Array 1 969130-968221 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXCA02000001.1 Scytonema tolypothrichoides VB-61278 scaffold_000, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 969129 37 100.0 33 ..................................... AGCCGTAAATTGTTCTACTGCTTCGCGCTTAAG 969059 37 100.0 35 ..................................... ATATCTATCTAGTTTAGGAGTTGAACCAATATTAA 968987 37 100.0 35 ..................................... CTGTACTCCGTCGAATATTCCGTGGTCGTCTCGTA 968915 37 100.0 37 ..................................... GCCCAAAAAAGTCGGACGCACGAGAGTAGAAGATATC 968841 37 100.0 35 ..................................... CGCAATCAATATGCTGGTACAGGATTCGACATCAA 968769 37 100.0 35 ..................................... AGCACAAGGTACATTCAATTGGCAAGACTGGATAC 968697 37 100.0 35 ..................................... CTGAATTATTCTAGCCAGTCTCTCTACCTGCTCAT 968625 37 100.0 36 ..................................... CGGTTTCATCAACTCAACTGTGTACAGCTACCTACC 968552 37 100.0 34 ..................................... TTAAAAAGTTAGTCTTTAAAACGGATTTTGACTC 968481 37 100.0 35 ..................................... ATTTTTGCCTTAAACAGCGGTGTTCTGGGTTGCTT 968409 37 100.0 38 ..................................... TTATAGTGTCTGTTTGTAACTGAGTTATGAAATCTCTG 968334 37 100.0 40 ..................................... GCAGCCCCTCCTATGCCAATTGTCCCTGCAATTTTCTGGG 968257 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 13 37 100.0 36 GTTGAAATTATCTATTCCCCGTTAAGGGGATTGAAAC # Left flank : CATCAGTTGAAATTATCTATTCCCCGTTAAGGGGATTGAAACCACAACAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCCCCGTTAAGGGGATTGAAACCGGAGTGATCAACTCGTTCAATGCAGCTTTTGCG # Right flank : AGATTTTGTTAAGGGTACTAAAGCTTGCTAACTCTTGAAGAAAAAGCCATCCATATCAAGAAGCTGTCCGGTATTTAGATCGCTAAAGACTGGCAGTATATGATAAAGTTCAAATTTCTTTTCTTTCATAAAGGCAATAGAATCATTATATAGTCTTTGATTTTTATACAAAGCCTTCAATGACAGTTCCATTTGAACGCCGACAACCTTGTCGAGAGATTGATTAGCCCCTTGTAGAATCTGTTCTTCAAAGCCTTGACAGTCTAATTTTAAAAACACATTGGAATTATCTAACTTATTTTCGTTCCAAAACGTATCTAACGTCTTTAATTGAATTTGGATTTTTTCTTTAATCTCAAAAGCAGGTGCGACACTTTTAGCATATTCTGTGGGTTCTAAAATAGAGCTTAAATCGGAAAAATTCGTTAAGTTTATTTGAGTCGTTCCATTTTCAGCACCCAAAGCAAAATTAAAACCTGACCACTTTGAGTCTTTCGCTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTATCTATTCCCCGTTAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.30,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA // Array 2 969846-969661 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXCA02000001.1 Scytonema tolypothrichoides VB-61278 scaffold_000, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ==================================== ================== 969845 38 100.0 35 ...................................... TTTCCAGCTTGGGTGAACTCGAAAAGCGAAATAGT 969772 38 100.0 36 ...................................... AATTATTTGGCTCACAACCGATGCACTTAAGCCCGT 969698 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ==================================== ================== 3 38 100.0 36 TGAAATTATCTATTCCCCGTTAAGGGGATTGAAACAAA # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTGAAATTATCTATTCCCCGTTAAGGGGATTGAAACAGGAGTGTAGTAGCTGTTGACCCTAATCAAGGTTGT # Right flank : AATGAACAACAGCAACCACAGTTAAAAGTCACATCAGTTGAAATTATCTATTCCCCGTTAAGGGGATTGAAACCACAACAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCCCCGTTAAGGGGATTGAAACCGG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGAAATTATCTATTCCCCGTTAAGGGGATTGAAACAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.30,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA // Array 3 970788-970464 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXCA02000001.1 Scytonema tolypothrichoides VB-61278 scaffold_000, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 970787 37 100.0 35 ..................................... ATGTGGTTGTAATGTAAGTCTGGTTAAGCTTTAGT 970715 37 100.0 35 ..................................... AAAGAATACTCATATTCGTCGTTTTTCGCATCGTA 970643 37 100.0 34 ..................................... TTCCAAAACAACAGCCATCGAGTTTGACTTAGCT 970572 37 100.0 35 ..................................... CTAATACCCATTCTGCTGGGCTATAAAACGCTGTA 970500 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 5 37 100.0 35 GTTGAAATTATCTATTCCCCGTTAAGGGGATTGAAAC # Left flank : TATCACGAATTTGAGTATCCACGAGAAGTGATGGAAGGGATTTTTCGGGCGCTAAAACCAGGTGGTAGGATTGTACTGGTTGAATATCGAGGTGAAAATCCCTTTATTCTGATTAAGGCTTTGCACAAAATGAGTCAGAGACAAGTACGAAAAGAAATGCAAGCTGTTGGTTTGGTTTGGCGGGAAACTAAGAACTTGTTACCCCAACAGCATTTGATGGTATTTGAAAAACCTTCCCTGTGAGGAGACACTGCGCGGATGGGTAGGTGTATGAAAAGTCAGGAGCAATTTTGTGACTCAAATGCTTATCAGTTCTGAGTTTGAGAGTTTTTTCACAAAAAAGCATCCGCGCAACTTCTATAACCTTTATCAGGACTGGATTTGAGGCTATTTTGAAATTTGCACTACTTGACGTTGGATCGCTGAAATGGTACTTTTACTATGTATCCGCGCAACCGTACCTCGAAAACTAAATAGGTCATGGGTTTCATATGACCGCA # Right flank : ATTGACATATCACCACTGTATTGCTATTATTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTATCTATTCCCCGTTAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.30,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA // Array 4 1340627-1341023 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXCA02000001.1 Scytonema tolypothrichoides VB-61278 scaffold_000, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 1340627 36 100.0 38 .................................... TTCAGAAAGTAGAGTTGCGATTTAGAACAATGTAGCAA 1340701 36 100.0 40 .................................... AAGAGCAAGTTGCTCATCGGAATATTCTTTTGTCTCGCGT 1340777 36 100.0 34 .................................... CTCATCAACACAATCTCCAACAATGTCGGTAGTA 1340847 36 100.0 37 .................................... TTTATTGTTTTTTCTCTACTGTGTACGGTTGGTTAGT 1340920 36 100.0 32 .................................... CAAGGGTCCTCCGTTTCTTTAAGAAAGAAGTA 1340988 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 6 36 100.0 36 CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC # Left flank : AAACCCAAGAGGAAATTTGTGACTCAAAAGCTTATCAGTTCTGAGTTTGGGAGTTTTTTCATAAAAACTCATCCGCGCGATGGCTACAACCTTTGCCAGGAAATGGTTTGAGGCTGTTTCTTTCACAAAAAAATTGCGACGGACTGAGTTGTCTTCTATGAAGTATTAATTTTTACAACTTAAGGTGTTGACGATTGTTATATATGATATTTTTGATGTCAGAAAGTGACGGACAAAAATCAAAATCACCAAAAACAGAGCCAAAGTATTATGCAATCTAGGTTTTAGGATAAATGAAGGAGGTTTTGTAACATGGTCATCGACACACTAAGCCAAATCGCTGAAAGCCTATATTTTTCGTTGGAGTGTGTCGATTCCTTGCTGGGCAAGGGTTTGAGGTGCTTGTTTTGCATGATTTTGAAGAACAAATATCATGTTTTTCTGGAGTGTGTCGATTTTGGCGCTGAAACCCTTACTGGGTAAAGGCTCCTGAACGAACT # Right flank : CAGTGCGGACTGCCAGTCAAACATATTGTTGGCGGCGGAATTCCCTACCGATTGGGTTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 5 1343467-1343789 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXCA02000001.1 Scytonema tolypothrichoides VB-61278 scaffold_000, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 1343467 36 100.0 36 .................................... TCATGGAAGCGGACTTGTCAAAAAGGAATGAAACTT 1343539 36 100.0 34 .................................... CCTAAAGATGCCGTTCTAGGTCTTATGGCCACTT 1343609 36 97.2 35 ...............G.................... ATGACATAGTCATAAGAACTTAATTTTTCCATACA 1343680 36 100.0 38 .................................... ATTTTTTTATAGTTTCCAGAGAAAAAATTAGACTTTAG 1343754 36 88.9 0 ............................ACT....G | ========== ====== ====== ====== ==================================== ====================================== ================== 5 36 97.2 36 CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GTGCATGCACTTTCATATTGCTTGGTAACTAGTAAAGCAGGGCGGAAATAAACAGACCATTTAAAATAGGTAAAAAGCTTGTAGCATAAGAGTTCTTTCTTTTTACTTTTTACTTTTTACTTTTGCCTTGTTGTACTAGGTCAACATAAAAAACATAAAATACGATTCTTGCGATTGCTTCGCTTTGCCCGCCTTATATCCCGACACCAAGCCAAGGGCTATGGTGCGGGGCGAGGGCGCGAAGAAGCTAAATTCCCAGTCTTTGATAAACCTGCTCTAAATGTTTTAAATGCTGCTGTGAATCAAAACACTCCTCAATTTCTGCGGCTGATAACTGTTGGGTAACGCGAGAGTCTTTGACTATCAATTCATGAAAATTACCGTCTGGTTTGTTCCAAGCTGTGTGAGCGTTTTGTTGGACAATTGCGTAAGCTTCTTCACGTGTTTTTTGTAAGTTACGAATTTCGACAGCGAAGCGTTCTATAGATGCGGCGAGGAGG # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 534701-535469 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXCA02000019.1 Scytonema tolypothrichoides VB-61278 scaffold_003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 534701 36 100.0 37 .................................... ATTCTGTAATCTGCTTGTGTGTATCGTGATCCCAATC 534774 36 100.0 35 .................................... CCTGTTATTTGCCAAGTCTACCGTTGACTTTACAT 534845 36 100.0 34 .................................... CACAGGAAAAAGTTATGGAAAAAAGTTAGTTGGT 534915 36 100.0 38 .................................... TTTTTTGAGGTCATTGATCTGATTCTGGTCCATTTCAC 534989 36 100.0 38 .................................... CTCTAGCATCGAATTTAATACCGAAGAAATCACAATGT 535063 36 100.0 39 .................................... AAAGAGTATCTCCATCAAATGCTGCCTCTCTCAAAACAG 535138 36 100.0 35 .................................... AACTGATTCGCCTCCCTTTTCTGTCTTTTCTTCAA 535209 36 100.0 42 .................................... ACTTTAATTTCAAATTTAGTTTCAAACGCATTTTCAGGAAGT 535287 36 100.0 36 .................................... TTCAACTTATTTTAGACTTAGGAGATACCCATGAAA 535359 36 100.0 39 .................................... TAGAAGATGTAGGCGATATCCTCCTCAACTAGATAGGGC 535434 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 11 36 100.0 37 CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC # Left flank : GTCAAGCTGATTGTATACGACCCAGTGGATGAGGTAATAGTCAAATGGAAAAATTAGAATTTTATCGTCAGTGTATCCAAGAACTCTTGAGAGAATACAGCAAAAGTACACCGAGTAATGACGAAATTGAGGTGCAAACAATTTTTGATACAGAACAAGATCATTATCAAATTGTTGATTTAGGATGGGACAAACATCGCCGCATCTACTATTGCGTCATGCATTTGGACATTAAAGACGGTAAAATCTGGATTCAACGCAACCAGACTGATAAGTTGATTGCTGATGAATTGGTAGCAATGGGTGTGTTAAAGAATGATATCGTGTTGGGTTTACAGCCTGTGTATGTAAGGGAGTATACGGGGTATAGTGTGTCGTAGGCGTAATCTATAAAAGGTATTATGCTGATTCTCGCGATGTATCAGTAGTGTATTTGTGTGCTTCTGCATAGATTAGTTGGAAACTTCACAGTTGGTTGTCAGAAAAAGAAGTTGATTTAA # Right flank : CTTATTACTCAAGGCGATCGCACTAACCAAATCACTCACCAACAGCACCTTCTGGAAAAATCCGACTCAAGTCCAATAAAGCATCTTCAAACCCAGGAATTGACACCGACTGATTCGCCAAAGAAATCTGCTTACTCAAATAATTAAACTCACCTTGAATATTTTGATAAGGCTGACTGTAACGCTCTAATTGACGAGCTTGCAAATTCACAATCCAGTAATCAGAAATTCCCGCTTCTGCGTACAGTATTAGTTTCGTTGTTTGGTCATAAGTTAATGTGGAATCGGAAATTTCAATAACAAGTAAAATGTCTTCGGGATAGGGATGGTGAGGAAGATAATCTTCATCTGTTCCTCTTGCAATAACGACATCCGGCTCAGGTTCACTTTGATTGGAAAGGATGATAGGATCTTGTCCACGGATAACTGCTTGGTCGCCTAAAAGCCGATTCAATTGACGGTAAAGTCGGGTTGTACAAAATATATGAGGTGTTCCCTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 451637-451382 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXCA02000023.1 Scytonema tolypothrichoides VB-61278 scaffold_005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 451636 37 97.3 35 ....................................G CGGCAAACTTCAGGACTGGTAAAACTATATTAAGT 451564 37 100.0 36 ..................................... TTTATGGTGTTTCAAACCGTAAGTTTGCAGCTCCTG 451491 37 100.0 36 ..................................... CTGAGGCTTGCATCATCAAACATTTTCACCAACATA 451418 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 4 37 99.3 36 CTTTCCACTAACTCTTCTCCGAAAGGAGATGGAAACA # Left flank : AAGTCTTGAATTATAATTTGCACTCTTTGAAGCGATTATTTAAGAGGTAGTTATTATGGCGATTGCCTACGGCAGAGCTACTAGCGCCGAAGGGCGCGCTGAGTCCCAAGGGGACACGCTACGCGAACGCAAACGCTTAACGCCAACACAACCCTCGTCAACGTGATCCGATTCAACACTAATGCTTCTGTGCCAGTAGGCAACTTGTCTGGCTTTGTGGAGTTGATTGAAAAATGTTGAAACAAAACCACGTACTTTGTAAAAAACTTGACAATCATAAGTGACATACTCTATTTTTAAGACAGTGTGTTGAGTCCATCGACGCATCTCCTCCGATCCTTGAAAACCGCATAACTTCGTTGAGATGCGTCGATTGCTTGCCCAGTAAGCTTTTTAGACGCCAAAATTAATTTATTCTGGATAAAGTTTAATCGTTTCCTAGAGATGCGTCGATTTGGGGGTCTCAAACCCTCTCCCAGTAAGGGTTCTAGAAGTGAACT # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCACTAACTCTTCTCCGAAAGGAGATGGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.30,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 476129-476299 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXCA02000022.1 Scytonema tolypothrichoides VB-61278 scaffold_004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ============================================= ================== 476129 27 100.0 45 ........................... GGGGGCTTTTCTTCACTCTTCACTCTAGTAAAATGTTTCAATCCC 476201 27 100.0 45 ........................... AAAAAAATATAGGATGTAAATAGTCAAGCTGCTTGTTTCAATCCC 476273 27 96.3 0 ..........................N | ========== ====== ====== ====== =========================== ============================================= ================== 3 27 98.8 46 TAATAGGGAGAAAGAGAAATTTCAACC # Left flank : CTCACGTTCCAAATCCAAGATTTTGGTATTGGTATCCCCATCAAAGACCAACAACTCTTGTTTGAAACTTTTCATCGTGCCAGCAATGTGGGTAGTATTCCAGGAACGGGGCTAGGGCTATCGATAGTCAAAAAGTGTGTAGAACTGCATCAAGGTCAGATCTACTTAGAAAGCCAAGTGGGAGTTGGGACAACATTTACAGTCAAGCTTTCATTGAACCATCAAAGTCCACAGTCCTTAGAACTGATTGAAAGTGACTCAGATTTACAAAGTTTTAACCACAAATCTCATCGGCTTTCTGCGGGAAAGAATGCGTAAGTAACTGTAAAACAATATATTCAAGAACAATCTGGCGGGAGGTTGTCAAATAAGGGTTCGATGCCCCCTTATTTGACGCAGCTATTCATCCCCACCGCATGGCGGATGGGGAATTCCGCCGAACTGCGTTAACATCAAAGTATTTTGAGTGATCGCCTTAAACTATAACTAGCAACTTGGGT # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 2.61 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TAATAGGGAGAAAGAGAAATTTCAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 2 478894-478499 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXCA02000022.1 Scytonema tolypothrichoides VB-61278 scaffold_004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 478893 37 100.0 36 ..................................... TTGATTCTCAAACCTAGAACGTAACTTCTGTATTGC 478820 37 100.0 34 ..................................... TTATTCGTGGGTATTTCCGATTCACCAACAGATA 478749 37 100.0 34 ..................................... AAGCAACTCTATCGCTTCAGACTCAGAGTTCAAA 478678 37 100.0 34 ..................................... CAAGTGATGAACCTTCAAAATTTGCAACAATAGC 478607 37 100.0 35 ..................................... CACTGGGGTGAAAAGCCATCACTTTAGGCTTTGAC 478535 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 6 37 100.0 35 GTTGAAATTTCTCTTTCTCCCTATTAGGGATTGAAAC # Left flank : GAGAAGATAGTGGTTTAGCGCTGATTTTGTTAGAACATTTAGGCTTGCAATTGCCAATGTTATTTAAACGTTTTGTGAAATTGGGCGAACAGATTTTAGTGAAAGCCTGTCATGCTGATCCACTTAGAGATGTGATTCAGTTTCAAGAAATTATTTATCAAGAAGCGCAACCTACGGCGAATTCTATGTAGTTCTGTGCTGTGTGGCTGGTGTTTTGGTCAAAGATAAACGTGTGCTTAATAACCTCGTGATAACATGATTTTCTGAACCGATGGCGCGGATGGGTAGGTGTAGAAAAATGGGTTTAGAAAAAAATGCTTGGATTGCTTACACTACAAGGATTTTGGAGAATATTCGATGATAACCCATCCGCGCTCCTTGCCTATACTTGATTTTAGCGATTTGCCGTCAATTAATTTACTTTTTTTTCTGCTATCATTAGTTCATCCGCGCTTTAGAACCTTGAAAACTTTATATGGTGCAGTTTTCTGAGTGCCGCA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCTCTTTCTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 3 518775-518955 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXCA02000022.1 Scytonema tolypothrichoides VB-61278 scaffold_004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 518775 37 100.0 35 ..................................... GTAGTAAACTGAGCTTTGATCTTTAGTGGAAAAGG 518847 37 100.0 34 ..................................... TTTGATTGAGAAAAGTGTGGTTAAGGCGATCGCT 518918 37 83.8 0 ......................CCCCT.A........ | G [518942] ========== ====== ====== ====== ===================================== =================================== ================== 3 37 94.6 34 GTTGAAATTTCTCTTACTCCCTATTAGGGATTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CAGGCGATTGCTATGGAAAGCTTTTCTTCTCCTGTCGCAGACGCTGCGCGCCGAGAGTTCCTGTCTGCAGGACTTACGCTAATGCTCAACTACGACAGCGTTAAAATAAACCCATAAATCGTAACGCCATACCCACTCGCCATGTCCCTAGCTAAGGAATTAGACACTCCTCAAGATATCCCAGAAGATGTTATCCTTCCTCCAGGTGATTTATACAGCGACGAGCCTCCCTTGGAAACCGAACTACATCTACGGCAAATAATCCTACTTTTTAAATGCCTGGAATGGTTGTGGCGAGATAGAACAGATTTTTACGCTGCTGGCAATCTTACTATTTATTACAGCCTCAGCAAACGCAAATCAGAAGATTTCCGGGGACCAGATTTTTTTGTCGTGTTGGACACCGAACGCAAAACTCGTAAAAGTTGGGTAGTTTGGGAAGAAGAGGGCAAATATCCGAATGTAATTCTAGAAATTCTTTCTGAATCAACTGCTAATAC # Questionable array : NO Score: 8.09 # Score Detail : 1:0, 2:3, 3:3, 4:0.73, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCTCTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 221433-222425 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXCA02000027.1 Scytonema tolypothrichoides VB-61278 scaffold_007, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 221433 36 100.0 39 .................................... ATTCCAGAGTTTTTAGCCTTTTGTAGAAGGCCACTTCGA 221508 36 100.0 39 .................................... AAGATGGTTCGTTCCACGGTTATTGACATACTTATTTCC 221583 36 100.0 36 .................................... TTTGGGAAACCTCCATTGAAGTTTCCGTAGTCTCCC 221655 36 100.0 37 .................................... GATTGTACTTGATCTTTTAGTGTCAGTGATCTGTTGA 221728 36 100.0 41 .................................... TGGTAGTGTTACTGATTTGCCAACCGATAGCTCCTGTACCA 221805 36 100.0 34 .................................... CAGAGTGAGCCACTTTTGTTGGCACCTCGTTTGA 221875 36 100.0 38 .................................... TTCACATGTTTAGAGTTGGAAATCCAGCTGTCCTAATT 221949 36 100.0 39 .................................... TTTTCCATGGTTGCCGCTACGGTAGCAAGCGCCACCGTA 222024 36 100.0 38 .................................... TTTTTAGTTATTCCTCTGTCTGTTTTCTAAAAATGCAC 222098 36 100.0 38 .................................... TTCATCTTGGAATCTCCTATTTGAAAATCGAATTAGCT 222172 36 100.0 35 .................................... TAGAAATGTATTAGGTGTGAAACTGACAGTTTTTC 222243 36 100.0 35 .................................... ACCTCGTCATCCGTGCAATCCTCGACCCGATTCTC 222314 36 97.2 40 ....................G............... AAATCCAGTTCTATCATCCATTCATGGTGTATTACCAAAA 222390 36 94.4 0 ............CC...................... | ========== ====== ====== ====== ==================================== ========================================= ================== 14 36 99.4 38 CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC # Left flank : TTTTCTCGAAAATCTATAATGAATTTAGGAGTGTGTCGATTTGGCGGCTGAAATCCTTACTGGATAAGGGCTGCTAGACGAACTCCCTACCGATTGGGTTAAATCGGATTAGTTGGAAACGCAAGGGCAACACCCAATCCTGAACAAATTGAAATTCCCTACCGATTGGGTTAAATCGGATTAGTTGGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTCTAATCTTCTATCTCTAAGAGA # Right flank : CTTAAGAACTGTGGAGATTCCCGATTTCTTCCAAGAAGTCGGGAATTTCAATTGTTACCCTCACATACCTCACGCTTCGCTTTCCATTACGAATGGGAACAAGATATTTATGAGTTTTGCGAGGACATGTGAAATGATTTTAAGAACTTGCCGAAACCGTGTAGAAGCGTATACAAATACTGAATTGCTACATTTAGCGGACGATGGCTACGACCAAGATCGATGGGAATACCACGAGTCAAAAGGTCCTAGCAAAGCGTTTGAGGAGAGCAAACGCAATTACGAACGTGAAATTATTGCTAGAGCAATGGCAGGTCTGTAAGTTATGAATGATACTAAACTTGTCATCGCTGCTTTGCTGGTTTCCCTGGGTGTAGCAATTTTCCTCCCGTTCCTCTGGCGGGTGACACCACAAATTCATTATCAAATCAACCTAGAAATTGAGAACCGCTAATTCGTGTTATGGATTCGTTCAACGAATACAGTACTCAAGGTCATAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 396974-396575 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXCA02000024.1 Scytonema tolypothrichoides VB-61278 scaffold_006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 396973 36 100.0 34 .................................... GAGATCACTTCAAGCCTTGCTGATACGATCTGCT 396903 36 100.0 38 .................................... AGAAAGTACTGACACATCCTGAATAAAACCAGCAGCAC 396829 36 100.0 37 .................................... TGGCTGTATATATTTCGGGTCAAGTAACGGCCCAAGC 396756 36 100.0 33 .................................... ACTTGATACTGTAAGTTGTATGGCTGCCTTTAT 396687 36 100.0 41 .................................... CTACTCTATGTACGCGAGCATCTCTACTACCAGCTTCTGCT 396610 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 6 36 100.0 37 CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC # Left flank : TCTAAAATGTTAGTGGTTGTTGTGTATGATATTTCTGATGATAAAAGACGCACTAAGTTATCCAACTTTCTGGAGGGTTACGGGCGAAGAGTACAGTTCTCTGTGTTTGAATGTTTTTTAAGTTTGGAGGAGATGCGGCAACTTTTTGAGAAATCGAAAAAACTTGTGAAACCATCCGAGGACAATGTCCGATTTTATTGGATTTCGGAAGACGCTGTTTCCAGAGTGTTAACGATTGGTAGTGAAGAACCCGCAGCACCCCCAAAGTATTATGTTATCTAGGTTTTAGGAGAATTCAGGAGGTTTTGTAACATCGTCATCGACACACTCCGCCAAATCGCTGAAACCCTATATTTTTCGTTGGAGTGTGTCGATTGCTTACTGGGCAAGGGTTTGAAGTTTGTCTGTTGCGCGGTTTCGCACAACATCTATAATGTTTTTCAGCAGTGTGTCGATTTGTCGCCTGAAACCCTTACTGGGTAAGGGCTGCTAGACGAACT # Right flank : CACAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [6.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 2 455617-454804 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXCA02000024.1 Scytonema tolypothrichoides VB-61278 scaffold_006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================== ================== 455616 36 94.4 34 ...........C...G.................... GGTGCATCTACTGCAAAACAACAAACTCAAGCTT 455546 36 100.0 43 .................................... CTACTCTTACAGGTACCGAAACAGGACAGAAGCAACATCAAAC 455467 36 100.0 40 .................................... TCTTGCTATCCGGCGGAACATTGGATTGACAAGGTTAAAG 455391 36 100.0 43 .................................... CTACTCTTACAGGTACCGAAACAGGACAGAAGCAACATCAAAC 455312 36 100.0 40 .................................... TCTTGCTATCCGGCGGAACATTGGATTGACAAGGTTAAAG 455236 36 100.0 40 .................................... TCGACTTATTGTTTGTAAAAAACGAGGATTTCATCATGGC 455160 36 100.0 38 .................................... ATTAACAAAGTAGTTACTTCAGTTGCTTTAGGTGGACT 455086 36 91.7 66 .................................CTT ATACACATCTAGATGTGTATAAGAGACAGGGCTATGGCTATTATACCTAGCGACGGTTGGCACTTT 454984 36 100.0 35 .................................... AAGCAGTTAAAGTGCATGAAGCGTGTATGGCTGAC 454913 36 100.0 38 .................................... ACAATCGAAGTACAAAGGAAAGTAGAAAATGTTTAATT 454839 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================================== ================== 11 36 98.7 42 GTTTCCATCCCTTTGCAGGGAAAGGGTTTTGTAAAG # Left flank : TTAACACTTAGCGATAGAGCAGTAGGCTGGAAAGCACCCAAACCTGGTATCTTGACCGTTCTAACGTAGCCCCTGGGGACTAAATCTGGCTATATCTCCAGTAACCGAACTGGTTGTCCAGTTTTGTCCACTGTTTGGTGTATAGCTACCTTTTAGTAGAAACTGGCTGGCAAAACGGTTATCGCATCTATGGCACATTATTGCATATTGATGTTATTGATAATAAACTCTGGATTCAACATGACGGTACAGAAGAAGGTATCGCTTTAGAGCTAGTAGCTGCTGGAATTCCCAAAGATAGGATTGTCCTAGGCTTTAGAACACCTGAACAACGAAAACACACAGAATTTGCGATTTCCTAGAAGAGCGATCGCTTTTAAAAGATTTTGTAAAGCAGATTTTAACAGAAGAAGAAGAATTTCTACAGCGATGTTTTCATCCCCTGGTGGGGATTTATTTGTCGAAAGTCGATATAATGGTGCGATCGACTTCTTCCAAAT # Right flank : AGTTCACTTCTAGAACCCTTACTGGGAGAGGGTTTGAGACCCCCCAATCGACGCACCTCTAGGAAACGATTAAACTTTATCAAAATTAAATTAATTTTGGCGTCTGAAAAGCTTACTGGGCAAGCCATCGACACACTCCAACGAAGTTATGCGGTTTTCAAGGATCGGACGGAGTGTGTCGATGGACTCAACACACTCTTCTAAAAATAGAATGTCTCACCTATAATTGTCAAGTTTTTGACCGACTCCACACTCAAAAGTGCAGTAGCTGCTCAGTACTCAACGCTCAGAACTGTTTTGTTGTTTTATCATGGTTTGATAAAACAGTGAACAGTGAACAGTGAGTCCAGTGCTGCAGGAGGGTTTCCCTCCGTAGGCATCTGGCGAACCCGAAGGGTGAACAGTGAACAAGGGGTGGATCAGTCCGTTTCCTACCTGATAACTGGTAACTGATAACTGGTAACTGTAAAAGATGAATTACCATTTGCACCTAGTTAAAA # Questionable array : NO Score: 3.00 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.19, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCTTTGCAGGGAAAGGGTTTTGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.30,-7.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [3-2] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA //