Array 1 2815-27 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUXF01000065.1 Serratia marcescens strain 684_SMAR 264_3127_58872, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2814 28 100.0 32 ............................ ACGATGCCGTCGGTGTTCGCCGAAACGACGCT 2754 28 100.0 32 ............................ TGTGCGCAGATCCCTAACTGGATTTATGACGG 2694 28 100.0 32 ............................ GGCGGCCGTCAGCTGCCCGTCGCTGCTTGCGC 2634 28 100.0 32 ............................ GTCCCCCTGCCAGGCACTCATGAGTCGACAGC 2574 28 100.0 32 ............................ AAAATCAGCCCAGATTGTTGCATATCAGGCAC 2514 28 100.0 32 ............................ TGCCAGCGTCACGGCGGGCTTCGACCTGTGCG 2454 28 100.0 32 ............................ AACGAGGGTAAATTCGTCGCCAAAATGAAGCA 2394 28 100.0 32 ............................ TTTCACTGCGCCGCCCTTCACGCCCCGGATGG 2334 28 100.0 32 ............................ TATGGCTATCTCAACGATCCAAACTTCTTGCC 2274 28 100.0 32 ............................ AGAAAGCCGGAGAGCTGGCCGACGATCAGGAC 2214 28 100.0 32 ............................ ACTCTATGCGGCAAACCTCACCGACCCGCATG 2154 28 100.0 32 ............................ TTTGCTCCAGGCAGCTCCAGGTGCATGCGTCA 2094 28 100.0 32 ............................ ACAGATGCGTTATATGGGAACCCGTTCGCGGT 2034 28 100.0 32 ............................ TGATTCACAGCGGGCAAAATGCTGTCGGGTGC 1974 28 100.0 32 ............................ GCGAACAAATAACCTACGTTTCCAGGATTGAT 1914 28 100.0 32 ............................ AGTTATCGATTGCCGAGCGCGCCGCCTTTGGT 1854 28 100.0 32 ............................ CCACTGAGCAAAGCGTGGGTCATTGACGTAAT 1794 28 100.0 32 ............................ TTCACAATCTTTCCTTTCTCGTCGCGGTGATA 1734 28 100.0 32 ............................ TGCCGTATCGATGTCGGTCAGCACCACCCGCC 1674 28 100.0 32 ............................ TGTCCGAGGGTATCGATTGCACCCGAGAGGGA 1614 28 100.0 32 ............................ TTACTGGCCTTCTCCAGTCTTTGAGCCTTTTC 1554 28 100.0 32 ............................ AGCGCGTCGCGGACGTGATGACCAAAGGTTTC 1494 28 100.0 33 ............................ ATGCTCATTTTCGCGGGCAAACGGCGCAAATCG 1433 28 100.0 32 ............................ GATCAGCGGTAGGGATGAAATCGCCCGTTCCG 1373 28 100.0 32 ............................ AGTAAGTGGCTTTGGTAGGTGGTGCGATTAAC 1313 28 100.0 32 ............................ GACGTCGGCGCGGATTTCGGCATGGAGGCGCC 1253 28 100.0 32 ............................ ATCAGGGGCATGCAACATGGCAGAGGATAAAC 1193 28 100.0 32 ............................ ATAGTTACCCCTTGCCGAGTTAGAAAATGACC 1133 28 92.9 31 .......................GA... TGTTTTTTTTCTCAAACCCCTGAGCGGCTTT 1074 28 100.0 32 ............................ TGGAACGCAGTAGTGCGGGGGTCAAATACGAT 1014 28 100.0 32 ............................ GGACTTCAGCCTGTGCTAAGAGCGTGACGAGC 954 28 100.0 32 ............................ TCCTGAGGTGTTTGACCGCGTCTTCGGATTTG 894 28 100.0 32 ............................ TACGCCACCGCCTGCAGCGGCTCCTGCCGATA 834 28 100.0 32 ............................ TGTATCGAACATCGTCAATGTGACGGTAAATA 774 28 100.0 32 ............................ GAAACTTCGCCATTCCATCCGGCGCCGTCGGT 714 28 100.0 32 ............................ AATGATAATTTCTGCCGTGCCGGCATCCTCTG 654 28 100.0 32 ............................ AGGGAATCGGTTGATATCGCGCTGGTACGCCA 594 28 100.0 32 ............................ AGCGACCGGGAACCCGTTCGCGATCGAAACCC 534 28 100.0 32 ............................ ATAGGGATCGTGGCGCGCGTCACCAGCTGATA 474 28 100.0 32 ............................ TTGGGGTGACGGCTACGCCGGGACGCGCTGAC 414 28 100.0 32 ............................ GTGCAGACAGCACTGGCACGATCACGTTAACC 354 28 100.0 32 ............................ ATCATGGAAAGCCTTTATTCTAAAAAGAAATA 294 28 100.0 32 ............................ TCGGCCTGTTCCCACGTCAGCAACCATGTGAA 234 28 100.0 32 ............................ TAAGCAGCAAAATAAACCTCAACAGTCGAATG 174 28 100.0 32 ............................ GATGGATACCATTGCCAATCAGGTGGCCAGCA 114 28 100.0 32 ............................ TGGCGAACGTGGACTATTACGGCGACGCCGCT 54 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 47 28 99.8 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAACGACAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGAGCTGGCAATTCAGGTCATCAGTGGTGTCTATGCGTCTGAGTGGGACGGATGGTGATACCAAACAGGGAACCTATAATTCCCCCTAAAATGCAAAGATGTCACCTTACCCCGTTCTTGGTTGCCGAACCCTTTTTTGAGTGATACTTTTAATTTATTGATTTTAAATCATATTTTTAATCGCTTTAAAAAAGGCTTTTTGAACGGAGATTTCGATTTTCCTCCATCAATCAGCTGATTAGCGCTAATATGCAAC # Right flank : AACAAAACCTATTTCAGCCGGACGCTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [21.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 26-356 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUXF01000089.1 Serratia marcescens strain 684_SMAR 329_10042_206201, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 26 28 100.0 32 ............................ ATCGGCCGAGCGGGCGTGAAAACGGTAGGAAC 86 28 100.0 32 ............................ GATAAGGATAAGGCTCGACGCCGTGCAGCCGC 146 28 100.0 32 ............................ ATTACTGAACACCCACCAGCGGAGCAGTCAAA 206 28 100.0 32 ............................ TTCGCTTCCAGCTCTGCCAGTAGTTCGAGAAC 266 28 100.0 32 ............................ ATGGGAATGATGCCAAAATTTGCCAGTCCGGC 326 28 96.4 0 ....................A....... | A,A,G [346,349,352] ========== ====== ====== ====== ============================ ================================ ================== 6 28 99.4 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTATTTCAGCCGGACGCTGCGCGAAG # Right flank : AAAGTAATATGTATTTGATACATTCCGGCAGTGATCAATAAGTGGATGATTTTATTTTTCTGATTGATGAATATTGACTCGGTTGCAACGGATTTCCCTGGAAAAACGTGGTAGAACGGTGGTGTCGCCTGCATTGACATTCATCGCTTGTTATTTATTTTAATTGTAATTATTTCATTATGGATAAGAAATATAACAATGAAAAATACCCTTTCCCCCTCTGAATTAAAAACAATACTGCACTCGAAACGAGCAAACTTGTATTACCTGCAATATTGCCGAGTTTTAGTGAATGGCGGCCGCGTCGAATATGTCACGGACGAAGGAAAGCAGTCTCTTTACTGGAACATCCCTATTGCCAACACTACCGCCATCATGTTGGGAACCGGAACCTCGGTCACGCAGGCTGCAATGCGTGAGTTTGCTCGCGCCGGCGTTTTAGTCGGATTCTGTGGTGGCGGTGGGACACCCCTATTTGCTGCTAACGAAGTGGAAGTCGC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [16.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 8838-9944 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUXF01000089.1 Serratia marcescens strain 684_SMAR 329_10042_206201, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 8838 28 100.0 32 ............................ ATACAGTCGGAGATCAACCCGGCGGCGAACGG 8898 28 100.0 32 ............................ ATAACTGACGCTTAGCGGGTCAGTCTTCCACC 8958 28 100.0 32 ............................ TCAGTGTTGCCGGTGCCGCTTGCTGCCGCCAG 9018 28 100.0 32 ............................ TGATGGCTCAAGCAATGAGCATAAAGGTTGGC 9078 28 100.0 32 ............................ ATGATCGGCCCGCTGCCCAAGCGCATGCGCGC 9138 28 100.0 32 ............................ ATAGCGCAGTCCTTCACGCGATTAGCGTATGC 9198 28 100.0 32 ............................ GTATGCACTGTGGACTCCAGGTCATCGAGGCT 9258 28 100.0 32 ............................ AGAAAGGCATTCCGCCCTGGAAGATTCACCAC 9318 28 100.0 32 ............................ ATTCGGACGCGCTGCTGAGCGCCCAGGCGAGA 9378 28 100.0 32 ............................ AATAGGTTGGCTCGTAAAAGTGAATCGTGTCC 9438 28 100.0 32 ............................ CGGGTGCGTGGGCGCCCATCATTAGCTAAAAC 9498 28 100.0 32 ............................ TGGCACCGATTGGCAGGATATTACCGGCACGT 9558 28 100.0 32 ............................ ACGAGCATGGATAGTCGGGTGCGCGTGTTCGT 9618 28 96.4 32 ..........................G. GCCCCGCCAGCGCCAGCAGTGCCGGATGACTA 9678 28 100.0 32 ............................ TGGCTAATGACCCAACTTACAGCACGGCAAGC 9738 28 100.0 32 ............................ AGGGAAATCCAGGCCGATGAGGAAACGCGCAC 9798 28 100.0 32 ............................ ACGGAGGTGGCCGGCAGCTTGATGGAGAAGAT 9858 28 100.0 32 ............................ TTCGGCGGCCGGCCGCGAGCGTCTAGCCATCA 9918 27 82.1 0 .........T...C.A....-..T.... | ========== ====== ====== ====== ============================ ================================ ================== 19 28 98.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGCGCTGACGGCGCTGGGGGGATTCGACTGGATGAAAGGGTTACGGGACTATACCGACCTATCGCTCATCCAGGCTGTGCCTGCTGAGACGGCGTTTCGTACCGTCAGCAGAGTTCAGGTAAAGAGTAGCGTTGAGCGTATACGCCGCCGAGCCGTCAGTAAAGGTTGGCTGACTGAAGAACAGGCACGGGAAAGAATACCGATGGCGAACGAGCAGCGAACCTTATTGCCTTTTATTGCCTTGAAGAGTCTCTCCACCGGGCAACACTTCCGCTTGTTCCTGAAACAGGGTCAATTACAGGAAAGGCCAACGCCGGGCGTTTTTAGTTTTTATGGGTTGAGTGCCTCCGCTACGGTACCTTGGTTTTAACCCTCTTTTTTCGTTCAGAGGTAACACATTGATTTTGTTGCCTCTGAACGGTATCTGAAAAATTAGGGTTAAACCGAGGGATTTGACTGTTGTTCTTTAATAATCAGTTTGTTAGAGGCTATTTTGCTCA # Right flank : TAGAAGGGATAAAACTTTACCGACACCTGTTAACCAGGAAGCAAATACTCCAACGACAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //