Array 1 550945-552500 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIBB01000018.1 Escherichia coli strain 7-1BK entry18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 550945 29 100.0 32 ............................. CCAAAGCAAAAGAAGCTGTCGATAATATGCGC 551006 29 100.0 32 ............................. CCTACAGTTGCAATACGCTCACCAGGGCGGCG 551067 29 100.0 32 ............................. AATATACAACGTGCCGTATATTCCGTTCTCTG 551128 29 100.0 32 ............................. TTCAAATTGATACTGTAGCGAGCGTGCGGTTT 551189 29 100.0 32 ............................. CCAGCGTGGTTCGCTCATGGCCTGTCTCCATA 551250 29 100.0 32 ............................. GCGTCTATCAATTGACGCGCGGACGCTACGCC 551311 29 100.0 33 ............................. GTCTATTTGTCGTTAATCGGTACTGATACGGCA 551373 29 100.0 32 ............................. TCTCTCCCGCCATTGGTGCACTGGTTGCATCA 551434 29 100.0 32 ............................. GAATCCCAGAAAATGCAGCGCCCCGGCGCGCT 551495 29 100.0 32 ............................. CAGGAGACGGCCAGCCGGAACGGCGGCGGCGT 551556 29 100.0 32 ............................. AATTTGCATCACGTAGGGGCGGGGCTCAGTGA 551617 29 100.0 32 ............................. ACGGCACGCGTTACGCACCCGGACAGCCAATC 551678 29 100.0 32 ............................. GAACCGCATCAGCGGAAACCGACAACGGGAAG 551739 29 100.0 32 ............................. AATTCAGCAAAATTCGTGACTGACTCGATACA 551800 29 100.0 32 ............................. GCAATGGCATGGGCGAAGCAGAACGCAAAAGA 551861 29 100.0 32 ............................. CTGACACACTCAAGAAAAATCCCCTGCACATC 551922 29 100.0 32 ............................. GCCAGCGTCCTGAAAACACCCTCAGCGTGCAT 551983 29 100.0 32 ............................. TCGTGAGCAATTTTCGCTGGATCAACAGGGAA 552044 29 100.0 33 ............................. GCAGCCACATCCTGTTTAACTCCATGTATTCGC 552106 29 100.0 32 ............................. TCAGTTTTCTGAAAAAATTATTCTCTTATGCT 552167 29 100.0 32 ............................. CTCTTCAATCGCTTAAGGATCAGAGAATAGTT 552228 29 100.0 32 ............................. GAACTTGATCTGATTTGTGAATTTATTCGATC 552289 29 100.0 32 ............................. CCGGACGAGAAATTCACGTTCCTGCATTTCAT 552350 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 552411 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 552472 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.9 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAGCTCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 25804-28394 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIBB01000037.1 Escherichia coli strain 7-1BK entry37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 25804 29 100.0 32 ............................. CCGGTTCGCGAGGGGATCAATCTTCGCGCAGA 25865 29 100.0 32 ............................. CCCGGACGGCGAAACAGATAACCCCAATCAAC 25926 29 100.0 32 ............................. GGCGTTCATGGGTTAACACTGACCCGGCGGCG 25987 29 100.0 32 ............................. TCGCTATGGCCGGTCGTGTCGCTGATAGCCTC 26048 29 96.6 32 ............................A TTCTCATAAAGACGGGGAACCAGCATAACGCC 26109 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 26170 29 100.0 32 ............................. CATCCGTTCAAATTCCATCAGATAGCAAACCA 26231 29 100.0 32 ............................. TATTGTTGACTGCTACGAATACGCAGACGAGC 26292 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 26353 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGTGA 26414 29 100.0 32 ............................. TCGCACTCAATTTCGTCAGTGAACGGGAACCC 26475 29 100.0 32 ............................. ACGCCGAAAACGGTTGGTGCGTATAGCGATAT 26536 29 100.0 32 ............................. CTGTTTCTGGTTTTACCTCCGGCAGCATTTCA 26597 29 100.0 32 ............................. AGAGAGTGGTTTGAAGCCGCTCCCAGGGACGA 26658 29 100.0 32 ............................. CGGAACAACAGGTGCAACTCAGGGCACAGGAA 26719 29 100.0 32 ............................. GGTTATTTATAATCCATTGTTTCCATTACCAG 26780 29 100.0 32 ............................. CTGGTCGCGGCAGGGCGTTCAATTTTAGGGGA 26841 29 100.0 32 ............................. TAATCATTTGGGGCCCCATTAATTAAAAGGAT 26902 29 100.0 32 ............................. GCGCTCACATTTAGCGCCAGAGCCAGGCGGCG 26963 29 100.0 32 ............................. AATTCGGAATCACATTAAAAGGGAACCCGATA 27024 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 27085 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 27146 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 27207 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 27268 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 27329 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 27390 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 27451 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 27512 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 27573 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 27634 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 27695 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 27756 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 27817 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 27878 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 27939 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 28000 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 28061 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 28122 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 28183 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 28244 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 28305 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 28366 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 43 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //