Array 1 13001-10387 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDCI01000004.1 Listeria monocytogenes strain ICDC_LM0322 LM0322Scaffold4_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 13000 36 100.0 30 .................................... GGCGATTCTGTTGAAACTGCAACGAAACTT 12934 36 100.0 30 .................................... CCACGTCAGACCAAGAACTTAAAACTATGC 12868 36 100.0 30 .................................... CTAAATTCATGTTGCGGGATGTTGTGGATG 12802 36 100.0 30 .................................... GAACTACAGCTTTTTTGAATTCATTTTTAT 12736 36 80.6 30 C.GAC.A.A........G.................. TCAGACTTCTCTATCCACAATAAACGCCCT 12670 36 100.0 30 .................................... GCGAGTCAATTCATCAAACCCAATCAGAAA 12604 36 100.0 30 .................................... GTGTACACGATAGTCCAAGTCGGTATTTCC 12538 36 100.0 31 .................................... CTCACGTTGTCAAGGTCAAATTTTAGATATG 12471 36 100.0 30 .................................... GAGGTTCGTGGGGGTAATCCCGGCTTGCGA 12405 36 100.0 30 .................................... AGAGGCAACGAGACTACAGACGCACTTAGA 12339 36 100.0 30 .................................... TTTGGTCGAATTCTTCCGCATCTTTAAACT 12273 36 100.0 30 .................................... TTAATGAAGAACTAGAAACAATTGAAAACA 12207 36 100.0 30 .................................... GCACGTATGATCGTCTTCTTTGATGACCTC 12141 36 100.0 30 .................................... TACTCGTATAAAAATCAAGAGAGACGTATT 12075 36 100.0 30 .................................... CTTCCGCGTTACATGTTTGACATCAAGTAA 12009 36 100.0 30 .................................... GGTTGTGCCGTCACCCGTTGGTGGTAGGCT 11943 36 100.0 30 .................................... TTTTCTTTTTCACGATGCGATCGAACGTTT 11877 36 100.0 30 .................................... AGTGCAATATTTAGCGTACACATCTTTTAC 11811 36 100.0 30 .................................... TTGGTCAATAGATGACTGTATTTCTTGCTC 11745 36 100.0 30 .................................... TGAAACACACAACATTTCAGAATGGCTTAG 11679 36 100.0 30 .................................... ACTTACTGAACAACATTGATTACCACAGTT 11613 36 100.0 30 .................................... TAATAAACAAGAAATATTACTTCATGAATC 11547 36 100.0 30 .................................... CACTATCCACTACAGTGATTTGTATTGTGC 11481 36 100.0 30 .................................... GTAATCCCAATTAACCCCGCAGAGGGTGTA 11415 36 100.0 30 .................................... TGTCATGGCGAAAGGTAAAACGGTCGATTG 11349 36 100.0 30 .................................... AGTGTTGGAGACTGCAAGGATTTCCGGATT 11283 36 100.0 30 .................................... AACCTGCAGGTGCTGTGTTCACGTCAGCAA 11217 36 100.0 30 .................................... TTGATGAGAATCTATACAGGTACTTAACCG 11151 36 100.0 30 .................................... TGTTGTCAAAGATGGTAATAAATGGGTGAC 11085 36 100.0 30 .................................... CATCGAATTGATACTTTTCGAGTGAAGCAA 11019 36 100.0 30 .................................... GTGGGAAACGTTAAATATTATAAAACAGAT 10953 36 100.0 30 .................................... GCATCGTACCCCAGTTCATGAAGCGCGGTA 10887 36 100.0 30 .................................... ACAAAACTCTCTAATTCAATTGCTCCATCA 10821 36 100.0 30 .................................... TTTATAAAGAATACTTGCGGGGCATAAATG 10755 36 100.0 30 .................................... GTCTAAACTTGGAATATAACTTAGGTCTTG 10689 36 100.0 30 .................................... ACTGATGAAAGTATTTCTCCAATGACAAGT 10623 36 100.0 30 .................................... TTAAATACGATGGAATTAATCTATCGATGC 10557 36 100.0 30 .................................... TCAAAGAGTTTATACCTGTTTTGATTGAGT 10491 36 100.0 30 .................................... TAATATTCTTCCCCCCCATCGCTAACAGGG 10425 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [10390,10393,10398] ========== ====== ====== ====== ==================================== =============================== ================== 40 36 99.2 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCACTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCACTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATCTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAGTTTAAAAATCTTGTATGATTATATTCTAAATACGAGTAAAGATAATGACACGCTTGAACTATATACTGCTTGGAAAAGCGAGGAAGATTTCCTGCTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGATAGAGAACTATTAGTAATTAAAAAAGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //