Array 1 24303-24667 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCZA01000003.1 Lactobacillus sp. UMNPBX9 NODE_3_length_93073_cov_107.723, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 24303 36 97.2 30 ......................C............. TGTGAATTATAATCACTCACATAAACGTGA 24369 36 91.7 30 .................A..C..............T CCAAGTCGGCTTGTGAGTGTATGGAAGATA 24435 36 100.0 30 .................................... GATCTCCCAAGCGAAGGAATCGAAGGCATG 24501 36 100.0 30 .................................... TATGCTCTAAAGCTCTGAATGTTTTTCTTG 24567 36 91.7 30 ......................CT......A..... GTAGGACTGTCATACCTATTCCCAATACGA 24633 35 94.4 0 .................-..C............... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 95.8 30 GTCTTACACCTATGTCATTTAAACTAGGTTCAGAAC # Left flank : ATTCTTTCAATGCGTTTATAAACTTCTTTACTTTGTTTGTTCCTAGGTAAAGCTTGAACTTCATCTAACTCACTAACTGGCTTATAAACTTCAGCTAGTAATGCGTTCCACATCTTGATATTAGCAAACATATTAAACGTTAAATATGCTTGTTGATCCTTAGTAGGATAAATTCTAATTCTACGACTTTCTAAAACTTTTTCTTCCATTTTTCTACAACTCCTTTTAAAATACCAATGCAATTTATGTATAATCTTTTGGCTGACTACACTACATTAACCTTCCACAACGGACGTCTTTATTTGTGCTATCAGCACTTTTTTGGGAACTCTTCAACAAAGAAAAGCAACCTGCAATTCTTTGCTTGCGAAGATGTTTACCAAACTGTGAAGAGCAAGCACCCTCCTATAACGATGGTAGGAATCGAACCTACGTCGCCTCGCTTTGCTCTGCCATTGAGCTACATCGTTATTTTGACTTTAATTAAGCCCATGATTTCA # Right flank : CCATTGTTTCCTAAACTATATTTAATTGTGACATAAGCTTCTTGGGAACTCTTCAGACTTGCGATGTCTTATTGCTAGATTAACTAACTGACAACGTAGAGGTTAAAGATGTTTACCAAGCTGTCGAGAACAAGCGTCCTCCTATAGGCACTAGTGGAATTGAACCACTATTACAGTAACCATACGTGCCAACCTACAATAAATATAAAGGAGATGCAGGCATAAATTCCTGCGATAGATACAATGTACGCAGGGGTTAAGGAGAAACCCCCTATTAGCACTGGTAGAATCGAACTACCACTAAGCAACCATGCGTGCTAACCTTGAGTAAATCATTCAGTACAATCACACCGCCGCCACGAACCCTAGATGGCGGCAATAAGCATAGCTAGAATCGAACTAACTTTTATTCCAAAATGCTTAGATTTGCTAAGTCATGATAAGTCTTACACCTATGCCAATTCAACTAGGTTCAGAACTAGTATATATGCAGATGAGCC # Questionable array : NO Score: 2.74 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTACACCTATGTCATTTAAACTAGGTTCAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.70,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 25542-25110 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCZA01000003.1 Lactobacillus sp. UMNPBX9 NODE_3_length_93073_cov_107.723, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 25541 36 100.0 30 .................................... AGAACGCAGCGTTTTGGGCAATAATATTAT 25475 36 100.0 30 .................................... CGAAATCATCTATCGCTTTCATCGTTTTTA 25409 36 100.0 30 .................................... GTGGCTCTGCTGAATTCCCTGGAGCTGATA 25343 36 100.0 30 .................................... TTAGTAGTGAGGGCATCGTAAACAAGTTTT 25277 36 94.4 30 .............................AT..... GCGAAAGTTAGAAGACGGTGGTGAAGTCCT 25211 36 91.7 30 ..............C..............TG..... AGTACTAGCGGCTCATCTGCATATATACTA 25145 36 86.1 0 .............T.G..T..G........T..... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 96.0 30 GTTCTGAACCTAGGTTAAATGACATAGGTGCAAGAC # Left flank : AACTAGCGAAAAACAGTTGAGGCTCCTTAATGTTTGTTTCGCTCTAGTTAAGAAAGTCACATCTAGGGTTACCTAGGCTTGTGGCTTTTTTTATTTTTTAACTTTTTCGAATTTTATTTTAAAAAAGTATACAAAAACATTTGACTTAGAGTGTGAGATAGTGTATTATAATAAACGTAAGGCAAAGGGTTAAGCCTACAGGGACATCAGTAAACTACATGTAAGCCTCTATCGTTCCTGTAAGCATTAGCACAAGCCTTATAATCTTAACTTTATCTTTATTCATTTATGTACATTTTATGTGTAGCGATGCCAAACGGTAGATCAATGCAGGTGCAACTCCTGCCATCGCTATTTGGAGGACGCTTGTTCTTGACAGCTTGGTTAATATCTTCGGCCTCTGTATAATCGCAAATTGCATTAGTTTGTTTACGATTATGCAAGTCTGAAGAGTTCCCAAGAAACTTATGTCACAATTAAATATATGTTAGAAAATAACG # Right flank : TTATCATGACTTAGCAAATCTAAGCATTTTGGAATAAAAGTTAGTTCGATTCTAGCTATGCTTATTGCCGCCATCTAGGGTTCGTGGCGGCGGTGTGATTGTACTGAATGATTTACTCAAGGTTAGCACGCATGGTTGCTTAGTGGTAGTTCGATTCTACCAGTGCTAATAGGGGGTTTCTCCTTAACCCCTGCGTACATTGTATCTATCGCAGGAATTTATGCCTGCATCTCCTTTATATTTATTGTAGGTTGGCACGTATGGTTACTGTAATAGTGGTTCAATTCCACTAGTGCCTATAGGAGGACGCTTGTTCTCGACAGCTTGGTAAACATCTTTAACCTCTACGTTGTCAGTTAGTTAATCTAGCAATAAGACATCGCAAGTCTGAAGAGTTCCCAAGAAGCTTATGTCACAATTAAATATAGTTTAGGAAACAATGGTTCTGAACCTAGTTGAATGACATAGGTGTAAGACTCGTATTGGGAATAGGTATGACA # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTGAACCTAGGTTAAATGACATAGGTGCAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.80,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 39004-37131 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCZA01000008.1 Lactobacillus sp. UMNPBX9 NODE_8_length_62782_cov_83.2366, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================================================================== ================== 39003 36 100.0 30 .................................... TGTAAAGTCATCGCAATTCAAACAAGCTCT 38937 36 100.0 30 .................................... CTAATAACGCTAAAGAACTTGATAAATTAA 38871 36 100.0 30 .................................... AACACCACACAGAACAGCACAAAATGGGCG 38805 36 100.0 30 .................................... TGCCGGTATAAAAAACAAACGATAGGAGAG 38739 36 100.0 30 .................................... TTAGATCTCAATCTAGGATCATCTTAGTGC 38673 36 100.0 30 .................................... TCATTATCAGCAACCCAACCAATTACACTA 38607 36 100.0 30 .................................... TGGATCTGCCATAATTTCGTTTCCTCCTAG 38541 36 100.0 30 .................................... GTTGTATATACGGTTGTCATACCAGCGTTT 38475 36 100.0 30 .................................... AATAGCTATATAAAGGCGATGATAGGACTT 38409 36 100.0 30 .................................... AAACTGTTAAAAACATCAGGATACTGCCAA 38343 36 100.0 30 .................................... GAATCAAAAATTGGTAATAACTACCAATCT 38277 36 100.0 30 .................................... AAGGAATTAGACAACGTAGCTGAGAGCATT 38211 36 100.0 30 .................................... TTTAATTGACTTCTGAAAGCATTCATACCT 38145 36 100.0 30 .................................... TTTCTGACAAGTCAAGTTTTCACTTTGTCT 38079 36 100.0 30 .................................... AAACATCAGGAGTACATGTAATTACATTCA 38013 36 100.0 30 .................................... AACAAGTTCAATTTCTTACTAAAGTTACAA 37947 36 100.0 30 .................................... AATATCTCAGTTCTTGAGCTCATGGATAAT 37881 36 100.0 31 .................................... TTTGTCGTCGTTTCAATGAAACCGACATATG 37814 36 100.0 30 .................................... TTTAAGGGGTAAACATAAAAGATCATACCA 37748 36 100.0 30 .................................... TAAAAAATAGGCTTTTTTTGATTTTAGAAA 37682 36 100.0 30 .................................... CATATCGAACGAAAAAATTAAAGGTTGTAA 37616 36 100.0 30 .................................... GCCGTAAGGGCAACACTTGACCATCTTTGC 37550 36 100.0 30 .................................... TCTTCTCTTGAAGAATCTATTGCTCTTTCA 37484 36 100.0 30 .................................... GGTATTTTCTGTTTAATTCCTTAAACATGT 37418 36 100.0 30 .................................... GATACACTTGCCACTTTATCCAACTCACGA 37352 36 100.0 30 .................................... ACTTATTTCGATTATACATGATAACCAATT 37286 36 97.2 84 ..................................T. TACTTTTTTTTATGATATAATTTAGGCGTAATTTCAGAAGTATATTAAAGATCTTTAGGACTTGGAAAGTCACAGGAGGATTAA 37166 36 86.1 0 ......T...A.........T...AG.......... | ========== ====== ====== ====== ==================================== ==================================================================================== ================== 28 36 99.4 32 GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC # Left flank : AACAGACCGAATTGGTAAAAAATATATGAACGTATTGATTAAGAAGATTATCGAAAATCTTACAGACGATGAAAGACAGGCAATACTAAAATCAGTAAATGGTTTGTATGATCGTATTCGAGAGGTTTTGTATAAAATTGATATACCTTTACAAGTAGATTATGACAATGATTTAACAAGACTATTTAAGTATTGTCAGGTACATACAGAGGCATTGCTATGGAAAAATGCGTATGATAGAATATCTTCAGATGTTAAATTACATGTGGAACTAAACAGAGAAAGAATTATAGGTCTAACCAATGTCGCACATTATCTCACTAAAGAAGAGTTTCAGGAACTTGTAAATCTTGTTAAGGCGACTAACGCATCAATGTTTATAATTGAATTCACAGAAAAGAATGATCAGAGATTCTTTGAAAACTGTGATAATTACTATATTGATGAGGATTATATTGATTGGTACTAACGAATCGTTAAATTTTGATTATAAAATAACG # Right flank : TAAAGTACCAAAAATATTTTATAGTACTTATAAATCTATCAGAAATTTTCTGGTAGATTTTTTTGTGCAAAAATTTTGTATTTTATGCTATATTATGGTTGATAACGTAATATTATATGATATATAATATAGTTGAAGATAAGATATAAAAGAAAGTGAGGGATGATGATGAAAATTCAAGTTAGTTCTGATTTACTAGATGGTTTAGTATTAGCGCTTTTAGATAAGCAAGATTATTATGGATACTCATTGACACAGGATATGCAAAGAGCAATTTCAATTTCAGAATCAACACTCTACCCAGTATTACGCAGGTTAAAGAATAATGGTTTATTAGAAACATATGATCAATCATATCAAGGGAGAAATCGTAGATATTATCGCATAACAAATAGTGGTGAAGAACATTTAGGAAGAGTTAAAAAAATGTGGAGCGACTACAAAGTTAGTTTGGATTCAATTTTCGAAAAAAATAGAGAGGGGGAATAATAATGAACTCA # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //