Array 1 65034-64537 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPVR01000001.1 Streptococcus equinus strain ICDDRB-NRC-S6 SbS6_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 65033 36 100.0 30 .................................... AAAATTTTATCATTGGTGGTGTAAGGAAAT 64967 36 100.0 30 .................................... AGGACGAAAAAAATCGTGTGGTTGCCTTTA 64901 36 100.0 30 .................................... CAATATTTTCCCTCCTTTCCTCAAAAATTA 64835 36 100.0 30 .................................... CAAAGGTGTTTCGAAACACAACGGCGGATA 64769 36 100.0 29 .................................... TCCTATCATGTCATTTAAGCTAATAAGTT 64704 36 100.0 30 .................................... GGAAAACGTCCTATTTCCACATGGCCTATG 64638 36 100.0 30 .................................... ACTGAAATCACGCTAGCTAATATGGTCGAG 64572 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AAACTTTCTTTATGATTAAACCAGATGGCGTGAAACGCGGACTTGTTAGTGAAGTACTTAAACGTATTGAACGTCGTGGTTTCAAAATTGAAAAATTAGAAATGCGTATGGCAACTCCTGAGTTGTTAGAAAAACACTATGAAGACTTGGTTGATCGTCCATTCTTCCCACTAATCGTTGACTTTATGACAAGTGGTCCAGTGATTGCTGGTGTTATGTCAGGAGAAGAAGTAATTACTTCTTGGCGTACAATGATGGGTGCAACAAACCCTAAAGAAGCTCTTCCAGGAACAATCCGTGGTGATTTTGCTCAAGCGCCAGCTGAAGGTGCTGCAACATTTAACATCGTTCACGGTTCAGATTCACCAGAATCAGTAGAACGCGAAATTGCCCTTTGGTTTGGGGAATAAAATAATTAAGTATGGAATTATTCGGAGCTGAAGTCAGGCTGAGACAAATGGCGCGATTACGAAATTTCGTGAGAAAAAATGGTCCACGAG # Right flank : TGTGGCTACTAAATATGAATACACCAAAACCCCACCTAGTTCGTCACTGGGTGGGGTAATCTATGTGGGTCATAGGTTTGCAGAATTGAGTTTTTATTACCTTTGATTAATAATAACGCTTTCTGCAAAAATTGTAAAATGATTTGCGGTAGCTGATTTTAGCGATATTTATCGTGCCTAGAAAACTTTTTATAGCACCAGTGGTGTTTATTTGTTATAATAGAAATAATGAATAATTGTATAGGATTATAGATAGATGGATATTCAAGAATTAAAAAAACGACAAGAAAAGATTCGCAATTTCTCAATTATTGCGCATATTGACCACGGAAAGTCAACTTTGGCTGACCGTATTTTGGAAAAAACTGAAACTGTCTCTAGTCGTGAAATGCAAGCTCAACTCTTGGATAGTATGGATTTGGAACGTGAACGTGGTATCACAATCAAATTGAATGCGATTGAGTTGAATTACACAGCTAAAGATGGTGAAACTTACATTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 68189-65636 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPVR01000001.1 Streptococcus equinus strain ICDDRB-NRC-S6 SbS6_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 68188 36 100.0 30 .................................... AAATAAATAGCGTAATTAATGGCAAGATCA 68122 36 100.0 30 .................................... TTGATTCACGTCTGATTGTTTCCAAAATTT 68056 36 100.0 30 .................................... ATTGGTATGATGTGGATGGAGCTAATAAAA 67990 36 100.0 30 .................................... GGTGTAAATATACAGGATGTCACGCGCTGG 67924 36 100.0 30 .................................... CAGACCATTTTTCGTAAACGCGAGAACCTT 67858 36 100.0 31 .................................... CCATTTTAGCTTCCAAAAACAATCAACAATA 67791 36 100.0 30 .................................... CTAAATGCTTAAACATGCCGTCTAGCTTAT 67725 36 100.0 30 .................................... TAGCAGAGCCGTTAGAAAGTGCTCTAGGGC 67659 36 100.0 30 .................................... CATTAGGTTCTTCGATGTATACGGCCTGAA 67593 36 100.0 30 .................................... CAAAATACAAATTTACCCATAAAGTTATAA 67527 36 100.0 30 .................................... ATAACCTATGGGTCGAAGCAGGTCACAACG 67461 36 100.0 30 .................................... TTGGAGATGGGCAGTTTTTGATGATTGTCT 67395 36 100.0 30 .................................... TCAAGGTAATTTTGGACAGCCACAAGGACA 67329 36 100.0 30 .................................... ATTATTGTGGCAGACATAAGCAATATGAAG 67263 36 100.0 30 .................................... TAACTTTTGAAAATCCAGGCGGTGACCGTG 67197 36 100.0 30 .................................... TAGCAGAGCCGTTAGAAAGTGCTCTAGGGC 67131 36 100.0 30 .................................... CATTAGGTTCTTCGATGTATACGGCCTGAA 67065 36 100.0 30 .................................... CAAAATACAAATTTACCCATAAAGTTATAA 66999 36 100.0 30 .................................... ATAACCTATGGGTCGAAGCAGGTCACAACG 66933 36 100.0 30 .................................... TTGGAGATGGGCAGTTTTTGATGATTGTCT 66867 36 100.0 30 .................................... ATTATTGTGGCAGACATAAGCAATATGAAG 66801 36 100.0 30 .................................... TAACTTTTGAAAATCCAGGCGGTGACCGTG 66735 36 100.0 30 .................................... CTTTCCGTCTGCACTATTGGCATATGCAAA 66669 36 100.0 30 .................................... TATTACATTTTAAAAGGAATGCCTGTCATT 66603 36 100.0 31 .................................... TCGAAAAAGATTTGATGAAAAAAATTCCAAG 66536 36 100.0 30 .................................... ATGAACCTAGGAGGTTGGGATATTGAACAT 66470 36 100.0 30 .................................... CTTATTCGATGTATGGCAGTCGTAATGGCT 66404 36 100.0 30 .................................... ATCTATATATGTTCTTCATAACGATTTCCT 66338 36 100.0 30 .................................... ACCTATTATATCACAAGCTACATCAGCCCT 66272 36 100.0 31 .................................... TTGCAAAATTGGTTGGACACAAAGACGCAAC 66205 36 100.0 30 .................................... CCACAAACCTACCTCTTATTCCAATGATCG 66139 36 100.0 30 .................................... GTGAGGCACAACGAAGTCTTTCCCGTAGAA 66073 36 100.0 30 .................................... AAATTTAAAAGCTTCTGGACAAGGCTTAGA 66007 36 100.0 30 .................................... CGAAAGCAATTTGAGGTGAACCTGGTCCTA 65941 36 100.0 30 .................................... TCACAAAGCTTTAAGGTTGTATGTACTAAT 65875 36 100.0 30 .................................... TATTACCGATTGAACAACTAGCATCTTCTG 65809 36 100.0 30 .................................... CATTTGTCAATAACAAAGAAGTCGCCAAAA 65743 36 100.0 30 .................................... CCTTAATCTAATAAACTATAAAATTATCTA 65677 36 88.9 0 ....................T...AAA......... | T,AAT,C,A [65641,65643,65648,65650] ========== ====== ====== ====== ==================================== =============================== ================== 39 36 99.7 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : TTTCACAAAGAAGAAGGTGGAAGTTTTTGGGTAGAATTTCCAGGATTCGGTGGTGAAACTGAGGGTAAAGATATCGAGGAAGCTATGAAGAATGCACGTGAAATGCTTGAGAGTTTGTTAGCTGCGTATTTAGATGAAGGACTTGCTCTTCCAAAAGTTATTGATATGAGTGAGTTAACCGTTGATGATGGCTTCATTACTCTGATTTAAGCTGATCCTTCACCGTATTTAAAAAAGACAAAAGCTATTCGTAAAAATGTTACGGTAGCAGAATGGTTAGTCAGATTAGCTGACTGTGAGCAGGTAAACTATTCTGAGGTTTTAACAAAAGATTTGGAGAAAAAAGTTGCAACTATAAGTTTTAAGATTGTTCAGGAACGTTGAAAAATCAAGGTTTTTAAGGTATAATAAAACTAACATTATGGAGCTGTTCGAGACTGAAGTCTGGCTGAGACAAATGGCGCGATTACGAGATTTCGTGAGAAAAATTGGTCCACGAG # Right flank : TGTAGTAAAAATTACTTTCAATGTTTTTCAAAAGTTTTCTTTTATGGTAAAATTGAAAGTGAATTTATTTTAGTTAGATAGGTTGGATTGTTTACATGGAAAAAACTTTCTTTATGATTAAACCAGATGGCGTGAAACGCGGACTTGTTAGTGAAGTACTTAAACGTATTGAACGTCGTGGTTTCAAAATTGAAAAATTAGAAATGCGTATGGCAACTCCTGAGTTGTTAGAAAAACACTATGAAGACTTGGTTGATCGTCCATTCTTCCCACTAATCGTTGACTTTATGACAAGTGGTCCAGTGATTGCTGGTGTTATGTCAGGAGAAGAAGTAATTACTTCTTGGCGTACAATGATGGGTGCAACAAACCCTAAAGAAGCTCTTCCAGGAACAATCCGTGGTGATTTTGCTCAAGCGCCAGCTGAAGGTGCTGCAACATTTAACATCGTTCACGGTTCAGATTCACCAGAATCAGTAGAACGCGAAATTGCCCTTTGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //