Array 1 468210-468969 **** Predicted by CRISPRDetect 2.4 *** >NZ_MEKD01000002.1 Salmonella enterica subsp. enterica serovar Kedougou strain CFSAN039534 scaffold_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 468210 29 100.0 32 ............................. CGGTTGCTGTCGTTGACGGCGTCGCGGTACAT 468271 29 100.0 32 ............................. ATGGAAAATATGAATTTAATGTTTATCCTGGT 468332 29 100.0 32 ............................. CCCCATATCCTTGATGAGGTAAATTTTTATTT 468393 29 100.0 32 ............................. TTTTACACACTGGCTGAGGGCGCATCATATCC 468454 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 468515 29 100.0 32 ............................. CCACGGCGCGATTTGCTGTAGTTCCCGCGTGA 468576 29 100.0 32 ............................. ATCGCCGTGTTGGTCAAATATATGACGACTAA 468637 29 100.0 32 ............................. TTCGCGCCAGATTTTAGCGAGGTGATACAGGT 468698 29 100.0 32 ............................. TGCTGATGGTAGTGTGTTTGTGTTCCATGCTG 468759 29 100.0 32 ............................. TCTGTGTTGCTGCAAAAACGTAGGTGCCAGGG 468820 29 100.0 32 ............................. TAGCGGGAAGTGGAAACCGAATTGAACCATGA 468881 29 100.0 32 ............................. CATTGAAAACTATGTTCATGCCAGCATTTACT 468942 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCATTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGCCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 485226-486597 **** Predicted by CRISPRDetect 2.4 *** >NZ_MEKD01000002.1 Salmonella enterica subsp. enterica serovar Kedougou strain CFSAN039534 scaffold_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 485226 29 100.0 32 ............................. GGCTTTATAAACTGGGCCGCATAGCTTGGGCT 485287 29 100.0 32 ............................. CGCTGTGCTAACAGCCCCATGTCGTATCCCTG 485348 29 100.0 32 ............................. GCAGGTACTGAATCGCGGCGGATTCGGCGACA 485409 29 100.0 32 ............................. ACCCGGTTTTGATAGTCGTCCCAGCTATCTCC 485470 29 100.0 32 ............................. GCTAAATGAGTATTACGGCACGTCTTACGGTT 485531 29 100.0 32 ............................. TGTCGATATATTCACGTACCTGTCCGGGGTAA 485592 29 100.0 32 ............................. ATTCTACCTGGAGCGATTGCTACGACTACACC 485653 29 100.0 32 ............................. TTACTCGATCATCTAAACACCCCTCCGGACCA 485714 29 100.0 32 ............................. CCGCGTAGAGAGTTGATCTTGTCGCAACTGGA 485775 29 100.0 32 ............................. GATCTGATTCAACATGTAAGAGTCGTACAGGA 485836 29 100.0 32 ............................. CTGCGCGACAAACGCCATACGCAGGAGGAAAT 485897 29 100.0 32 ............................. TTCAATGCTAAATCAGGTCGCCGCACCGAGAT 485958 29 100.0 32 ............................. GCCAGTCATTTGCTGGCCAGATCTGAAAAGCA 486019 29 100.0 32 ............................. GCGCTACAAAAACGAGGAATATCGTTAAACGA 486080 29 100.0 32 ............................. TTTTCTTTTCCTGCCGGAACAGCGCTTTTTCA 486141 29 100.0 32 ............................. AGTTCAACCGATTTTTTACACGGCGTTCGCAC 486202 29 100.0 32 ............................. AGCCCAAACTGCGGGATAAAATCTTATTCAGC 486263 29 100.0 32 ............................. AATGGGCGGGCGTGCGGTCCCAGTTCGTTGAT 486324 29 100.0 32 ............................. CTCCACGCGTTTGATCTCCCGCTGGTACTGGT 486385 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 486446 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 486507 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 486568 29 96.6 0 .......T..................... | A [486595] ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTACCGCCAGCGATACCAGAACCTGAATCCCTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGACTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGATAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //