Array 1 2-762 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFZB01000001.1 Paenirhodobacter enshiensis strain DW2-9 contig1_scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2 29 100.0 32 ............................. CTGTCAAGGTAGCTCTTGCACTTCTCCCAGAG 63 29 100.0 32 ............................. TATGAACACGACAAGAAGTATTATGAGGAAAC 124 29 100.0 32 ............................. AACACCGAGGCCGACAAGGCCGTCAGCGACAA 185 29 100.0 32 ............................. GCGAAGATCAAGACGGGCGGCATCCGGGCATT 246 29 100.0 32 ............................. TGGACCAATGCCACCGGGAACCGCTACGCCTA 307 29 100.0 32 ............................. CAGGTGCCTGCTCCGCGCCGCCAGATCAGAAC 368 29 100.0 32 ............................. GCGCAATATCCGGTGTCCATGCCGTCATACTT 429 29 100.0 32 ............................. GCGCAGCGGTCGAGCATCGCGGATCTTCAGGT 490 29 96.6 32 ...........T................. GCCATCATCGCCTGATTGGCCGCTGCCGTTTG 551 29 100.0 32 ............................. CGGTTCCCGGAATTCGTCGAGGCACATGCGAA 612 29 100.0 32 ............................. ACGACGAGGCCGACCGGGCCGCGGGCCTCGCG 673 29 100.0 32 ............................. CCCGCGCCGCACGTCGGGGCATCTGGGCCAGT 734 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.5 32 CCGTTCCCCGCACACGCGGGGATCAACCG # Left flank : TC # Right flank : AATCCCGTCGCCGATGACTACGCCTGGCTTCAGTGGCAATTGCGGAGGGCCGCATGACCGCCCGGTGCCCGACCTGCGGCGGACGCGGGCTGATCCACTGGCACCCCCAATGGGAAAACGGAAACACCCCCTGCACGCGCTGCGGCGGAAGGGGCCCATCGAAGAGGACGAGATGAAACAGACAGAGGGGAAATGATGGGCAAGACCGCTTTTCGCCAGTCCGACGTGACGCGCGCCGTGAAGGGTGCGCAGGCAGCCGGCATGGACATCGCGGCCTTCATGCGCGCGGCGCGCGTTCATGTCGCCCTGCCCTTCGCGATCGCCATCAAGACCGGCCCGCGGCAATCCGACGTGCTGCACATGACCTGGGCGCAATATGACGGCGCCTCGATTCGGCTGCGCCAGAGCAAGACCGGCAAGCGGCTGACCGTGCCGCTCACCCACAGCCTGCGGATCCGCCTCGACGCGATGGCGCGCCCGGCCGAGGTCATCTGCCTGAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCGCACACGCGGGGATCAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCGTTCCCCGCACACGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 36738-35916 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFZB01000045.1 Paenirhodobacter enshiensis strain DW2-9 contig46_scaffold22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 36737 29 100.0 32 ............................. AGGCTTACGCGATACTTAGAAAGGACTCTTAA 36676 29 100.0 32 ............................. GTCACTGGGTAACTTAGATAGGTTCATAGTAA 36615 29 100.0 32 ............................. CCCGAGACGTCGAACGCGCCGCCGATCAGCTG 36554 29 100.0 32 ............................. ATGGGCTTGAGGCCCTGTCCTACTAGGGCACC 36493 29 100.0 32 ............................. CATCGGAGACCAGACATCTGGACACTTCAAAC 36432 29 100.0 32 ............................. TGTCTCCAAGAGGGCAATCGTTGTTATCTCTC 36371 29 100.0 32 ............................. AGAAAGCCCCCTGCCTGTGTAGACAAGGGGCT 36310 29 100.0 32 ............................. AGTTGACGATATAGAGAGACACGAAAGGCACT 36249 29 100.0 32 ............................. CGGTGATCTTGAAGTAGCTAGTCATCTGGGTC 36188 29 100.0 32 ............................. TTCACCGTCGAGGTGACCGGCCGCGAGGCGAT 36127 29 100.0 32 ............................. GTATGGCCGGCCCGACGCAGCCGTTTATGAGC 36066 29 100.0 32 ............................. AAAAAATCGAACCCCCTATGGCGGTGGGTCTC 36005 29 100.0 32 ............................. ACATTGTGTGTGCAGTGCCGTGCTGTCAAAAT 35944 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.8 32 CCGTTCCCCGCACACGCGGGGATCAACCG # Left flank : | # Right flank : GTATCGGTCATGGTCACGACTCCTTGAAGGATACAAAAGGCCCCGTTGCGTTTCTGCTACAGGGCACAGGAGATTTCAGATGTTTCGTTTTGTTTCAGTGGTTTTTGTTGTTGCCGCCATGTCAGCGGACAGCATTCGCTGCCGATTAGGTCTCATTTATCGCGGTTCAGAATGCACTGGTTGAACATGGCTGCCCTGAGGTGAACCCAGACCGCTATGAAAGCCCGCAAATGACCGCTGCAATAGAGGACTTCTCGAAGGACTATGGCGGTAGCCCAACTGTTGCCGGCGTCCTCTCCACCATGATGGGGCTGGCAATAGAAAACCGCATCGAGGTCGCCGACCAAGGTCTTCCTCGCGAAGGTCGAGAAAGCCGTGGGAGAACAGCTAAGGGCCCCTGACAGCGCTAGGCTCAGGACTCGTTGTGGATCACAGCCAGAACAAGACGGTTGCGGCGAGCAGGATGGCGGAGAAGCATGTCTCTGGACAGCGGTCGTATC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCGCACACGCGGGGATCAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCGTTCCCCGCACACGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 273-786 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFZB01000052.1 Paenirhodobacter enshiensis strain DW2-9 contig53_scaffold26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 273 29 100.0 32 ............................. TCTTCGGACGAGCAACACGACAGGGCGGGTGG 334 29 100.0 32 ............................. GCTAGTCCCACGAATTTCACGGACTTATACGT 395 29 100.0 31 ............................. ATCGACGCCGAGCCGCGCCGCCGTGCCGGGA 455 29 100.0 32 ............................. GCGTGGTGCGTCAGCTCGGTATCGATCCCGAG 516 29 100.0 32 ............................. GCGCGCCGAGCATCCAGCGCTTCAACGGCGGA 577 29 100.0 32 ............................. ATCGCCTGCCGATTGGGGGTTACGGGGTGGAT 638 29 100.0 32 ............................. CAGCGACGGATGCGCACGAACTGGCGGACAGC 699 29 100.0 32 ............................. TTCGCCGGCCCCACTGTGATCGGCGCCAGTCC 760 27 82.8 0 ..C.........G....--.......T.. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 CCGTTCCCCGCACACGCGGGGATCAACCG # Left flank : TCATTCTTCGGTCTCCCCGATGATGACAGCCTAGGTCTTCGGCCCGGCGATGCCGTAATGGTCTGGTCGGTGCTGAATGATCAGGGCTTCGACTTTGCCTCAGCAGGCCAAAACCGTCGGATGCCCGAAGATTTCGACGGGCTGAAGCTGATCGAATTTTTCTCCCAGAACCGCTAGACGGACGGCATCGGCATGTGCGAAATGTGCCGGAGAATTCCGGTGCGCTCTTTGACAATTAAATAGCGTTTTGTTTCCAATGGGATACACGAAGAC # Right flank : GCACGAGGGGCCGAGCCATAGCGCAGGGTGGGCCTATTCCCGCGGCCCCACCCCCCTTCCCTGCCGGCCTCAGATCAGCCGCGCCGTTTCTTCCCGGTTCGACACCAAGAGCTCGCGCGCCTCGGTCGAGCCGGCCGCGCTGACCGAGTAGCTCAGCTTCAGCTCTTCGAGGTGGAACCGGCCGAACACCTCGCGGATCTCGGGCGTATCGTTGATCGACATCAGGAACCCGCCCTTGATCGCGGCGAGCTGATCCGCCATCCGCGCGAACTGCGCCCGGTCGAACAGGCCCTTGCCATAGTCGTCCTCGCCCCCGAAGTAAGGCGGATCGAGGTAGAACAGCGCGCCGGCGCTGTCATAGCGTTCGATCACTTCCGCCCAGTCCAGGTTCTCGAGAACGACCCCGTCGAGGCGCTCGCGCGCGTCTTCGAGGATCGGTTCGATCCGCGCCAGCGACCAGCGCGGCCCGGTGGTGGGCGAGACCCCGAACACCCCGCCGA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCGCACACGCGGGGATCAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCGTTCCCCGCACACGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //