Array 1 61-959 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV793114.1 Lactobacillus sp. HMSC08B12 Scaffold1331, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================================================================ ================== 61 33 100.0 34 ................................. AGATTTACTACATTGAGGAACAAATAGAATTATA 128 33 100.0 36 ................................. ATAGTAGTAAACAAAAGCATCCTGTCCATATCTATA 197 33 100.0 34 ................................. ATATACTACACGGAAACAAACTCTTTGTATGATA 264 33 81.8 8 ...........................NNNNNN NNNNNNNN Deletion [305] 305 33 81.8 32 NNNNNN........................... AATCACGGGGAAACTACCAAGACTGAAGAGAA 370 33 100.0 34 ................................. GATCTGTGACATAGTCAAGGTGGTGGTCAGTTTG 437 33 97.0 35 ....T............................ GTTAGCACCGACAAAATCTGCAGCACTAACGCCAT 505 33 81.8 76 ...........................NNNNNN NNNNNNNNNNNNNNCCCGCATGGGATGCGTGGATTGAAATATCGTCTCTCGCTGGCATGGTTACCGCCGTGATCTT 614 33 100.0 34 ................................. ATTGCCGACCGCTGCCACGTAAACTGCGTCTTGA 681 33 90.9 33 ............................A.G.G GCTGAAGGGAAAGTAGCAGCAGAAAGAAGAAGC 747 33 87.9 80 .............................NNNN NNNNNNNNNNNNNNNNCCCGCATGGGATGCGTGGATTGAAATATCGACGGTTAAGGGCCGCTCTTGGGCTTGCTGTGGTG 860 33 100.0 34 ................................. ATTTGCTGGTACAAAAGTAACAGAGTTACAACAA 927 33 81.8 0 ..........A...AA....T.....CC..... | ========== ====== ====== ====== ================================= ================================================================================ ================== 13 33 92.5 39 GTCGCATCCCGCATGGGATGCGTGGATTGAAAT # Left flank : TCCCGCATGGGATGCGTGGATTGAAATAGATCAAAAGGCAAACCTTTTTAAAACTTTTTTG # Right flank : TATCGCTTAGATATGTGGATGCTTGATAGTCAAATTCCACTAAAAGCACTCCCTCGCGGGGTGCTTTTTAATATTTTGCTAAATCAAACGCTTCACCAAGCAAGCAGGAAAAGATTATAGTAAAATATACTGGTTATAAAAAAGCTGAGTCAAGCTCAGCATCCCCAAAACAAAACTTAGTTGAGGAGAACAAACACATGCAAGATATTTATATTGTTGCGGCCAAGCGAACTCCATTTGGCCGTTACCACAAGCAATTGGCTGACTTTTCCGCTATCGACCTGGGCCAAATCGCCCTGCGTGGCGCGTTAAAAGAAGCCGGCCTTGACGCCGAAGCCCTGGATGCTCTCTTCATGGGCAATGTCCTGTCTGCCGGCTTAGGCCAAAACATGGCCCGGCAAATTGCTTTAAACGCCGGGATGCGGCGGGACTCAGTCGCCGTGTCCATCAACGAAGTCTGCGGCTCCAGCCTCAAGGCTGCCCGCCTGGCTGAAGCCCAA # Questionable array : NO Score: 8.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.62, 5:0, 6:0.25, 7:-0.72, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCGCATGGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCCCGCATGGGATGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.40,-9.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [6-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 6513-8880 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV793105.1 Lactobacillus sp. HMSC08B12 Scaffold1199, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================================================================ ================== 6513 33 100.0 35 ................................. ATTAAACTCTTTAACCAAAGCTTCCGCCGTGCTAT 6581 33 100.0 36 ................................. ATTTTCTACCTTTATATAGCCCGAAAACATGAAAAC 6650 24 66.7 0 ......................CA--------- - T [6670] Deletion [6674] 6669 33 81.8 8 ...........................NNNNNN NNNNNNNN Deletion [6710] 6711 33 84.8 35 NNNNN............................ TTGACTGTCTTAAGTGTACAGCTTTTTGGCTTAAG 6779 33 100.0 33 ................................. ATACTTTTGGCAGTGACCGAGTTTTTGCACGGT 6845 33 100.0 38 ................................. GTTGTAGAGTTGACCATACAAGTAAGTTTGATAGTTAA 6916 33 100.0 36 ................................. GTTAAAAAGCTCCCATGGATACAGACCCGTTTCGAT 6985 33 81.8 75 ...........................NNNNNN NNNNNNNNNNNNNNCCCGCATGGGATGCGTGGATTGAAATAGTCAACTCAACCCCTACAAGGGAAGCCCCATCAA 7093 33 100.0 34 ................................. ATTTATATAGCCCAAAAGCGTGTAAAACGGTCAA 7160 33 100.0 37 ................................. AGACCTGTTTCACCCGCTGGAACAAACAATCCTATCT 7230 33 100.0 33 ................................. ATTCACGAGATCCTCGAGCCAAGCTTGGCAGTC 7296 33 100.0 35 ................................. ATAAGGAGTTTAATCAAATCATCAAGGATCAGACA 7364 33 100.0 34 ................................. AACACAATGTAGACACCTAACTGGCGTTACAACA 7431 33 72.7 5 ........................NNNNNNNNN NNNNN Deletion [7469] 7469 33 81.8 34 NNNNNN........................... TGGATTGGGAAGGAAACACTTACAACTGCGTGAC 7536 33 100.0 33 ................................. AATGTAATTGCAATGTTCGCGTGGCCTAGTCTT 7602 33 100.0 72 ................................. AATACAAGAATCAATAATAAATCCTGTGCATAAAGTCGCATCCCGCATGGGATGCGTGGNNNNNNNNNNNNN 7707 33 78.8 36 NNNNNNN.......................... TCTCGATGGACCCCGACCATTCATCTATAGCTCAAG 7776 33 100.0 35 ................................. ATCGCAAATCCAACTTGGAACAGTGATAACGTTTA 7844 33 100.0 33 ................................. GAAAAACTACTTAGTTGATGGCCAAACTACTTA 7910 33 100.0 33 ................................. ATTATGGAGCAGGCAGCAGAGCTCATGGAAGTC 7976 33 100.0 34 ................................. GAATGATTAGTGAAATTGCAGACAAACTTGCCTC 8043 33 100.0 34 ................................. ATGGACTCTAAAGAAAATAAATGGAGCGTCGTAG 8110 33 78.8 7 ..........................NNNNNNN NNNNNNN Deletion [8150] 8150 33 81.8 34 NNNNNN........................... TATCAGTCCGCTAATTGACGTCCCATCAGTATAA 8217 33 100.0 37 ................................. AATTGGCTTAGGACTTGATCCTAGAAGCGCTTACACT 8287 33 100.0 33 ................................. GAAAAACTACTTAGTTGATGGCCAAACTACTTA 8353 33 100.0 37 ................................. ATATAGAGCGCAGTCGCTGAGACTTCGCCGGGTCCAA 8423 33 81.8 9 ...........................NNNNNN NNNNNNNNN Deletion [8465] 8465 33 84.8 34 NNNNN............................ GTAAAAAAATCTTTCCAATTTATTCTGACCACCC 8532 33 100.0 35 ................................. ATACTACGACCTGGAATGTGATTTTTACGTGAAAG 8600 33 100.0 36 ................................. ATTTTTTCTTTGCCAAATCAGAAACTATTTTTTTGA 8669 33 78.8 76 ..........................NNNNNNN NNNNNNNNNNNNNCCCGCATGGGATGCGTGGATTGAAATCCTTGATCGTCATGACCTTATACGTCTTCCAGCTTGA 8778 33 100.0 37 ................................. ATCGTCGGCAGCATCCATAATAGTTTCATCATAGTAG 8848 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ============================================================================ ================== 36 33 93.2 34 GTCGCATCCCGCATGGGATGCGTGGATTGAAAT # Left flank : ATGCTTGAGACGTCGCATCCCGCATGGGATGCGTGGATTGAAATATAGACAGCTAACAAAGTAACGTCCCGATTATCAGTGTCGCATCCCGCATGGGATGCGTGGATTGAAATAATTGTTGGCCGTGCTACACTTTGGCCGACCGTACAAGTCGCATCCCGCATGGGATGCGTGGATNNNNNNNNNNNNNNNNNNNNCCCGCATGGGATGCGTGGATTGAAATCAAGGCTTTGATGTCAATGGTACTCTTTGCTTGAGTCGCATCCCGCATGGGATGCGTGGATTGAAATAAAGAAATATTATCTTAGCAAGTGACTTTGACATTACGTCGCATCCCGCATGGGATGCGTGGATTGAAATATTTTTGACATGAGATATGCAATTGGACACAGCCAAAGTCGCATCCCGCATGGGATGCGNNNNNNNNNNNNNNNNNNNNTCCCGCATGGGATGCGTGGATTGAAATAGCTCATCGATAACCTGCCCATAATACAGAATTT # Right flank : GACTGAGTACTGTCCAGCAGGCAAGCCAGCCAAAGTCGCATCCCGCATGGGATGCG # Questionable array : NO Score: 8.36 # Score Detail : 1:0, 2:3, 3:3, 4:0.66, 5:0, 6:0.25, 7:-0.55, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCGCATGGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCCCGCATGGGATGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.40,-9.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [24-31] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //