Array 1 171243-172857 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZOQ01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712431, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 171243 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 171304 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 171365 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 171426 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 171487 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 171548 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 171609 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 171670 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 171731 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 171792 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 171853 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 171914 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 171975 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 172036 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 172097 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 172158 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 172219 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 172280 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 172341 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 172403 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 172464 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 172525 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 172586 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 172647 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 172708 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 172769 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 172830 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 189365-191895 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZOQ01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712431, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 189365 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 189426 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 189487 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 189548 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 189609 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 189670 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 189731 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 189792 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 189853 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 189914 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 189975 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 190036 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 190097 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 190158 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 190219 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 190280 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 190341 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 190402 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 190463 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 190524 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 190585 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 190646 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 190707 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 190768 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 190829 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 190890 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 190951 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 191012 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 191073 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 191134 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 191195 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 191256 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 191317 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 191378 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 191439 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 191500 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 191561 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 191622 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 191683 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 191744 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 191805 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 191866 29 93.1 0 A...........T................ | A [191892] ========== ====== ====== ====== ============================= ================================ ================== 42 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //