Array 1 14245-15126 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYQZ01000050.1 Lactobacillus crispatus strain UMNLC9 crispatus10A4S2216, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 14245 29 100.0 32 ............................. TTAGAATTGGTGGGGATATTGCAGACACAACA 14306 29 100.0 32 ............................. TAAACGGCTATGTCTTTGACATAGCTCAAAGT 14367 29 100.0 32 ............................. AGTTGAAGCAAGAGCTATCTCCAATTCTGTTG 14428 29 100.0 32 ............................. TTATAAAAAAGACATTCTTGCAAGTTCACAAG 14489 29 96.6 32 ............................T TACTTGATCGCCCTAATTCAAAACTAGATAGG 14550 29 96.6 32 ............................T TAGTTAAAGGTTTTGGTGGTTTGGCTTCTGCG 14611 29 100.0 32 ............................. GATAGTAGGCCACCACCAGCGGTCTTTTTTAA 14672 29 100.0 32 ............................. GATAGTAGGCCACCACCAGCGGTCTTTTTTAA 14733 29 96.6 32 ............................T AGCTTGTTTTGTAGCTTGTAGCGTCTTTTCGT 14794 29 96.6 32 ............................T TTATCACGAAGTTCATTAGTTGTGAATGTGCT 14855 29 100.0 32 ............................. TAATTGAACAACTTGAAAATGGGGAGTTAACT 14916 29 100.0 32 ............................. CATCACAAAACATAGTGAAGCAGTTACACCCA 14977 29 93.1 32 .............A..............T GTTTCCACATACCTTGCATTCAGCTGATTTAA 15038 29 93.1 32 .............A..............T ATCTCTAGTAGCTCCTACAAAAACATCAATAT 15099 28 86.2 0 .............A.........-..TG. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 97.3 32 GTATTCTCCACGTGTGTGGAGGTGATCCC # Left flank : TTCGTGAACAAATTCTGCGACTGACTTCACAAGAAGTACCACATGCTACTGCTGTCGCAGTTGATCATATGAATACTCATCAAAATGGCAAGCTCTTGATTGAAGCGACTATCTATGTTGAGAAAGACGGTCAAAAAGGCATTATTATTGGTAAGGGCGGTAAGATGCTCAAGCAGATTGGGATTAATTCACGTCAAGAGATTGAAAGATTGCTTGGTGAAAAGGTCAACTTGCGTCTCTGGGTTAAGGTCCAACATAACTGGCGTTCTGACCCTAACTTTTTAAAGCGAATAGGCTATGACAAAAAAGAACTTTAGTTGAATTACTGTTGTATAAGCGTTGTCGAAAGATGACGTCTTTTTTGTATGTTTAGGGAGACAAGAAAATTCTATTCGTTGGATGACTAATGAGACAGAAATAGATACAATAGTAATTGACAAAGTGATGAAATTTTGGGATCTATTGTTTTGTGATTGTTGTTATATTGGGATTTGTTTACT # Right flank : CTATATTGGGATTCCTGAAGAAATCATGAATGTAATTATACGAGACCACAAGGAAAAATTTTAAAATCTCAGGCTTCTAAAAAGCAAAAAGAAATTTTTAATAGTTGGCAGGAAAAATGAAAGAAAATATGTAAAGACAACTAAAATAATCAACAGAGCTGCTCTTGGAATATTTATTGTTGCAGTAGTAATTTTTTATTATAGGGTTAGTGAAGTAAAATGACAGTTAGTGAAGCACAAAAAAAGACGACTAAAAAGTGGGATACCAAAAACAAAACTCGAAAACAGTATTTAAATCGGTTACTAAAAATTTTATTTTGAAAGAAGCCACCACAGAGGACCTTGAACAAATTAAAAAGTATTTTGGGCAAAGAAAACACGGAAAAGATTGATTGTGGTAGAAAACGCTGCATGAATAATTGTAATTTTTAGTAAAAAGTTTTGGAGGTACTTTTTAATGATTGATTTAAATAGTTCAGATATTATGGACGCACAAGAAG # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTGTGTGGAGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 38596-40026 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYQZ01000009.1 Lactobacillus crispatus strain UMNLC9 crispatus10A4S22118, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 38596 29 100.0 32 ............................. ACCTCCCCAAAGATTTCGATAAATAACAATTT 38657 29 96.6 32 ............................C AATTATTTAGATTTAAACCGTTATACTGGTTC 38718 29 100.0 32 ............................. AATATATATAGTACCCGTGTATTATTAATAGT 38779 29 100.0 32 ............................. ACTTGTACCAGATCCACCAAATAAATCCAATA 38840 29 100.0 32 ............................. CAGTTTTCACCAAGCATGAAAAGAGCTGGCGA 38901 29 100.0 32 ............................. ATCAACTTGCTCGTACAGTTCGGCTTCAAATT 38962 29 100.0 32 ............................. CGCAACACCAGCATCTAGGACATTGCCTAGAA 39023 29 100.0 32 ............................. TGATTTTAGTGATTTAATTCAATATCAGCAGT 39084 29 96.6 32 ............................C CACGATAGCAGGTTTACCAAAAAAGAACGGTA 39145 29 100.0 32 ............................. TGAAATTCAAACGATAGATTATGAATATAAAT 39206 29 100.0 32 ............................. TGATTTTACTAGTTCATATCCTACTGTTATGA 39267 29 100.0 32 ............................. TTTAGCCTAGCCTATTTATATGTTTAATTAAG 39328 29 100.0 32 ............................. ATATTGTAAAAGACCAGTTCTTAAATCATCGT 39389 29 96.6 32 ............................C ACCATTAATATCACTTACAATATTGACTTATT 39450 29 96.6 32 ............................C AAGATGATGACAATTCTTTCTAGTTTGTGAGG 39511 29 96.6 32 ............................C GTTGAAGTAGGTGATAGATTTGCAAGTATTGC 39572 29 96.6 32 ............................C AATGCTCAAACGTTAAATTTGGTTGATAAAGA 39633 29 100.0 32 ............................. TCAAAGATCCGGTTCACATCTACTCAAATGAA 39694 29 96.6 32 ............................C GTTTGGGACTTTGTATCTGGTAAAGACTGGCA 39755 29 96.6 32 ..........T.................. AAGCCTGCCGGATAAACGGACGGGCTGGTATT 39816 29 100.0 32 ............................. ACCTTGCTTACGATTACTATGGCTACTATACT 39877 29 100.0 32 ............................. GTTGGTGCATTAATGGAAGATGCATATTTAGA 39938 29 96.6 32 ............................C AAGGCTGTCAATATCACCGTTCCAACGTGGCT 39999 28 86.2 0 ..............C.......-C...T. | ========== ====== ====== ====== ============================= ================================ ================== 24 29 98.1 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : AAAGCACTATTGAGTGATAAGAAGTTTGATCAAGCTGTTTTTTATCTGATGGATAATTTGAATTTATTAAAACAATCATTAAGCGCTGATATGGATTATAGTCAATTATTTGAAAAACTGCGAAAGTTAAATAAAAAATTAAAGGTATTTCTAAGCCTTTTCATTATATGCCTAAAAAAACACGTACTATCAATCAGGGAAGGAGAGCAATTAATGCCATAATTAGCAATATTATTGGTGCTGATTGTAAAAAATTACAAAATTTGCAAGATGAACAAATCTTTCAGATGTATCTTGAAGCTAAGCTGCTAAATCAAAATTGGATGAAGCTTAACGATGATCGGGGAGTTAGTCAACGAATCAGAAAAAGAGAATCTTATTTTATTCAATTAACTTTGAATATCTAATTACATAAATTTTGAAAAGTGAGTCTTCTTAAAAGTGATTGAAAATGTTATGATTTGAATTAAGGATCATTGATATAGCGGGATTTGTTTAGT # Right flank : TACTCTTGTATCAAGGGATTTCTCTAAAAATAAAAAAATAGATAATCGATTAACTTAATCATTCTAAAAATCGTGCTTGATCTAACTTCCAAACATCGTTATACTAAAGAAAGTGTTGCATCGAGAATCCTTATTCACGATGCCCGATCAACAGAAATTTTAGCAAACCTCTTAAAGGCGACTCGCTTTTAGGAGGTTTTGTTTTTTATTGCCAAACAAAAAAGATGACAAAAATGCTGTAATCATTCACAATAGGGAACAACAAATTGTTGAATTAGAGGATTTAATTATGAAAACAGTAAAGAATATTATTATCGGCTTTGGTAAAGGCGGCAAAACGCTAGCTAAATTTTTAGCGAAAAAGGGCGAAGAAGTCCTAGTCATTGAAAAATCTAATCAAATGTATGGTGGTACTTGCATTAATATTGCTTGTCTGCCATCTAAACGCTTAATTATCGAAGCGGGTAATGGCGTGGATTTCGTAGATGCAGTTAATGGTA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 71125-71701 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYQZ01000009.1 Lactobacillus crispatus strain UMNLC9 crispatus10A4S22118, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 71125 28 100.0 33 ............................ TGGTTAAACAATGAACCAATGAAAGAACCGCCA 71186 28 100.0 33 ............................ TAATTGCGGTTGTTGGTTCATTGTATGGACTTT 71247 28 100.0 33 ............................ TAACAATTTATTTTTCTTCAAGGATGATATTTG 71308 28 100.0 33 ............................ CGTGTCCCGCGGCACCTGTTCCATGACCAAAGA 71369 28 100.0 33 ............................ CTAAATCTATCGGCTTATCTTTAACTCCAGTAT 71430 28 100.0 34 ............................ TACAAAAATGACTAGCGAACCAGTAACTTACTTA 71492 28 100.0 33 ............................ TTAAAATAATTAAAGAGGGAACTCCAAATATCG 71553 28 100.0 33 ............................ TGACAGCTCTGCTGTAGTGATCGAATCAGACAA 71614 28 89.3 32 ...........ACA.............. TCCGACGGGGTACCCCGCGGCTGTCCATCATC 71674 28 71.4 0 ...........ACA........CT.AAT | ========== ====== ====== ====== ============================ ================================== ================== 10 28 96.1 33 GTATTCTCCACGAGTGTGGAGGTGATCC # Left flank : GTTTACACCCAACACCAGAAGATGCAAGTAATGATTGTTACTCAGCACCCACAGCATATTATCGATGGAATTCAGAATCGAATGCATCGTGGAATCACTATTTTGCACGATGCTGAAGGTGCATATAGTCATATTGAAAAGACAGTTTTGATTACCATTATTGATCGATATGATATGTATGATATTCGCCAAATCGTGCAAGGAGCAGATCCGTATGCTTTCATGAGTGTTAGTGAAGTTGAAAAAGTATATGGTCGCTTCAAGGAGCAAGAAATCGTTTAATGGATAGCCCTTAAACCTTGATATATAAGGATTTATAAATGAAATTTGAATCCTAGGGGCACTTTGGGAGCAAAACTATTCAAAAAGAAGCAGAAATGCTTCTTTTTTATTTGGAGTGGCTTTTTGTAATTATGGCTTTATTATTGGTCTTTGTTAAAAGTGATTAAAAATGATATTATTTCGATTGAGAGATGTTGATATATCGTGGATCATTTAGT # Right flank : TAGCTGCTCTGAAAAATATGTTCTATAGAGTGACTGTTTTTGTATATTATTTAAAAATATTGTTGATGGTGCACGGAGATTGCGTTCACTTATATAGTGAAAAGATGCTAAGAAATCTAAAATAGAATCGAGATGAATTGGTAATCTGGTAATCGTAAGAAGGACTTAGCTACTAATCGTTGTATTCAATTTTGATAACAAATTAGTTAAAGAGCAAAAAATATGAAGAATTATAAATTTAATAAGTTTATGTAAAAACAGTGTCATTAAGTTAGGCTATTGATTTTGGTGAAAAAACAATTAAAGCATCATTTGGCTTTAGACGGCCAGATTGATGCCTTTTTGGCATATTTTTCTAAATATCATTCGCGTTACACGTAAAAGCGTGTGTTGTATATAGTGAAAGGAGGCTAAGAGAATCGGAGCTAAGAGGTGACAAATATGCCGAAAGCCCAATTGCAAAGTGCAAAAGAAAAAACCACAAATCAAAGTTCACTTCA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGAGTGTGGAGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 74430-76228 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYQZ01000009.1 Lactobacillus crispatus strain UMNLC9 crispatus10A4S22118, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 74430 29 100.0 32 ............................. ACTGTTAATAATTGGTTTTGGTAAGTAGTCTT 74491 29 96.6 32 ............................C CACATCGCAGTTACCGTTCACGATGTTGTAGT 74552 29 100.0 32 ............................. CAATCGCAAGCGGTTGATGAAAGTGCTATAAA 74613 29 100.0 32 ............................. ATGGTTCAAGGGAGCCAGACTATGAAATGCTT 74674 29 100.0 32 ............................. ATTAACGGCAAGTTGATTCGGGATAAGTATGT 74735 29 100.0 32 ............................. TACCGTCAATAATCTGGTTAATATAATTTTGT 74796 29 100.0 32 ............................. TACTTGTAATAGTTACACTCTTCAAAATGCTA 74857 29 96.6 32 ............................C TAATAATAAAGGTTTTGGCATGTGAACGATAA 74918 29 100.0 32 ............................. AAACTTCACCAGATGGGGCGAATATTCGGTAC 74979 29 96.6 32 ............................C TCGCATATGCTGTGAGAGCGGTGCAAAAAACT 75040 29 100.0 32 ............................. AATGATATCAAAGATAAAATTAAAATTGAATT 75101 29 96.6 32 ............................C AACCCCGCTCATATTAGGCCTTTGAACTTTAG 75162 29 96.6 32 ............................C AAGGCTAACTCATACCCCAAAATAACTACAAT 75223 29 100.0 32 ............................. GACTGTGTACCCGTTTTCTTGCATTTGATCTT 75284 29 100.0 32 ............................. AACTATGCGGTAGAAGGACATAAAAATATTCG 75345 29 100.0 32 ............................. AGGAATGTATATAAACCCCGATTTGAGTTCGA 75406 29 96.6 32 ............................C TTGTTAACACCACCAGCATTAAACAAAGTTGA 75467 29 96.6 32 ............................C AGCCTCAATTCTTGTGGGTCATGAATGTACTT 75528 29 96.6 32 ............................C TAGAATCATCTTGTAAATTAGGAGGTGATTCT 75589 29 100.0 33 ............................. GATAGTTGACGGAGGCTTGTGTGGTTTTGGCTA 75651 29 100.0 32 ............................. GACAGATTATACCAAGGGTCTGCACCAAGCGT 75712 29 96.6 32 ............................C AAGGCTAACTCATACCCCAAAATAACTACAAT 75773 29 100.0 32 ............................. GACTGTGTACCCGTTTTCTTGCATTTGATCTT 75834 29 96.6 32 ............................C AAGGCTAACTCATACCCCAAAATAACTACAAT 75895 29 100.0 32 ............................. AACTCAATTAATAATGAACTATTGACACCTTA 75956 29 96.6 32 ............................C AAACTAAGACTCTTTCTTTTGCCCGCATACAA 76017 29 100.0 32 ............................. CACGACTTCGTAATTGATCCAATTACGCATGA 76078 29 96.6 32 ............................C GTGTCTTCTGCACGCTTGATTTCATTAGCAAT 76139 29 100.0 32 ............................. TTGCGGATTGTCTGGGTCGCTATCGTCAATAG 76200 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 30 29 98.6 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : GATAAACCAACGCTTGAAGTTAATAATGCAGTACCTAACAAAGAAATTATTAATTTACGAAATTTCATTATAAAAACAAACCAGATAAGATCTGATTTTTGTCTCCTCTCTTAATTCACGTACACTATTGTAGCTCAGCAGTTTTACGAGAAAGTTACAATTAAATTTCGATTAATAACAAAAAGTTAGTATAGGTATATGTGAATATGCTTTTGGTTAGGCTAGTTAAAAGCGGATGATAAAGCAGTGTCATGGCTAAAGTGTTTGGGTGAAATTCTTAATTGTGAGCAAGAAAGATTGGCAGACAAATAATATTTTTGTTTATTTGTTTAGGAGGAATCATAGCAGAATGATATTATGATTCCTCTTTTTATTTGAATATTATGTCCAGCAGATATTGTCTATTTAATAAAAATCGATATACTTGGTAGTAGGATCAAAGTGATGAAAAAATGGTGTTTGCGTATTTTCATTTGGCGCTATAAAGGGATTTGTTTACT # Right flank : TTCAGTCATGAACATGATGGGAGCTGAACAAAAGTATTCTCCACGTACTTTTTAGCATCGCTCTTTACTACTTCTGTAAACGGCGCAATGACAAAGATCATTGGTCGGTAGTGTGGATTCGGTTTGTCTTGGCGCAGCTTGGTAATTGCTATAGTTGCTTCTGACATAGATTCAGATCCTTTCATTAAATTAGAGAACTAGAAAAGCCCTCACCAATAAGCCAGATGAGGGCAGAAAGTAAACCATTAAAATTAATCTTTTTTGTAAAAGTCGCTAACAAAACCAGCAGCGTTGAGGATTAAACCATTGGCCCAGTCGGGAACCTTGGTCATGAGCTGAACCATGGTGTCAAGTGACCGATTGAAAGGGGCGTCAATTACGGCTTCATCATGAATGTGCATTACGACGGGATTACCAGCTGTTTCTAAGCGACGCATAGCCCCGGCTAACAAGTCCCGACTGGTTGCTTGGACGATGTTTTCAACGAGCTTGGCCCCATA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //