCCGTCCGATGGCTTTCGAAGACTGTTTCGAGGTAGTCACCACACCCGACAATCCTCTCGAATGACCTCAGGCCGCCCGGCCCACGACCCCGCCACGGTCTGATCAACTCACAACGCTTGACTACCCGCCGCCGTGTCGCTACCGGCCAACGACACCACCTCCCAACGCGGGCCCGCCATGATCCCGTGACGACGACCGCCATAGACGCCTGACGGGCGACAGGGCCAGTTCGAGATGCGATTCAACGTGAAGACGTCCCAGCATCAAACCGATGCTAAAACGGTGATTCGTCGCGTAAAGTAGCTGGTCAAGAAGT # Right flank : CTTCCGTGATGCCATCGATGAAACCGACAGCCAGCGGTAGGAGCCCCACGCGAGCCGCTCGCCCCCGGCCCACGCGGCGAGTCCAGCCACCTCGGCGGGGCCCTCGTCTACGCCCATGCGTCAGCCTCGGAAGCGCCGATCGTAGCGGTAGGTTGCAGCGCTCGATCAGTGCTCGCGATCAGGCGCTGGCGAGTTGACTGCTGAAGTCGAACTCCCCCGCAGCAGCTCCCGCTCGGAAAGCTGACCACTCACCGTCGTCAAAGCGAAGCTCGACCTCGGTGTTGAGCGACTTGACGAGGGTGTCGGTGCCGATCCTGGTGATGGCGGCAACCCCGTTGGCGGACATGACATCGTCGCGAGCTTCGCGCACGAACGCCACCCACTCTGGATGGGAGAAGGCGATGGTGCCGTGGTCGGGGTTCTTGCTGTGCCGGATGATCGCGCCGTCCGCCGTCGGGGCGACCTCGACGCAGTTTTCGCCGTTGCTGCTGCGAGTGGAG # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.26, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCGAGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 1148834-1147770 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHMO010000001.1 Saccharothrix ecbatanensis strain DSM 45486 Ga0374009_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1148833 29 100.0 32 ............................. CGATGGCCGAAGGGGACGTGGATGAGGCTGAT 1148772 29 100.0 32 ............................. CTGTGGCGCACCGAGACCACGGGGGCCCTGTC 1148711 29 100.0 32 ............................. TCCTGGCACTCGTCTCCCGTGACGCCGACGGC 1148650 29 100.0 32 ............................. GTCATCGAGGAGATCCGGGAAAAGCGGATCCG 1148589 29 100.0 32 ............................. TTCACGTGCACCGTCCCGTCCGTCTGCTTGTA 1148528 28 96.6 32 .....................-....... GTGAAGCCCACGAACAGGTCCGGCGTTTTGCC 1148468 29 96.6 32 ............................T TCGTCGAACGGGTTGCGGCTCATCGGGTCTCC 1148407 29 96.6 32 ............................C GTCTTCAGCGCGTCAGCGAACCCCACACGGGT 1148346 29 96.6 31 .............A............... CAGGCGTTGGCGGACGTCGGACGTCGGCGAT 1148286 29 96.6 32 ............................C CTGCCCGCGACGTAGGTGACGTCGACGTTCTC 1148225 29 100.0 32 ............................. TCGGCGAACAAGGACGAGTGGGTCGCCTACGC 1148164 29 96.6 32 ............................C TCGGCGTTCATCAGGCCGCCGCCTCTCCGGTC 1148103 29 100.0 32 ............................. CGGGCGTCCAAGCCGCGAGCCAGCCCTCTTCC 1148042 29 96.6 32 ..........A.................. TAGTGGGCCAAGGTCCCGAGCGTCAGCGCGTC 1147981 29 100.0 32 ............................. GTCGTCCGCATCCACCGCCAGGACCACGAACC 1147920 28 96.6 32 .....-....................... GCGTGGCGCTCGGCCGCGTGGTGGATGGGACA 1147860 29 96.6 33 ............................C CGCAAAGACACTGTCCGAGGCGCAGAAGGCCGA 1147798 29 79.3 0 ..TC.........A....AA........C | ========== ====== ====== ====== ============================= ================================= ================== 18 29 97.1 32 GTCTTCCCCGCGCGAGCGGGGGTGGTCCG # Left flank : CGGCCAACGCGGACTGCCCTACGTCTGGGGCGGCGACGGTCCCCACGAAGGCGGCTTCGACTGCTCCGGCCTCACCAAAGCCGCCTACGCCGCCGCCAACATCCCCCTACCCCGCACCGCCCAAGCCCAATACGACACCGGCCCCCACGTGCCACCCGGCCAACCCCTTCAACCAGGCGACCTCGTCTTCTACGGCACCCCCGACAACATCCACCACGTCGGCCTCTACCTCGGCAACGGCCTCATGATCAACGCACCCGACTTCGGCCAACCGGTCCAGACCGACAACCACCGGTACCAGGGCGACGACTACGCCGGAGCAACCCGCCCGACAACTCAGGCGTACGCCACCAGCCAGGATTAGCAGCGTCGCCTGTACACGAGCCCTCACGAGCATCCGAACGATGTCGGACTGAGAGACAACTGGTCGTAATCGCCTGTCCACCGGCAAACCGATGCTAAAACGGCTACTCCTCCCCTAAAGTAGCTGGTCAAGAAGT # Right flank : GGCGACGCCATCGCGGCACCTCCAGCAGGCCGCGTCTTCACCGCGCAAGCCGCCCACCTACGAGATTCGTTCGCTGTCCAATCCCACTACATCGTTGACCGCGCGCAGGAGGCAAGCGTCACGCGCGATTTGAAGCGTATCCGCCCGTTCGGCGACTGCCCGCGCGGCCCAGTCGTCGGTGAGGCTATTTCCCACGCCGAGAACGACCTTGTGGCCGAGCTCCCAGAGGACGGTGTTGACGGCGAGGCAGGCGATCGCGAGTTCGTCGGTGTCCACGGCCCACCAGGTGACGGTCGTGGGGTCACGGCCAGCGGCGCGCATGGTGTTCGCTGTCGCGCGCAGAAGCCCTCCGGTGCCGGCGGCGGGGTCAAGGAACGTGCTCCCATCCTCAGGTGGGCCTTGTAGCGCGGCCATCGCCATGCTGATGTCGGCTGGAGTGTAGAACTCGCCGTGAGTGGTCTTGGCCGTGCGCGAGCGCAACGCTGCCAGCAGTAGGCCTA # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCGAGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 7681203-7680928 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHMO010000001.1 Saccharothrix ecbatanensis strain DSM 45486 Ga0374009_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 7681202 29 100.0 33 ............................. CTGCGGTGGCGGGACCTTCAGGCGTGGTGGCGG 7681140 29 96.6 32 ............................C GCCGTGGCGATCCTGGCCGAGCAGCGGATCGG 7681079 29 100.0 32 ............................. GACCCCACGGTGGAAGCCAAAGGGCTGGGCGG 7681018 28 93.1 32 ..............G......-....... GAAGTCCTCATGCCGTTGGCGGACCTCAACCG 7680958 29 79.3 0 ..T........T....T.....C..G..T | CG [7680933] ========== ====== ====== ====== ============================= ================================= ================== 5 29 93.8 32 GTCTTCCCCGCGCAAGCGGGGGTGTTCCG # Left flank : GGTAGCCGCCAGGTGGGTGCCTTGTTGCCGACACGCGGCGAGAGGTCCGCTTGGCGTGGCTTAGCGAGGAAGACGGCTGTAGCCGAAGGGGCGACTGCCTGTCTCCCATAGCCCGTAACACCCGTAACCGCCGTAACCGCGCTGGTCAGGCGGTTACGGGTGCCTTGTGGTGGCCATAACCGGGTCGGTCAAGCCGTAACCGGTGACGGGTGGCGCGACCGGGCCGTAACCGTCTGACCTGCATGGTTACGGCGGTTACGGGTGTTACGCCTTCTGAGGAACACACACTGGCCGCAACAGCGGCCACCCCCTGACGCGTGTGGCTGGGGCGAGCCAGGTCGGCGGGATGGACACGAAGCACTCTTGTCAATCACGGCTGACTTCGTCGCGCCTGGACCGCCGGGTGTCCGTTGCGCTCTGTCGAAGGTCGTCGACTTGCGAGACCGAAGTGAACCGAATGTAAACGGCCATCTGCGGGGTAAAGTCGCAGCGTATGAAGT # Right flank : GTCTCCCATAGCCCGTAACACCCGTAACCGCCGTAACCGCGCTGATCAGACGGTTACGGGTGCCTTGTGGTGGCCACACCCGGGTCGGTCAAGCCGTAACCGGTGACCGGCGGCGCGACCGGGCCGTAACCGTCTGACCTGCATGGTTACGGCGGTTACGGGTGTTACGCCTTCTGAGGAACACACACTGGCCGCAACAGCGGCCACCCCCCGGCTACAGCCGCCCTTGCGCCCGGAGGCTGTCCACAGTGGATGGTTGTGTCGGGCAGAGCGGTTCACCGTGGTTGCATTCGTGGTGGCGTTCGCTGACGATCGCGCGTGTTCGTGGACAACCGCCGCACCTCGCTGGCCTGCACAAACAGTTGTCACGTGCGGTGCCGGTCGGTGGTTCGCAGACCTCGAAAGCGTGTGAGGTGAAAGCCTCCGTGGGTTCAAATCCCACCGCCACCGCAGATGAGAGCCCCGCTCACCACCAGGTGAGCGGGGCTCTTTCGCGTCGG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCAAGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGAGCGGGGGTGTTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //