Array 1 954034-955220 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKPG01000002.1 Salmonella enterica subsp. enterica serovar Hadar strain NCTC 9877 contig01_PIR00534, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 954034 29 100.0 32 ............................. AACTTAACTCCAGCATTCTGGCAATTGTTGCG 954095 29 100.0 32 ............................. GCGACATCAAAATCTATTTTTCATTCTATCTG 954156 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 954217 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 954278 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 954339 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 954400 29 100.0 32 ............................. AATGGGATGTTCTCGATAATGGCGACGACGAA 954461 29 100.0 32 ............................. CGGTCATTTTAAAGAATCCCGTTAAACAACAC 954522 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 954583 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 954644 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 954705 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 954766 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 954827 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 954888 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 954949 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 955010 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 955071 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 955132 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 955193 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTGATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 971902-973641 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKPG01000002.1 Salmonella enterica subsp. enterica serovar Hadar strain NCTC 9877 contig01_PIR00534, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 971902 29 100.0 32 ............................. CGACGCTTCCATCGTCTGGCATTCCTGTTCGT 971963 29 100.0 32 ............................. CCCGCGTATTAACAACGACGAGCAGGGCGTGC 972024 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 972085 29 100.0 32 ............................. CGCCCCCCGCATACAGCGAGAGACGGGCCATG 972146 29 100.0 32 ............................. CGCCGGGCGCGGGAGTCCCGGGCGATCCTCCC 972207 29 100.0 32 ............................. GCCCGAAATCAACTTGCAACATTTCAGTTGGC 972268 29 100.0 32 ............................. CATATGATTGACGACAATGAATTTTTTTTCAA 972329 29 100.0 32 ............................. ATAGTTCATCTCTGTTCTCCAGCGGTTTCTAT 972390 29 100.0 32 ............................. ACGGCATTATCACGGCTATTTCTCTGGAAATG 972451 29 100.0 32 ............................. GACAGGACTTACGACCGGCTGGACTACGCATC 972512 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 972573 29 100.0 32 ............................. GCTGAGATAATTGCCGATCATCTTGAAGACAT 972634 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 972695 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 972756 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 972817 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 972878 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 972939 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 973001 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 973063 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 973124 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 973185 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 973246 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 973307 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 973368 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 973429 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 973490 29 96.6 32 ............T................ AAGCCATTGACGCAACGGAAAACGCCAATGCT 973551 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 973612 29 100.0 0 ............................. | A [973639] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //