Array 1 2979150-2978511 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP007465.1 Salmonella enterica subsp. enterica serovar Enteritidis str. SA19940857 chromosome		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                  	Insertion/Deletion
==========	======	======	======	=============================	=================================	==================
   2979149	    29	  96.6	    32	...........................T.	AGGATTTCGCCGCGCTGTTGGCCTCCAGATTC 	
   2979088	    29	  96.6	    32	...........................T.	CCGTGCCTGTCCAGGACAAATTGCCGATTATT 	
   2979027	    29	  96.6	    32	...........................T.	CTGCCGGTCTGTGCTGTTGTCGTCAATAATCA 	
   2978966	    29	 100.0	    32	.............................	GCATGTGACAGTCTGATTTTTATAGCGCATGA 	
   2978905	    29	  96.6	    32	............................C	AATTTAGGGGCCGGAACTCCGGGAAAGGCAGC 	
   2978844	    29	 100.0	    33	.............................	CAAACACCAAGCTCTTCCGCCGCGCGTTCCTGA	
   2978782	    29	 100.0	    32	.............................	TTGCTCTCATTAAAGGGGTTTCCATGTTTGAT 	
   2978721	    29	 100.0	    32	.............................	CGGTCGCAGCCTGGCCTGTTGCCGTAGAATCG 	
   2978660	    29	  96.6	    32	.........T...................	AGTTACTGATGCAGACTGCGGATCTTAATCGG 	
   2978599	    29	 100.0	    32	.............................	TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 	
   2978538	    28	  82.8	     0	...............A.AA.....G-...	|                                	
==========	======	======	======	=============================	=================================	==================
        11	    29	  96.9	    32	GTGTTCCCCGCGCCAGCGGGGATAAACCG	                                 	       

# Left flank :   GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAAGCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT
# Right flank :  TTGCATAATCATAATCTGTGTACCAGTAATGGCTGGTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGGAGGCTTTTCTACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTAGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG

# Questionable array : NO	 Score: 5.90
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   GTGTTCCCCGCGCCAGCGGGGATAAACTG

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [4,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-12.00,-13.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [6-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.65   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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