Array 1 932301-925831 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT981265.1 Candidatus Nitrosocaldus cavascurensis strain SCU2 chromosome NCAV, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 932300 30 100.0 38 .............................. ATTCAAGAACTGAACTGAACTGAACTGAACTAATCTTT 932232 30 100.0 37 .............................. TGTGCATATACAGGAAATGATATAAGATATAGTTCTG 932165 30 100.0 36 .............................. AAACTTTCATTTCTTATGAAATATAGTAATTTTATG 932099 30 100.0 38 .............................. TCTGCAAAAGCACTAAGTTCCTGTATTTATTATAATAT 932031 30 100.0 36 .............................. TATTTGTTACAACTTTAGTCAATAATTCTTTATATC 931965 30 100.0 36 .............................. TCTGTAAATTTGTACCACTCTTTCATTAAGTTGTGT 931899 30 100.0 36 .............................. AGGCCCCTCATTTCTTAATAGTAACATTTATATAGC 931833 30 100.0 37 .............................. TTACCAGAATCATTCTTTATGTTACCTTCACTATCAA 931766 30 100.0 39 .............................. AACGCGTTTGTTAGTTCTACTTTTAAAACTGTTAAGAAC 931697 30 100.0 38 .............................. TTTGTTAGCAGTCAAAGTTGTTGATCCTGTAGCTCTTA 931629 30 100.0 37 .............................. CGTACTGAATTATCACGCTATCCTCAACCATTTTTAT 931562 30 100.0 37 .............................. TCCGAGCGAGCTGTTGCAAAGAAGGAGAAGTTTGTTA 931495 30 100.0 37 .............................. TTTTCTTTAGCTTCAAGTCTCTTGTTATAAAAGTATA 931428 30 100.0 36 .............................. TTTGTTATGAAGAATAACATCTTTCCTACAAAGCTA 931362 30 100.0 37 .............................. AACTTGCCGTATAGCGAGTTTAGCAGCAGCTTGTAGA 931295 30 100.0 37 .............................. TGCATTGACTTGTGTGTTTTTGCTTATCTATTACTAA 931228 30 100.0 37 .............................. CTGTCTCATCGAACTCATAACCGCTATGTATAAAACT 931161 30 100.0 36 .............................. TATTACTTAGTAATAGATAAGCAAAAACACACAAGT 931095 30 100.0 36 .............................. GCTTAATTCCCTCGCGCGCAAGATCGTCAATATTAT 931029 30 100.0 38 .............................. TTTTTTCCTACCCCTCAGCAAAATGTTCGATAACTTGA 930961 30 100.0 38 .............................. ATAAGGTAGGGAATACCCCAGCAACCTAGATGAGGCTA 930893 30 100.0 39 .............................. TATGCGGAGGAGGTTGCAAAGAAAGCAGATAGCATGCCT 930824 30 100.0 37 .............................. CTGCTTAACTTTTACACTCAGTGTATAATTAACAAGA 930757 30 100.0 36 .............................. ATACGATACATTCTTCGAAGATCGACTCGTGTTGGC 930691 30 100.0 37 .............................. TTGAGCTAACTCACCCTTGCAATTTTTAATATGTAGA 930624 30 100.0 36 .............................. TGGTGCCCCCTTCGAACGATAGTACTTTAAAGTCAA 930558 30 100.0 38 .............................. GAAATAGTGTCCTGGCATATTAACTAACCTTGATAATG 930490 30 100.0 37 .............................. GCGGAGAAGGCTGTTGCAAAGAAGGAGAAGTTTGTTG 930423 30 100.0 36 .............................. CATTAACAATTAAACTATCAGTATCGCAATAATACA 930357 30 100.0 36 .............................. CTATATGAATCTAATTCAAGTTTAATTGCATCAATG 930291 30 100.0 36 .............................. GCAAAGAAGGATTCTCTTGAAGGTTCAAAGGTAGAG 930225 30 100.0 36 .............................. TTTTTGTTATACCGCTATATACTCTTTCTGCTAATC 930159 30 100.0 37 .............................. CCTTTTCCATAACACGTATCATACGTTTTATTTCTTC 930092 30 100.0 37 .............................. AGTACTGCAAGATTGTTTGCACCAAGCGCAGAGAAGA 930025 30 100.0 39 .............................. TTAATGTTTAAGATATTCATTGCAAAAGAAATCAGTCAA 929956 30 100.0 38 .............................. AAGCGATTCGTTTGCTCCTCTACCTAGTCTGATGCTCT 929888 30 100.0 37 .............................. ATGTAAATCAGAAGAATGCAGCTCCTGATCCAGCAAG 929821 30 100.0 38 .............................. TGCAACATCTGTAACACTGAATAAAAGTTGACACTCTG 929753 30 100.0 38 .............................. TTATAAATTTTATTCGTAAAATCGGTAAATGCATTTTT 929685 30 100.0 36 .............................. TTCCATAACCGTATCCCATTAAACCACCCCAATTAT 929619 30 100.0 36 .............................. ATATCTTCATTTCTTATGAAATATAGTAACTTTATG 929553 30 100.0 37 .............................. TCTGAGAAGGCAGTTGCAAAGAAAGAGAAGTTTGTTG 929486 30 100.0 40 .............................. AAGTAATCCTTTACGCTGTCCTCGACGTCGTTGATTTCAT 929416 30 100.0 37 .............................. GAGATTCGGATATTATGTCATTCACGATATCATCATC 929349 30 100.0 37 .............................. TGCTTGTTGTATGATCTGTTGTTGTTGTTGCTGTTGC 929282 30 100.0 36 .............................. GTACGTGCTTATAGGCTCACAGAACTTTGATTCAGC 929216 30 100.0 39 .............................. TAGTTTGGTTTAGTTGGCGTCTCTTTCATTATCCATATA 929147 30 100.0 37 .............................. GCAGACCCTTACCGCCCGTATGGGTAGTATGTGCACA 929080 30 100.0 36 .............................. GCAATCTGACCAATAACATCTTATTTCTTTATCTAT 929014 30 100.0 39 .............................. GAGAGGTTGCTATTACTTCATCACCGTACTGCAACTGTA 928945 30 100.0 36 .............................. TAACCACCTTTCTAAGATACTCAAGATTCATTTCAT 928879 30 100.0 36 .............................. TTATTCATGTGGCAGAGTTCTTCAAACATAACAGTG 928813 30 100.0 36 .............................. TACAATGCTGAGAGTTGGCTTCTGATTTCATCTCTG 928747 30 100.0 37 .............................. TTAAGTAGAGAGATAAGGCATAATCTTAATAAATTAA 928680 30 100.0 36 .............................. CTTAACCATTCTCTAAATGCCATCTCTTTCTTAGTC 928614 30 100.0 36 .............................. AATAGAGAGGCGTATTTTACGCCTCTCCAAAAGAGG 928548 30 100.0 38 .............................. TGTTATAGGCGTTGCGCTCTTCCTCCTCCATTTCATAC 928480 30 100.0 36 .............................. TTCGAACAAAATTTTATTTTATGTCGCCAAATAAAA 928414 30 100.0 36 .............................. ATGTCCTAGCGTCAAATATGCGTAACGTAAAATAAA 928348 30 100.0 37 .............................. AGCGGATGCATGCCCCCGAATAATATGAATCCCTATT 928281 30 100.0 37 .............................. ATACAATTTCCATGTTCCTGAAAAGGATCGATGCAAA 928214 30 100.0 36 .............................. TAGATGCCTCAGCCCCAGATGCAATCCTACCTATTC 928148 30 100.0 37 .............................. TTGCACAAGCAGAGGTAAATGAGGAGTGGTTAGGGAT 928081 30 100.0 36 .............................. TGTCCATATTGGGACAAGGCAAAATTTAATATTTGC 928015 30 100.0 39 .............................. TGTATAGGATCGTGCCTCCTTAATTGCGTTCATAATATT 927946 30 100.0 36 .............................. CTCATTTGCAGGATCAATTCGCAAATTTCTAATGAA 927880 30 100.0 36 .............................. ATCTCGTTCGCCTTTCATACTCCCTTTACGACTCAG 927814 30 100.0 36 .............................. TTCCTAAAAACCTCCCTTTTCAGGACTTCTATTATC 927748 30 100.0 37 .............................. TCGCTACAAATTTATGGTGTCTTTTTTGAAAACGATC 927681 30 100.0 37 .............................. TTCCCAACTTGATCGAATTAGGCGAACCTAATTGCTC 927614 30 100.0 36 .............................. CCTGTTGAACCTGCTACTGGTATCTATCTCAAAGCT 927548 30 100.0 38 .............................. ATGCTATGAATGATGTTACTATACCTATCACTACCTTA 927480 30 100.0 37 .............................. AACACCATCCTCTTCTCTATCTTTCTATCTCGCTTCT 927413 30 100.0 40 .............................. ATGTTTGTATTAGTTTTGTATTTATTTTTATTTTCTAATA 927343 30 100.0 37 .............................. TCAATTATAAAATTGCTTAAAAAGATTATAGCACATT 927276 30 100.0 38 .............................. TTGTTTGATGAACTCTTTGATCTCTGCAGGAAGTGAAG 927208 30 100.0 38 .............................. AGAAATTGCTGAATCAGTTGAAGAAGTGATTGTGGCGC 927140 30 100.0 36 .............................. TTAGAGCATAAGCCTAAACGATTAGAAGGGAAGTAT 927074 30 100.0 37 .............................. ATAGGAGATGAGGTAATAGTGCTAGAGGAGGGTGAAC 927007 30 100.0 37 .............................. GCAGGTTCAACAATACAGTTGAAGGGTGCTCAATTGA 926940 30 100.0 37 .............................. TCTTTCATTACTTTCATACATTCTATTGCTAAACTCT 926873 30 100.0 39 .............................. GTTGAATAACTGTATATAATAGTCATCATCAACAAAATT 926804 30 100.0 38 .............................. ATAGCATAACCATACCCCATTTTTCATACCACCCCTAT 926736 30 100.0 36 .............................. TGCTCTACCTATGCCATAACGTGTTGCTACTCTCTG 926670 30 100.0 38 .............................. TTAGGGTATAGTTTGTATGCGCATCGCATGCAGTAATA 926602 30 100.0 37 .............................. TCAAATTCTACACTTGCACTTAGATCTCTAGCACATG 926535 30 100.0 37 .............................. GATTCCTCGATAAAATCGAAGAATTAGGCAAATCAAG 926468 30 100.0 36 .............................. TTTCGGTAACAGTTATACCGTAAATTGAACGAGCGA 926402 30 100.0 37 .............................. GTAGGTGGTGCTGTAGGTGAATATATTTCACCTTATG 926335 30 100.0 41 .............................. TTAAGAGGAGATAATACATGTTTTGGCTATGTAGAAGATTA 926264 30 100.0 41 .............................. TTAAGAGGAGATAATACATGTTTTGGCTATGTAGAAGATTA 926193 30 100.0 38 .............................. TGTTATACATCTTATCGCATTCCTTGCATCTTAGCATA 926125 30 100.0 37 .............................. TTAGGTAACCTAAACTTCAAATTGCATCTATAGCATT 926058 30 100.0 36 .............................. TCAAATTTCCAACATAACGTAATTTTAATATAATTG 925992 30 100.0 36 .............................. AGGTTTATCTGAGACCTAAGCCTGTCTGTGCCTTCC 925926 30 100.0 36 .............................. ATTCTTCATATCAAGTTATTATCACACTACCGAAGT 925860 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================= ================== 97 30 100.0 37 GTTTGAATCGAACTATAGTAGGATTGAAAG # Left flank : ACCAATTTTGAGTCACGATCTCACTATACTACTTCTCTTACGTAGAGCGTATAATTATGAATAATCAAAAGAGTGCTATCACTGAACCCTTTAAGCATGTCTATGATTTTATAACACAAACAAAGCATTTGTGTTATGACTTATTGCATAGTCTTACTACGCTTCTCAAGGACGAATACATATTGCTTTATGAGAGGATACCAAAAGAACTCTTAAACCTTATCTTCTCTTTCTTTACCTAATAAAAGGGTACAAGATAAGATAGATTAATTAGGCAAAATGGGTATTTTATGCCCAATTAATTACACATTCATATTAGTCACGGTCTCGCTATAAAATGCGTAGAGAATATAGTAGCCATACTCATACTATAAGTTTATATATGACTAGTCAACATTTATAAATATCGTATACGACTAGAGCTTGACTGGTTCCCCTTTGAGTAGAGGAGGGAGAGTATATAAAAGGTGAAGCGTGAGAAGGGGAGGCGCCAGTGGGGG # Right flank : TAGCTCTTTATATACTAGATATGCGAAGTAGTATTAACAGTAGTGATAGCAATATGCTAGTGCTAATGCCAAACGAGCGTATACTTATGCAGAGAGACGCTTCTATAGTTATTAAGCACAAGTATGTTAGGGCCAAGGAGGAAGGAAAGGGCACATTCTATATCACTACTTATAGGCTAGTCTTTGAAGACCACAAGAAGGGCATAATTCTGCAGGTATACCCCTCCCAGAACGAGTTGCAAGCATACAGGGTAAACAAGAGCCTGTTAGGAGGAGAGAGGCTATTGTTAGACGTGCAGAGGGTCATAGAGGGTAAGATTCTCAATGTTCTTGCTGAAGTCTCTATGCCTAATGCTAGTGAGGCTGTTAAGGCTATCGAGGCTATGAGGAGTGATTCTGTTATAGTTGCTAGCAACAAGCATACTGCTAGTACTAACATAGTTACTGACTTGGAGGAAGAAGAGGAAGAGCCTTATGACGCCTTCCTCGAGACTAAGACC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAATCGAACTATAGTAGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA // Array 2 1555444-1548627 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT981265.1 Candidatus Nitrosocaldus cavascurensis strain SCU2 chromosome NCAV, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 1555443 30 100.0 37 .............................. CTTCTCCCTTCTTATCACACTCACTATTAGTTTTGCC 1555376 30 100.0 37 .............................. TTGCACATGTACTTTATAACTCTATAAAACAATATAT 1555309 30 100.0 36 .............................. ACGAGGGTCGATTTGAGAAGAATGTATCGTATTGGT 1555243 30 100.0 37 .............................. CTTTTGTAATTCTTGCACCATGTTTACGAGTGCATCG 1555176 30 100.0 38 .............................. CATATGCACAAGACTCCTATCCTTCATTAAAGAAGTTT 1555108 30 100.0 36 .............................. GATGTACAAAGCGCAGAGAGAGTTGTTGGCGTACTT 1555042 30 100.0 38 .............................. TAGTCTATCTGTCTGCCAGTCTGCATCCTACCCCCCAA 1554974 30 100.0 37 .............................. GTACAAGTCAAAACATCTATATATGTATCTCTTAGAA 1554907 30 100.0 37 .............................. GTAATATATTTCACATTTTTGCATAGTTTCTCTAACT 1554840 30 100.0 38 .............................. TTTTATAGATTTTTGCCCTTATGCTGATGCACAAATAA 1554772 30 100.0 37 .............................. AAGACGTTCAGCGAGTATGTCAACGAGCTAAGGGCGA 1554705 30 100.0 38 .............................. CAGGTTGAATTTTGGTGTAGATGTTTTAATATTCTACA 1554637 30 100.0 38 .............................. CGTCAGGTAAGCGTTTATCAATTATATCCTTTACTCTT 1554569 30 100.0 39 .............................. ATAAAATATGTCACATTTATGCATCGTCTCTCTAACTAT 1554500 30 100.0 38 .............................. CGCTAAGTACTCAATTAACTCTTGCTCGTCAATGATCT 1554432 30 100.0 38 .............................. CTATAAACTGCGCGGGCATATCTTCAGCATACTTAAAT 1554364 30 100.0 37 .............................. CGTTAACAATTAAACTATCAGTATCGCAATAATACAC 1554297 30 100.0 38 .............................. GGATAGGTTACTCTGAAAGATATATCTTCTGTCTCATC 1554229 30 100.0 37 .............................. CTTAGTCCCAACACGCCTGCCCTGTAGGGCTGACCTT 1554162 30 100.0 38 .............................. GCGAGAAGGCGGTCTCAAAGAAGGAGAAGTTTGTTGCA 1554094 30 100.0 38 .............................. CAGCTTTACAACCTTCATGTATACGACCTGTGATGCAT 1554026 30 100.0 35 .............................. ACCGACAACACAAGTCTAATTCCCTCACGCGCAAG 1553961 30 100.0 38 .............................. CGATGTGATTACATTTATAAAAGCGTTAGGAGATGAAA 1553893 30 100.0 40 .............................. TCGATGCGATTTCGTTTATAAAGCAGTTAGGGGATGAAAC 1553823 30 100.0 37 .............................. TAAAACGCTTGTTGTTGGGCATTGTTATTACTGAATC 1553756 30 100.0 37 .............................. TTATTAGTGTTGCTGACATTATAAACGCATATCGTCA 1553689 30 100.0 38 .............................. AATTTAAGATCATAAGCTCTAATAGAATCCATTGATAT 1553621 30 100.0 39 .............................. GACAAAACAAAGCTAATTGTAAAATTAACAGCATTAACA 1553552 30 100.0 37 .............................. TTTTTATAACTATATTATTTACTTTCTCCTAAACTTC 1553485 30 100.0 38 .............................. CTCATCTAGTCCGTACGCTCTAAGTGCTTGCTCCCACT 1553417 30 100.0 37 .............................. GAATTCGTTGGTAATATTCTTAAAATATTTCTTACCT 1553350 30 100.0 36 .............................. TTTCTTGTAGTTTCCTTAGCGATTCGTTTGCTCCTC 1553284 30 100.0 36 .............................. TGGAAAGAAGAGAGATGCGTTTCTATCGACAGCAAA 1553218 30 100.0 37 .............................. TTTTTCCCAGCTCTTCGATCGATGTTTTATAAAAGTT 1553151 30 100.0 38 .............................. CATAAAGCCTTTCTGCTAATCCCTTAATTGCATTACTA 1553083 30 100.0 36 .............................. TTTCTTATAAATACCATAATTTTCTACACCTCGCTA 1553017 30 100.0 39 .............................. AATAATCCCGTTTTGGCAGTATTTACTTTAGATCCCCTC 1552948 30 100.0 37 .............................. TTGCAATTTTTAATATGTTGATTTCGATCGTGCATTA 1552881 30 100.0 38 .............................. TACTTTAAAGATAAATACAAATATATATGCGGGAACAT 1552813 30 100.0 38 .............................. TGTTTACGAGTGCATCAACATTAACTTCAGTAAGTGCT 1552745 30 100.0 36 .............................. ACTTGATGCTTTCTTCTATGAACGATTTAAGTAATG 1552679 30 100.0 40 .............................. TGGAGGACAGGATCAACAAGGCAATATTTGTAATGAGAGA 1552609 30 100.0 39 .............................. GACGTGACAAGTGCACAGAGAGTCGTTGGTGTATTATCT 1552540 30 100.0 36 .............................. TTTATCACATATTGAATTATCACGCTATCCTCAACC 1552474 30 100.0 37 .............................. TACGGGCTTATACATTCCTAAGAGCTCGCTAACTTCT 1552407 30 100.0 39 .............................. GACTCGTATCACCACTGCCGGCTAAGAACTCAAATTGAG 1552338 30 100.0 36 .............................. GCAGATGTAAAAGGTGCAATCATAAGAATGGTTGCA 1552272 30 100.0 37 .............................. ATTCTGCAGATACATCACAGATAGTATACATGAAAGT 1552205 30 100.0 36 .............................. AAAGATATACTCGGTAATTCCCAGTGAGCAAACCAA 1552139 30 100.0 36 .............................. AGCGCTAACATTTGAAATCAACCTCTTTTGTAATTC 1552073 30 100.0 36 .............................. TTACACCACCCCCACAATTATCGCATCTTTAACATC 1552007 30 100.0 36 .............................. CTAAATAGGGAAATATCAAGGCAAATAAACAAAACA 1551941 30 100.0 37 .............................. TTGAGCCAACTCACCCTTGCAATTTTTAATATGTTGA 1551874 30 100.0 37 .............................. GAGCGACTCGTTTGCTCCTCTACCTAGCTTGATGCTC 1551807 30 100.0 36 .............................. TCAGCTCGCTGACTTCTGCACTCAGCTTACGATATA 1551741 30 100.0 37 .............................. TGACACGTATCATGCGTTTTATTTCTTCTATCTCTTT 1551674 30 100.0 37 .............................. TCAGATCGTAAAACTTGAATTCTGAATAACGATCTAA 1551607 30 100.0 36 .............................. ACGAATTCAGGGGTATTACCAGACACTATAAATCCT 1551541 30 100.0 40 .............................. TTCAATCCCAATACGCCTGCACGGTAAGGCTGACCTTGCA 1551471 30 100.0 38 .............................. CGACCTTCAGCATCATTACTTAAATCGTTCATAGAAGA 1551403 30 100.0 36 .............................. GAGAAAAGCACTTGCAGGCATATCAAGTAATAGTAA 1551337 30 100.0 36 .............................. TCTCATTCTCATTCTCATTCTCATTCTCATTCTCAT 1551271 30 100.0 37 .............................. GTGCAAACATGTACAGACAGAGATAGAGACAGATATT 1551204 30 100.0 40 .............................. TATTTTTACTACACCTCAAATAATACTACAAAAATTGTTG 1551134 30 100.0 37 .............................. AATTTGCCGTAAAGCGAATTTAATAGCAGCTTGTAGA 1551067 30 100.0 37 .............................. TTATCTAAATAGTAACATTTATATAGCCCTGGGCAAG 1551000 30 100.0 38 .............................. ATATCTAAATAGTAACATTTATATAGCCAAGGGCAAGG 1550932 30 100.0 36 .............................. TACAGTGAAAGCTGTATAGCCGCAAGAGCAATTGTG 1550866 30 100.0 37 .............................. ATCGACTTCTTTATATTCTTTATCTATGTATTTATAT 1550799 30 100.0 36 .............................. TTAACGACATTATTAATACTTTGAATCATATTTGAT 1550733 30 100.0 39 .............................. ACAAATTTCCCGGCTGGAATTCTGAATACCCAATAAACC 1550664 30 100.0 40 .............................. TTTGTTTATTTCTTTGATCTTCCAACCATTACCAATCATG 1550594 30 100.0 38 .............................. CTCACATCATTAGAATTGTGTATGATTGGTGCAGTCCT 1550526 30 100.0 37 .............................. CTCCTAGTTCATCATCTGCATCTAAGTCAATACCTAA 1550459 30 100.0 37 .............................. TTCGTAGAAGAGGTAGCAAAGAAAGCAGATAGCATGT 1550392 30 100.0 37 .............................. TTATATTATGCAGATCAAGTAATATCTCGATGTGTCG 1550325 30 100.0 36 .............................. TTATGATAAGACTCTATTGCTTCAGATATGGGTAGT 1550259 30 100.0 37 .............................. TAATATGTCTCACTCTCTTTATTTCTATTTTCTTACC 1550192 30 100.0 36 .............................. CTCTAACTGCAAATCTAACTAAATCTGATAAAGTAG 1550126 30 100.0 36 .............................. TGGCAAGCTTAGGAGATATGGGTATTTCAAGTGCCC 1550060 30 100.0 36 .............................. AATACAAAGAGGTTTACAGTGCCAATTGGGTTGAAT 1549994 30 100.0 36 .............................. TTAGATACAATTTCATTTATAAAGAAATTAGGTGAT 1549928 30 100.0 39 .............................. ATTAATAGGGAAATATCAAGGCAAATAAACAAAACAATA 1549859 30 100.0 37 .............................. ATCTCAACCAGACCTCCTGCAAAGATGTAGTACCAAG 1549792 30 100.0 36 .............................. AGTTCAGGAGATGATAAGTGCAAAGCAGAGAGGTGT 1549726 30 100.0 36 .............................. GAAAAGTACCTAAGGCCAAGAAAGGATAATAATGGT 1549660 30 100.0 38 .............................. TAAGCTGGATGTTATTCTTGCTCACCTGTTCTATGCTG 1549592 30 100.0 39 .............................. AAGATAGTCTTGAAGCAGAGGATGATAAAGGTAATAAGA 1549523 30 100.0 37 .............................. AAAGATATACTTCTTGAGATTGCTTACTCTAACTTAC 1549456 30 100.0 36 .............................. CTATTTCAACATCTCTATAACAATATGTAACTAAGT 1549390 30 100.0 37 .............................. AATTTGAAAGAGTTGAAAAAAGTGCGTGCGGTTTAAA 1549323 30 100.0 36 .............................. GTTTTGATAACTGTTAGGGCAATCCATGTGTTCAAT 1549257 30 100.0 36 .............................. CATACCTAGATGCAGTATATAATGCCAATATCTGCA 1549191 30 100.0 38 .............................. TCCTCTAGTAACATTACCTTATATTCTTTTACTCTTTG 1549123 30 100.0 37 .............................. ATAAGTTAACTGAGATAATAGAGAAAGAGATGCTTGA 1549056 30 100.0 37 .............................. AGTGAAATAAGTAATAAGTGGGTAAGAAGGCTATCAG 1548989 30 100.0 37 .............................. GATTTAAATAGACCTGCATCTAATGATGCAGTTCTAG 1548922 30 100.0 38 .............................. ATACTTGTGATTTATAGGCTCAAGTGTAGATATAGATA 1548854 30 100.0 36 .............................. CAAGATTTATATAACCCATAATTCTATACTATGGCA 1548788 30 100.0 36 .............................. TGTTGCTGGTAAGACTAAGGCAAAAGTAAGTATTAA 1548722 30 96.7 36 .............................G AAACTGAACCTGAAAGGCAAGCATTCATTGAAAAAT 1548656 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 102 30 100.0 37 GTTTGAATCGAACTATAGTAGGATTGAAAT # Left flank : ATGTTTAGTAATAATATATCTATTTCTAACATTAAGTTAAATATTACTTAATCAAGTGAGTAAAGATAAACTAGATAGATGAATTTAAAAGAAGCAAAGAAGGAGAAAGGCTATGAAAGTAATAATAGTATATGATGTTAATATAGAGAGGATAACTACTATAAGGAAGATACTTAAACAATATCTATCATGGGTGCAGAATTCTGCGTTTGAAGGAGAACTAACTGAAGGTAGACTAGAAGAGTTAAAATCTAGGCTTTATGAGGTTATAGATCCTAATACTGATTCAATAATAGTATATACTATAAGCAATCCAAGATGGGTAGATAAGAGGGTATGGGGTGTTGAGAAGGGAGGTACAGATAATATCCTCTAAGTTTATATACGACTAGTCAACATTTATAAATATCGTATACGACTAGAGCTTGACTGGTTCCCCTTTGAGTAGAGGAGGGAGAGTATATAAAAGGTGAAGCGTGAGAAGGGGAGGCGCCAGGGGG # Right flank : GAGCAGTAAGATAAAGAGCATCTTGCAGATGTATTTGTCTGAATAGAACTTATTGAACTGATACTATCGAGGATAAGAAGATAGATAGTTATACTTCCTGCTCTGTTTGTAAGGTTGCTAATCCGAATATCTCTGGATGAAGATCATGTATTATCTCTAACTCCCTGAATACATCTATTGCAGTCTTTGTAACCTTATGTGCCTCTTCAAGGTTTACTCCTGTAACCTCTACCCTATCAGGATGGTACTTTATCATTATCTTCCTGAACCTTGAAACAACATCGTGCCATCTAGCATCTGGTGGAAGTCCTACCCCTTCCCATGTGAGCATTCCCAATAACCTATTCTTCCTCTCAAATATCCTCTCTATATCCATCTTCTCCAATTCAACAACCTTCTCTCTAGGCCTCTCAGCCTTCTTGTTGAATATAAAGTGCCATCTTCCTAGAGTTCTTGCATCCTTCTCCTCTACACTAGCAGAGATATCCTCTCCTGCTAGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAATCGAACTATAGTAGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA //