Array 1 24448-22895 **** Predicted by CRISPRDetect 2.4 *** >NZ_CNAA01000032.1 Neisseria meningitidis strain NM2602, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 24447 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 24381 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 24315 36 100.0 30 .................................... TTAAAATAATAACCCAATACACGATGTTAA 24249 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 24183 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 24117 36 100.0 30 .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 24051 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 23985 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 23919 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCATCCTAT 23853 36 100.0 30 .................................... TCCCGACATTGACGGAAAAACCCGAAAGCA 23787 36 100.0 30 .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 23721 36 100.0 30 .................................... TTATGCCGTTTTCATCCGGCTTGAACATTT 23655 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 23589 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 23523 36 100.0 30 .................................... TTTCTTTTTGTAATTGTTCTGCCTTTTTTA 23457 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 23391 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 23325 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 23259 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 23193 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 23127 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 23062 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 22996 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 22930 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 24 36 99.8 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCT # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //