Array 1 596195-597767 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQU010000002.1 Anabaena sphaerica FACHB-251 contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 596195 37 100.0 37 ..................................... TTGAAAGCAATACCACTATGCTATTTAATTGTTATTG 596269 37 100.0 34 ..................................... ATGATAAATGCCTAGAATGAAAGTTACCGTTCTC 596340 37 100.0 36 ..................................... AACAGGCAGATGATCCGTCCTTGCTGGGATGATATT 596413 37 100.0 33 ..................................... CCGAAGGATTATTCTCCCGGATCTCCTTTGCCT 596483 37 100.0 41 ..................................... AAATTACAAAAGGTATAGACAAAATGGCTACTTTGCTAAAA 596561 37 100.0 39 ..................................... TTTTAATGAGAGATTTGATGCGGTAACTCACAGACCACC 596637 37 100.0 32 ..................................... GAAGAATTTTGTATGGTAATTCGGCTTGATAC 596706 37 100.0 36 ..................................... GTTTTGCCTGAGCCTGAAGGAGATTTACCTGATGAT 596779 37 100.0 35 ..................................... CGATTAAAACTTTGCGCCATCATAATATTCATCTC 596851 37 100.0 35 ..................................... GCATTGGCGCTTCGTTTGCAAACTTTCCACCTGTG 596923 37 100.0 33 ..................................... TCAACGACTCTTTAGGATTTCGCAAAAGGAAAA 596993 37 100.0 35 ..................................... GATTAATAATTAAATCTGATTGATATTTTAAAGGC 597065 37 100.0 39 ..................................... TTTTCCTAAGCCTTAAACGTGAAAATTTAGGGCTTAGGA 597141 37 100.0 35 ..................................... CCGGCTGGCACTTCTGCTTCTGTTTCAAATAAATC 597213 37 100.0 32 ..................................... TTATTTGTATCTCTCATGCTGCCTCACTAACT 597282 37 100.0 38 ..................................... ATCAGTGGTATAATTGCGACACAAACCTTCAGCATCAC 597357 37 100.0 41 ..................................... TCATTGCCGGACGTGAACCGGGGGAAAGGGAGGAAAGATAG 597435 37 100.0 36 ..................................... CTCGTGGCGGTATCACTACGCTCGCTTACAATCCCA 597508 37 100.0 36 ..................................... CACAACGGGGGAGAAACCGACGACGGCAACCACACC 597581 37 100.0 39 ..................................... AACAGAAAAACTTTTACCTTGCAGTGAAAAGCATGGAAA 597657 37 100.0 37 ..................................... TCTACTCAATGCGAACAAGGCACTTTCCCTGTAAGTC 597731 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 22 37 100.0 36 GTTGAAATTTCACATAATCCCTATGAGGGATTGAAAC # Left flank : ATGAATGTTGTTGTTTCTTATGATATTTCTGAGGATAAGCGACGGACTAAAATCCATAATATCCTCAAGTCTTATGGTCAATGGGTGCAGTATAGTATTTTTGAGTGTGAGTTGACTGATACTCAATATGCTAAGTTGCGATCGCGTCTCAATAAGCTAATCAAAGCTGATACTGATAGCATCCGTTTTTACTTCCTCTGCGCTTGCTGTTTTGGTAAAGTGGAAAGAATTGGTGGTGAACAACCCCGCGACCACACTATTTTCTTCGCTTGATGCGCGAGGGGGTGGGTGTAAAAAATCCGGTTTCTCAAAAAACCCCTGAAACCATTTCTACATAAGGCTTTGCTCGCTTTTTTATCACTCGACCCCTCGCGCACCTTACACAGCAAGGCTTTCAGCGTTTTTCACTCTTGACACGATTCCTGAAATCGACTATGATCAGATCGCTCGCGCAACTGAACCTTGAAAACTATATATATCCAGGCTTTCAGACTCCCGCA # Right flank : CTTCAAAATACCAGATCCCCGACTTCTAACATCAATATCAGAATTTATTTACAAGATAAAAAAGAAGTCGGGGATCTTAACGAATTACGAATTAAATTAACTTCATTTCCTGTAAACCTTGAAGTAAGCGTTTAGCCTCTTGAGGATTATCTTGTTCATGGAGAGCGATCGCACATTTAAAAGCAGCCAAACTATTTTCTACATCACCAATTTTCAACAACACCACCCCCAAATTTTGATAAGCATCCGCATAATTAGGATTTAAAAATATAGCGCAATTATAAGCCTCAACCGCCTCAACAAACAAACCCATAGCTTTACATACCATCCCCAAATTATAATACCCAGTCACAAAACTCTCATCAATTTTCAAAGCAGTTTCATAAGCATTTTTCGCCCCTTGCAAATCCCCCGTAGCTTTCAACAAATTACCCAAATTATTATATCCTCCCAACTTCAACAGAGGATAAATTGGTAACTTTAGCGCCGCTTGATAATGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCACATAATCCCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 1 588863-589362 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQU010000001.1 Anabaena sphaerica FACHB-251 contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================ ================== 588863 36 100.0 43 .................................... AATTAGCTGAGTCGATGCCTAACGAACACTTCGCACAATTCCC 588942 36 100.0 40 .................................... TCAGAACCATTAAACTACACCGATTGGTTGGACGTTACGG 589018 36 100.0 38 .................................... CTGAACTTTTTCTTCAACCGTGAGGCTATACTTGGTGC 589092 36 94.4 38 ...............G..C................. CCTATTGATGGGCAAATTGACAACTTTACAGAGTTATT 589166 36 94.4 48 ....T................C.............. TTCAATCGCCGTACACAATACATTTACCCGCATCTTCTACATCAAGCC 589250 36 97.2 41 .....................C.............. TGGCATTGGGTTTTCAATACAACAAACTTCGAGGATCTACC 589327 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================ ================== 7 36 98.0 42 GTTTCCATTAATTCCACTTCCTATAAAGGAAGCGAC # Left flank : GGCAAAAAATGGTTTACAGCAAGGTGTGAATAATTTGCAAGTTTACGTGATGTGTGAGTTACCAAGTAATGTGATTTTAGCGGAAGAATTTGCTCAGATATTTGATGGTTTTTCTATCGGTTCTAATGATTTGACTCAGCTAACTTTGGGGATAGATAGAGATTCGGCTTTGGTAGCGCATTTGTTTGATGAACGCAGCCAAGGTGTGAAACAAATGGTGAAAATGGCCATTGCGGGAGCGAAAAAACACAATCGTAAAATCGGCATTTGTGGACAAGCACCTAGTGACTACCCGGAATTTGTGCAGTTTTTGGTAGAGGAGGGAATTGATAGTATTAGTTTAAATCCTGATTCTGTTTTACAAACTATGTTGTCAGTAGCAAAGTGTGAAGATTCTGTTTAAATATCCCCGTTTTCTGAGGATAATTTTGCTGTTAATTAACTAATTAAATATAAAATTCGGGGATCTAGGTAAGGTTAAAGATCCCCGATTTTTTCAT # Right flank : CCCCTCTAGTATAAACCCTTGCTGTGCCTAGTGTCTAGAGGCGATTTCCGATAGCGAAGCGTGGCGTTAGCCATAGGTCACTGAAAACAGGACAATTTTCAGCCAAAAACCACCAACTAAAACGCCTGAAACCCTTACACAGAGACAGACCGAAGTTCACAACGAAAGAATCAGCATTTGAGTCTTGTTGGGCTGACCCTCGGAAAAAATCAAAACTAATACAAAAACCTGTCATATCCTCCTGACTCCTGACTCCTGAATTCTTACATTTGTAGATTAGTTAATTGAATTTGCTAATTGTTGCAATTTTTCCTCCAATTGATTTTCTATAGGTTGTTCTGGGGAAAGTGCAAATAACTTTAATGCTTTCAAAAATGGTGTTTTCACGTTTTCTACATAAGCTTTATGAGCTTCATTAATTGACGGTTCAAGTTGATTATTTGGGTGTTTAGTTTGATCAGTTGAGTGTTCAGGTTGATTATTTGAGTGTTGATCTTGAT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTAATTCCACTTCCTATAAAGGAAGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 2 601670-599683 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQU010000001.1 Anabaena sphaerica FACHB-251 contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 601669 36 100.0 39 .................................... TACTCCTAATCCGCCAGTAGCCACAGTGAATGCAGTAGC 601594 36 100.0 45 .................................... TTGAATTATCTTTGACAGCTTGATGGATTTACTAGCACACACTTT 601513 36 100.0 38 .................................... ATTACTACACTGTCCTCATTGTACTCAACTAGAGAGAT 601439 36 100.0 36 .................................... GTTGTTGTAGTTCAAGTTCAGATCGGCGGTTTGATA 601367 36 100.0 38 .................................... AGTACAGGAATAGTAGCACCACTATCAAATAGTGCGTT 601293 36 100.0 37 .................................... AACTTACTATATGAATCTAGTTGTTTAGGTGTTAACT 601220 36 100.0 39 .................................... ATATCTATCTGTTGATACAACAAGTTCTCTTATTTCACT 601145 36 100.0 35 .................................... ACTCAAGACTTTGGTCCATTGTGCCTCATCTTCTA 601074 36 100.0 40 .................................... GACATGTGGGTTAACTCTTCCCATTTCTGTGACGTACTTT 600998 36 100.0 36 .................................... AAGCTAAACCTGAACTACAAATCCTTGCAGCTATGA 600926 36 100.0 34 .................................... GAGTGGTTGAAATACCCCAAGTTATCCCAGCTGT 600856 36 100.0 36 .................................... TTAAACCTAGAGAAACTTTAGGTTGTGTTACTCGTA 600784 36 100.0 40 .................................... GGCATAAAGTCTAGTTCAGGAAAGCTGATAAGTTCTCTGA 600708 36 100.0 39 .................................... AATATGGAGCATTGGTTCAGCCTTGAGGGCTTCCAATAC 600633 36 100.0 40 .................................... GATTCTAGTTTGCTGATAGGACAATCTGCGATCGCCTGTT 600557 36 100.0 42 .................................... TTGCAGGTCAGGTGGTTAGTGTCTAACTCCACAGTGTACAAC 600479 36 100.0 35 .................................... TTGATTCTTCCGATAGCAGCATGAGTTAAAAGAAG 600408 36 100.0 35 .................................... CTTTTCTGATTCTTCCACCGCTTCATTCTCATGAG 600337 36 100.0 40 .................................... CTAGACGAAACTTCTGCTTGAGTTCATTGATATCATCTGC 600261 36 100.0 42 .................................... ATGACTGGTTTAGTCATACATACCTCCTCTTTCTTAATAAAC 600183 36 100.0 43 .................................... ATCTTCTAATAGCCTCTATTGCGGCTGCTTTCATCTCCCACTG 600104 36 100.0 41 .................................... AAGCATCCTGAGAACGGACCAATCATATCTCCGCAAGCACT 600027 36 100.0 43 .................................... GGATATACCCCGTCAACGTAGGCTATATATGGCTGCTGTTCCA 599948 36 100.0 45 .................................... GGCATTAACACCAGCTCCTATTACCACTGCGTCTTTAAACAGACA 599867 36 100.0 42 .................................... CTATCATCCCCTTGCTGTGAGTTGGCGCACAAGTCAGAACGT 599789 36 100.0 35 .................................... CTATCCTTCTGAAAGTAGAGATTCTCAATTGTTTT 599718 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================= ================== 27 36 100.0 39 GTCGCTTCCTTTATAGGAAGTGGAATTAATGGAAAC # Left flank : TTGTTTTGATTTGAGTTGGTTGCAAGAAACGGACAATTGTATCTCCTGCTGTGGCATTTATAAAACTAGCGAGAGTGACTAAAAGTGTGTTAATAATTACTGCTGCTAGTCCTAATGGTGCGATTAACAAAATGATGAGTGTAATTCCACCATTGAGTAAGGCAACTGATAAGTTTCGCACTAAGGCTGCACGATGGGAAATATACATAATTTACTTGGGATTTGAGTTGATGCTGTTTTTTTAAGTTAATCGGTATAGGAAGTTTATACAAGTGGTTTCATGCGAATGACGATTTTTTTTATTGGTGTTGATTTTTTTGCGGCCGGGTACGCTGGGGGGTGGAAATGCTGATTGTTTCGTTGACCCGGCCGATGTGTTGCTGTGTAAGGATTTTACGGCTTTTGGCTGTGTGGCTTTGGGCTGAAAATGGTCTTGTGTTCATACCCCGTCGCAAATGGCATCTAGACATTAGTCGCTGTCTGGGTTTATACTATGAGGG # Right flank : ATTAAAATAAATTGGGGATATTGCATCAATAAAGATTAAGATCCCCGACTTCTTCAAAAAATCTGTCTATTAAACAGATAATTAATCATAGAAGTCGGGGATCTGTGCCAAACTAATCATCAAGTAGCGTGTAATCATCTGTTGTTTAGAATATTTATCTAAGAAGTCGGGGATATTTAGTGGAAACTGATTGAGATCCCCGACTTCTCTGTGTAATCATCTGTTTTTCAGAAGATTTATCTAAGAAGTCGGGGATCTATAGGGTATTTATATTACCTATAAATATTGACAATATCCTCACCAATTTGTTTAAATTTATCAACTAATAATTGTGGTTTTACTACCTTTACACCTGCTTTAAAACCAAGAATCCAGCGTAACAATTCTATGTCATCTAAACACCATTGCGGGAGGATGACTTGAAAGCGATTAGGAAAATTTTTCTCTCCAGTTGATTTGAGAGAAAAAATAGATTTTGGTAAATTTAATTTATTGCCAGT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTTCCTTTATAGGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 99301-93297 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQU010000010.1 Anabaena sphaerica FACHB-251 contig10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ========================================================== ================== 99300 23 100.0 51 ....................... TTGATGTCTTCGTTTCCGTCCAGAATTTTCAAACAATGTTTCTAAACCACT 99226 23 100.0 49 ....................... TTTGAGTATTTGTCGTCCTCAAAATTGTAATTACCGTTTCTAAACCACT 99154 23 100.0 57 ....................... TAATCAAGATTATTGATTGCCCTAAAGTATCTATTCATCCATGGTTTCTAAACCACT 99074 23 100.0 48 ....................... ACTTGATATGCTGGCTGATACCAGTTCTCTGAATGTTTCTAAACCACT 99003 23 100.0 51 ....................... CCCCCCTTTCTTTCCTAAGAGCAGAAATAATTGTTTCGTTTCTAAACCACT 98929 23 100.0 51 ....................... ATTAGCGTCCATATATTTTGTCTATGAAAAATACAAAGTTTCTAAACCACT 98855 23 100.0 49 ....................... CCTATACCCGTACCTGTACCCGTACCTGTACCTGTGTTTCTAAACCACT 98783 23 100.0 46 ....................... TTCACTCCATCATTTACTCAAGATAGCAATTAGTTTCTAAACCACT 98714 23 100.0 51 ....................... CATTCTTAGGATCTATGTAGAATATTTTGCGGGTAGGGTTTCTAAACCACT 98640 23 100.0 49 ....................... TTTAGGAGCAAAGCCACGGCATAAAATAAAAAGTTGTTTCTAAACCACT 98568 23 100.0 49 ....................... TTGGCAAGCCATTTGCTTGATATCTTGGTAAGTAAGTTTCTAAACCACT 98496 23 100.0 57 ....................... CTATGTAGATAGATTGGTAAGTGTACTCTGGAAATCCATCAGGGTTTCTAAACCACT 98416 23 100.0 47 ....................... TTAGAACCAGAATTATTCTGGTCAACAGCATAAGTTTCTAAACCACT 98346 23 100.0 53 ....................... AGTTTATATGCTCGTCACATTTCCATTGGTGGTGGTGAAGTTTCTAAACCACT 98270 23 100.0 51 ....................... ATGACATTGCTTTGTCCAATACTGAACCCGAAGCGAGGTTTCTAAACCACT 98196 23 100.0 54 ....................... TCGTAAATCTCCTGAGCGGTCATACCGCCAAAGTTGTATTGTTTCTAAACCACT 98119 23 100.0 49 ....................... CAAAAGCCGGAGCCAAGTATTAGGTTTTGATTTACGTTTCTAAACCACT 98047 23 95.7 50 ......................T CTATTCTTCCTTCTGGCTCTGGATTTCAGATAGCTTGTTTCTAAACCACT 97974 23 100.0 51 ....................... ATTCCCCCAAAAGCACCCTCACCCATCCCAGAGAAAAGTTTCTAAACCACT 97900 23 100.0 50 ....................... CAAATAGGTTTCGCACCAATACGAGCTTTTACCTTGGTTTCTAAACCACT 97827 23 100.0 57 ....................... CTGTAACTTACCGTAGTGCCACCGGTGGTACCACTTGTCCTAAGTTTCTAAACCACT 97747 23 100.0 52 ....................... CAAGTAGCGATCGCGCGCTGCTTTAAAAACAATCCCAAGTTTCTAAACCACT 97672 23 100.0 50 ....................... TTGGGATCGGTGATTGAAGCGGCAACCGCACCACTAGTTTCTAAACCACT 97599 23 100.0 50 ....................... TTAAATAATATCCGTCTCCCATCTTCCGATCCTTGAGTTTCTAAACCACT 97526 23 100.0 49 ....................... TTCAATTAATAATAAAAATTCAGTTCAGTTAATTGGTTTCTAAACCACT 97454 23 100.0 51 ....................... AACTTTTAAGCTCCTAATCCACAATTTGAAGCCGCCAGTTTCTAAACCACT 97380 23 100.0 52 ....................... CATAATAAATGAATATTATGATGACGGAGCGTAGGAATGTTTCTAAACCACT 97305 23 100.0 50 ....................... TTTATATCTACATTCCAAAAACTCAGATATCTGCAAGTTTCTAAACCACT 97232 23 100.0 52 ....................... TAGCCGCTGCAATTGGCATTTCCTCCACTGTTTATGGCGTTTCTAAACCACT 97157 23 100.0 53 ....................... TCGAAATTAATCAGAGTGATAGCAGAAGGCAAATTAGCTGTTTCTAAACCACT 97081 23 100.0 47 ....................... AGGCGTGGTCAACAAACTTAGGCTCAAGTTGTTGTTTCTAAACCACT 97011 23 100.0 50 ....................... ATGCAACTTTTTTCATAAGCCACAACCAAGACGCTAGTTTCTAAACCACT 96938 23 100.0 50 ....................... ATTATCAGCCTTCCTGCCAAGAGCGCGAATAGTAAAGTTTCTAAACCACT 96865 23 100.0 54 ....................... GACCATTTAAAGTTCAATACTCAGGCTCAATTGCCTGGTGGTTTCTAAACCACT 96788 23 100.0 50 ....................... ACTGGTGAAGTTAAACAGCTTGGAGGAAACATCCTCGTTTCTAAACCACT 96715 23 100.0 58 ....................... CCGATAGGACGTACGACAGAGAGACCATCTTGGGGGCAAGCTAAGTTTCTAAACCACT 96634 23 100.0 51 ....................... ATTTTCGACGATTCAGCAATATTGATAGCATAACGCCGTTTCTAAACCACT 96560 23 100.0 49 ....................... GAACCAGCAGAATACCCAGAAGGAATTGAAACGATGTTTCTAAACCACT 96488 23 100.0 50 ....................... TCCACTTAGGCGGTGATTCTAAAGAATTTTGGGTTTGTTTCTAAACCACT 96415 23 100.0 53 ....................... CATAAAACGTAAAACAGATCCTCAAAAGCAGGATGATGTGTTTCTAAACCACT 96339 23 100.0 46 ....................... ACCACCGTTTTCTAGTTCTAATTGATGCCATTGTTTCTAAACCACT 96270 23 100.0 49 ....................... CAGATAGTGGTAATCCTGTAAAAATAGGTGGTGTCGTTTCTAAACCACT 96198 23 100.0 53 ....................... TTAAGGAGAAACGCCAATCATAGACCTACTGCATCAAAGGTTTCTAAACCACT 96122 23 100.0 51 ....................... TTTCCTCAAGTAAGTGAACAAAGTGTACCTACAGGGAGTTTCTAAACCACT 96048 23 100.0 49 ....................... CTCACCTGCTAAAAGGTAGCTGTGTTTCCTCTAACGTTTCTAAACCACT 95976 23 100.0 54 ....................... AGTCAAAGTCTGTCTCAACTCACTGACCGGACAATTTTTAGTTTCTAAACCACT 95899 23 100.0 50 ....................... TTTGGTAAATTATCTGGCTATACCGAAATAGGAAAAGTTTCTAAACCACT 95826 23 100.0 53 ....................... AGTTTTCAGCTTCGTGAAATTGATAGATGGGAGGATGAGGTTTCTAAACCACT 95750 23 100.0 49 ....................... GCGAAAGAAGGGAGCCTAGCAAATGACGCATATAGGTTTCTAAACCACT 95678 23 100.0 48 ....................... ATATCTGAGATGTTCCCCCCAATTTTTATCAACTGTTTCTAAACCACT 95607 23 100.0 49 ....................... TTCAGAAAAGATTAGCTGATGATAACTATGCTTTCGTTTCTAAACCACT 95535 23 100.0 48 ....................... TTGAAAAAGTATTGAGGTTGTAATACAGTCCTAGGTTTCTAAACCACT 95464 23 100.0 50 ....................... GTAATCTGTTCCAATTATAGTTATTTTTTCATTGGAGTTTCTAAACCACT 95391 23 100.0 50 ....................... ACCTGAGTATGACGTGGCATCTCTAAAATTAACCCTGTTTCTAAACCACT 95318 23 100.0 54 ....................... CTTCCTTTAATCAAGACGACAATTGATTTAATGTTTTCATGTTTCTAAACCACT 95241 23 100.0 46 ....................... TATCATAACTCCGGGTTTGCATTTGGCAAACTGTTTCTAAACCACT 95172 23 100.0 49 ....................... TGCAACTGGACCAGGAACTAAGCAGAACAACCACCGTTTCTAAACCACT 95100 23 100.0 48 ....................... GCCATCTAACCTGCGATCGCATTAACTCGTGAACGTTTCTAAACCACT 95029 23 100.0 55 ....................... TAAATAATTCTGCTGTTACTCCGGTTACACCCCCTGTAACAGTTTCTAAACCACT 94951 23 100.0 50 ....................... ATTTCGGTTTAAAACTTTATGCAAACAAGAAAAGACGTTTCTAAACCACT 94878 23 100.0 49 ....................... CAATATTTGTAGTTAAAACAATGACAATTGACCGGGTTTCTAAACCACT 94806 23 100.0 49 ....................... AACCAAGCATTAAACAGAAGTTTTTAAACTTCTCAGTTTCTAAACCACT 94734 23 100.0 56 ....................... AAGAGATAGAATTAAGGTCTATACACACTGACTCGTTAAACGGTTTCTAAACCACT 94655 23 100.0 49 ....................... AAGATAATTAATTACTGATTCTTTTGCTAGTTCATGTTTCTAAACCACT 94583 23 100.0 52 ....................... AAATTAGAAGAATTTATGATGCTCTGAGTAAGGAGAAAGTTTCTAAACCACT 94508 23 100.0 52 ....................... TTTTTCAAACAATTCTAAATCATCAGCTTTGATTGATGGTTTCTAAACCACT 94433 23 100.0 50 ....................... CATTTTACCTGACGCACAAATTAATTTTTCAAAGGGGTTTCTAAACCACT 94360 23 100.0 49 ....................... AGTCCTATATTAGGGAATTGTTATATGTCTTGAATGTTTCTAAACCACT 94288 23 100.0 52 ....................... CTGGCTAAAACGGAACCTTTTGACTGGTTAGGACTGCTGTTTCTAAACCACT 94213 23 100.0 55 ....................... CTTCCTTGAGATTGGTCAATAGTTAGCGATAAAGACGGCTGGTTTCTAAACCACT 94135 23 100.0 52 ....................... TAGACTACTTAATCCTTTAGACCCTCAACAGCAAAAGAGTTTCTAAACCACT 94060 23 100.0 49 ....................... CCATTAAGCAACCAACCAACGTCGGGAAAAGAACAGTTTCTAAACCACT 93988 23 100.0 49 ....................... TTGAGCGATCGCAACCAAGACCCCGCTAATTGTTAGTTTCTAAACCACT 93916 23 100.0 48 ....................... AACGCATTGGATGACGATAAAAACTATAGCGACGGTTTCTAAACCACT 93845 23 100.0 52 ....................... AGCTTGGTAGTATCCAAGCCGCCCTCGCGAACAAATATGTTTCTAAACCACT 93770 23 100.0 50 ....................... CAGCCGGCTGTGGATCGCCCACATCAATATGGCGAAGTTTCTAAACCACT 93697 23 100.0 52 ....................... GAAGCAGGAGTACAAGCACCATTGATGCAATCGTATTGGTTTCTAAACCACT 93622 23 100.0 57 ....................... ATTATCCGGGTCGATGGTTGATAGCTGATCAAGTTGAGCCAAGGTTTCTAAACCACT 93542 23 100.0 53 ....................... CCATAACCTTTGACAGTAGCCGCTTACTTGGCAATGTAGGTTTCTAAACCACT 93466 23 100.0 50 ....................... TACTCAGGAGGGACGCTAGGCGGTTGAATGCCAGTTGTTTCTAAACCACT 93393 23 100.0 51 ....................... GGGACGACCTTCTCCAGTTATAGTCTGCTATCTCTAGGTTTCTGATTACCT 93319 23 91.3 0 ........T.............G | ========== ====== ====== ====== ======================= ========================================================== ================== 82 23 99.8 51 AATCCCCGCAAGGGGACTGAAAC # Left flank : TTAGCGGATAAACTGCATAATGCCAGGTCTTTATTAGCAGATTGGCAACAACGGGGAGATATAGTTTGGCATAACTTTAGCTGTGGTAAGGAGAAAACTTTGTGGTTTTATCAATCATTGCTGGAGGTTTATCAACAAAATGGTTCTAATGTGATGACACAAGAATTAGAACGAGTGGTAAAGGAACTGTTTCAGTAACAGTCTGTTTAAAGTTGTAAAGTTTTGCTTAATTATTTGTAACCGAATTTATCTTGACAGGTAACACAACAAAATTTTACCCTTAAATAAGGATAATTTTTGGCAAACCGAAGCGGGGGCAAAAACCCTGGGGGGTCCGCCAAATCGCCAGAACCTTGATAATTAAATACTTTCAGCGTTTCGTTAGTTTCAGTTGGCGGTTGACCCGAAGCCTGAAATGAGGTTTTTTGAGAGGTCTGCCAAAATCGTCTCTAGATTCCGCTTCTAGACTGTGTTTCAAAGCGCCGGGTTTCTAAACCACT # Right flank : TATATTAAATCTGCTTTTTGGCGATCGCTAAATCTGACTGATAGCAAGTTACTTAATAACCCTCTTCTGTCAAAATGGGGAAATGCAATACCTGAAAGGTTTACGGGGCTTTAGTTTTGACATTTTGTCCTCAAATTTTATTTTTTAATAAGAAATAAAGCGTCAAACCTTGATGAAATCAGAGTTACAAAAGATGAATTCGATTATTGTTTTCCAAGAGTGACAGAACAGGGATAAGTAAGTCGGCGGGGAAATTTATAACTATGTAACGGAAATTTAACAATTAGCATTATTGTGAAATTTAATACGTTCTGTACTATGTTTTCTTGTTTTTCCCCTAGCATTCACCCCATTTATAACGGCATAAGCAAGGTCTAACTCGTCCTCAAACATTTGTCCCGATAGCTCATCTTTTTTCAGATGCTGCCACTCCAATTCAAAATGAATATATCACTTGCTACATCAGGCAACCATGCAGATGTTAAAAGTTCAACAATCCA # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.30, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: R [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.40,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 124722-129250 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQU010000010.1 Anabaena sphaerica FACHB-251 contig10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= =========================================================== ================== 124722 23 100.0 53 ....................... ACGCTTGCGACGGGCTTTTGCTTTTTCGGTTTGCTCATAGTTTCTAAACCACA 124798 23 100.0 50 ....................... CAACTTTTAAAACACCATTATCAAAATAAAAATTACGTTTCTAAACCACA 124871 23 100.0 50 ....................... ATGAAAATGGCAAGTTCTTCGCTGTTCTCAAAGTTGGTTTCTAAACCACA 124944 23 100.0 54 ....................... TTTTCTGGAAATATCACCAAAAAGAAAGTCTTCATTTAAGGTTTCTAAACCACA 125021 23 100.0 48 ....................... TCTACCTCTGGCGCTTGCTGCGGCTGCGGGTCTTGTTTCTAAACCACA 125092 23 100.0 54 ....................... TTGCCTTGACCATCACAAACCACTGTCCCTGATGGCATCGGTTTCTAAACCACA 125169 23 100.0 50 ....................... ATCTTATGTTAACCCAACACCGCATCACAAAGCAAGGTTTCTAAACCACA 125242 23 100.0 59 ....................... GCTTTGTATTGCTTGATCCTTCAATTACGGCTTGCACCTGTTCAGGTTTCTAAACCACA 125324 23 100.0 49 ....................... TGTCAAGAGACTTTCCAGAAAAAGTTAAAAACATTGTTTCTAAACCACA 125396 23 100.0 56 ....................... ATCTCTGGGAACAGATCACACAATTCTTTGAGTTGCACCGGGGTTTCTAAACCACA 125475 23 100.0 50 ....................... TCAAGATAATGGCGATATTTTAGCCAGAATTCCTGAGTTTCTAAACCACA 125548 23 100.0 49 ....................... CCTGTATCACCACCTGTAGCAGGAGGAGAAGCTATGTTTCTAAACCACA 125620 23 100.0 49 ....................... TTGACAAGGGTTTTGGATTTATGTTACACTATTCAGTTTCTAAACCACA 125692 23 100.0 52 ....................... CAAACTCAACTTGCTGGCATTGAAAATGCGATTAATGAGTTTCTAAACCACA 125767 23 100.0 50 ....................... CTTTCCGTCGATAACCAGATAACAAAAATCCGAACAGTTTCTAAACCACA 125840 23 100.0 54 ....................... GTACCAGTAGCAGAACGAAAAGTCACTTGCCCCAATTGAGGTTTCTAAACCACA 125917 23 100.0 50 ....................... GAGAGTTTGTACCGTCAATATAAATTGCACACCAATGTTTCTAAACCACA 125990 23 100.0 52 ....................... TTCAAATGCGAAGAGTTGGCGCTCGTTCTCCAGAGAAAGTTTCTAAACCACA 126065 23 100.0 49 ....................... AAAATCATGGAATTTCAAGTGAATCAATTAGCTCTGTTTCTAAACCACA 126137 23 100.0 52 ....................... GTTCAAGAGTGCCGAGGGAGGTCATAGCGGTTGGGGTTGTTTCTAAACCACA 126212 23 100.0 54 ....................... TTTCAGGTAGAAGCGGAAAAACAAAGCATTTGGCTAGTAGGTTTCTAAACCACA 126289 23 100.0 50 ....................... TATTTTTTTACATTAAATGTATCCGGAATATCACTGGTTTCTAAACCACA 126362 23 100.0 49 ....................... CTTTTAACTGATTTATATACGCTTCATGAACACGGGTTTCTAAACCACA 126434 23 100.0 51 ....................... TTGATTTTTTGCGGGTCGTTGGCCAATGCTTGCAGAAGTTTCTAAACCACA 126508 23 100.0 51 ....................... GCAATATAGATACTCTAATGGTGTACGCTCCGCTTTAGTTTCTAAACCACA 126582 23 100.0 49 ....................... TGTCATCAAATCAGCCGGTCTATTTAGCAGAAATTGTTTCTAAACCACA 126654 23 100.0 52 ....................... TTTAATGCACATATTACAGGTGGAAAGTTTGCAAACGAGTTTCTAAACCACA 126729 23 100.0 49 ....................... ATGCCCATCCATTGCTGGGCATCGTAGGAATAATCGTTTCTAAACCACA 126801 23 100.0 53 ....................... GCATAAATGATATATTAAAAATATCCAAATTACTTTATTGTTTCTAAACCACA 126877 23 100.0 49 ....................... ATAGCATCGAGTTCAATTAAATAGATTTTTTCCTAGTTTCTAAACCACA 126949 23 100.0 51 ....................... TTAAATTGTGGGGGCGGGCGCTTAAAGTTAATTGGAGGTTTCTAAACCACA 127023 23 100.0 52 ....................... GAAAATCCTGTAGTGTAGCCTTTTCAGAGAACGACGCGGTTTCTAAACCACA 127098 23 100.0 55 ....................... ACTTAGTTTTACTGCCCGGATCTTTATCCATTTCCGACCGAGTTTCTAAACCACA 127176 23 100.0 54 ....................... TTCCCGTTACGGTTTTTCCGTTACGGTTCGTCCGTTCCGGGTTTCTAAACCACA 127253 23 100.0 52 ....................... CAATACATTTCAATGGGTTTTGGTTAACGATCTGTAGCGTTTCTAAACCACA 127328 23 100.0 50 ....................... ATCATTGTGTTATCAAGATGGCGTAGCTCGGCTGTTGTTTCTAAACCACA 127401 23 100.0 53 ....................... AAGTCTAAACTCGAAGGCGAGCGGATAACAAAAGCTGTTGTTTCTAAACCACA 127477 23 100.0 48 ....................... GATTTTTGGAGCAACGGTTCACCAGTGGCTTATTGTTTCTAAACCACA 127548 23 100.0 49 ....................... CAAATCTGCTTAAACTCTCAACACTTTATTACTAAGTTTCTAAACCACA 127620 23 100.0 50 ....................... AATTTATATACCTAGATGTAAAGGCATAGTATTTTTGTTTCTAAACCACA 127693 23 100.0 50 ....................... ATGCTGTTTGCAGCATTACGAGTAACTTGATTAAAAGTTTCTAAACCACA 127766 23 100.0 50 ....................... TTATCTGTAAATAATTGCCTCATAGATGCGTAAAGAGTTTCTAAACCACA 127839 23 100.0 49 ....................... GCTTTATTACCTTAATATGTTGCCGGAAGCCCTAGGTTTCTAAACCACA 127911 23 100.0 49 ....................... TTGGTCTTCTGATTCAAACATACTCATTTTGCTGTGTTTCTAAACCACA 127983 23 100.0 50 ....................... ACAGATTGAGAGGGGGCAGTTCCCTGTAGGTACACTGTTTCTAAACCACA 128056 23 100.0 54 ....................... TCAAAAGTAATAAACTTATCTTTCCATGCAGGATGTAAGTGTTTCTAAACCACA 128133 23 100.0 50 ....................... ACCTCTTTTAGTTGTCCATCATTCCCTCTTACAACCGTTTCTAAACCACA 128206 23 100.0 53 ....................... TTAACTAAGTTAACCTTATCGTATTTGCCGTAATTTAAGGTTTCTAAACCACA 128282 23 100.0 54 ....................... AATCATTTACCATGCTCAAAAATGCTTTGCAGTACGCAAAGTTTCTAAACCACA 128359 23 100.0 49 ....................... ACGCCACTTCCTGAGCAGCTAACGCTGCCTGAGTCGTTTCTAAACCACA 128431 23 100.0 53 ....................... TTAACTAAGTTAACCTTATCGTATTTGCCGTAATTTAAGGTTTCTAAACCACA 128507 23 100.0 54 ....................... AATCATTTACCATGCTCAAAAATGCTTTGCAGTACGCAAAGTTTCTAAACCACA 128584 23 100.0 49 ....................... ACGCCACTTCCTGAGCAGCTAACGCTGCCTGAGTCGTTTCTAAACCACA 128656 23 100.0 53 ....................... CCAAGTTCCGCCATATCTTTCATAACAAGGCTTACCATTGTTTCTAAACCACA 128732 23 100.0 50 ....................... GCACTGCCATTACAGGCAATATTCTCAACCCATTGGGTTTCTAAACCACA 128805 23 100.0 50 ....................... GTATTCCTCCCCAGCCAGGAAGACGGGAATTACATCGTTTCTAAACCACA 128878 23 100.0 50 ....................... ATGCCCCCCACAATCTACTTACGTCACTTCCTAAAAGTTTCTAAACCACA 128951 23 100.0 53 ....................... TATTCCTCTAAAGAAGAAATGCGGGAAGTCGCAGCAGAAGTTTCTAAACCACA 129027 23 100.0 50 ....................... TCGTTTTCTGTTAAACCTTCATATAACCTTATTTGTGTTTCTAAACCACA 129100 23 100.0 49 ....................... GCGCGACTTCATAATGTTGTTGTAATAACTTTAGTGTTTCTAAACCACA 129172 23 100.0 31 ....................... GAGAGCGATCGCCAAAAATCTCTAATTACAA Deletion [129226] 129228 23 82.6 0 .......A..G.......A...G | ========== ====== ====== ====== ======================= =========================================================== ================== 62 23 99.7 51 AATCCCCGCAAGGGGACTGAAAC # Left flank : CTGATTATTTACGACTTACCAGATAGCAAAGCTGCCAACAAACGCAGGACAAGATTACATAAAATGTTGGGTGGTTACGGGAAATGGACTCAATATAGTGTGTTTGAATGTTTTTTGACTGCGGTACAGTTTGCGACACTGCAAACTAAGATGGAAAAACTGATCAAGCCTGATGAGGACTCTGTGAGAATTTATGTACTAGATGCTGGGAGTGTGAAAAAGACTATTACTTATGGTTCGGAAATTCCTAGACAAGAGCAAGCTATAATCATATAATTGATACATGAGCTTGAATTTTTGGCAAACCGAAGCGGGGGCAAAAACCCTGGGGGGTCCGCCAAATCGCCAGAACCTTGATAATTGAATACTTTGAGCGTTTCATCAGTTTCAGTTGGCAGTTGACCCGAAGCCTGAAATGAGGTTTTTTGAGAGGTCTGCCAAAATCGTCTCTAGATTCCGGTTCTAGACTGTGTTTCAAAGCGCCGGGTTTCTAAACCACA # Right flank : GAGAGTAGAATGAATAATAATCACAAAATATAGCTCAAAATAATGCCAAGAGCAGCAGCATCTAACAGACGAAAAACTCCAGTAAAAAACACCTCTTTAGAATGGCCTGAAAATACCGAATTAATTGGTTTAGTATTCGACCTAGAACCAGCTACTTCCGCATCCTTATATTCTCAATATACCATCGCTCTCCACGCTTGGTTTTTAGATCAAGTACGCCAAATTAACCCAACACTTTCTGCATATTTACATGATGGTGAATCAGAAAAACCCTTTAATATTTCTGCTTTAGAAGGTCAATTAGTAGCCACAGGTAAACAACTACAACTACAAGCAAATAACACTTATCATTGGTATGTTAACGTGTTTTCCCAACCAGTAGTACAGTTTTTAAAACAATGGTTAACCCAACTACCATCAATCATAAATTTAAGAGATGCCGAATTACAAATCAAACAAATAAATATTGTTAACCCACCAACTACTTATGAGCAAATTTT # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.32, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 72889-71481 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQU010000021.1 Anabaena sphaerica FACHB-251 contig21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 72888 37 100.0 32 ..................................... CCTGTCGGCACTTCTGCTTCTGTATCAAATAA 72819 37 100.0 33 ..................................... CTTTTGCTGCCTACATTTACTATAGTAATACAA 72749 37 100.0 35 ..................................... CTCGATACTTTTCAAACTGGTATGGGAAAGACTGA 72677 37 100.0 41 ..................................... GATAAAAATATCCGTGAGCAATGCCAACTTTTTATTTTATG 72599 37 100.0 36 ..................................... CCGCCACCAGTGCCAGTACCTGTACCTGTGCCAGTG 72526 37 100.0 33 ..................................... CTCGATGCCTTTCATACTGGTATGGGAAAGACT 72456 37 100.0 36 ..................................... GACAAAAATATCCGTGAGCAATGCCAACTTTTTATT 72383 37 100.0 33 ..................................... TGCAAGCAACCACCGAGTTGAGCGACCAAGGAG 72313 37 100.0 36 ..................................... CACAGATATTCTGATTTTTACTTTTTTACTGGTACT 72240 37 100.0 35 ..................................... CAGCATTATGCCCCTCTTGATTTTTACTGCCAATC 72168 37 100.0 33 ..................................... AAAAATATAAAAACCGCCGGGTGAAAATTTGTA 72098 37 100.0 34 ..................................... TAATTAAAAATCGATAATTTCTAAAAGGAAAAGG 72027 37 100.0 35 ..................................... GATATAAATCAATGCCAGAAAGAGAACTAATTTTA 71955 37 100.0 37 ..................................... GTGGAGGCTGCTTAGGTAATCCACCACCACCACCACC 71881 37 100.0 31 ..................................... GTTTCTTCAGTCTCCCAGTCATCATCATCTG 71813 37 100.0 35 ..................................... TCATATTCCCAGAAGGTTAAACCCATGGCTAGAAT 71741 37 100.0 43 ..................................... TTCACAATAATCAGCCAAGCTGAAAAAAAAGATTGCGAGGAAC 71661 37 100.0 33 ..................................... AATTCAGCGTTTATTTATTTAGTATCCGCAATC 71591 37 100.0 37 ..................................... AAAGAAATTATGAAAAAACTTCGCATATTTGCAAATT 71517 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 20 37 100.0 35 GTGAAAATTACTCTTTTGAGTAGTTTTGGATTGAAAC # Left flank : ATGGTTGTGTGAATGAACGGGATTTAGATTTATTTTGGCAAGCTTTGATTAAGGCTTGGGAGTTTGATCGTTCTTCGGCACGGGGTTTTATGGCTTGTCGTGGTTTGTATGTTTTTACTCATGCCAGTAAATATGGTAATGCTCCTGTTCATCAGTTATTTGATAAACTGCAAATTAAGTCTACTGTTGATGTACCCCGCAGTTTTGCTGATTATCAGGTTGACTTGGATGAGGTGTTACCTGATGGTGTGACTTTGACGAAGTTGGCTTGAAAATGCGCGGATGGGTGGGTGTTAAGTCGGAGTGATTATGACTAAGCTGGAAACTCTTGCATTGTCTAGTTTTTATTCGTTGGGTGTTATCAACCACCCGCGCACCTTACACTGTAAGGGTTTCGGCGTTTTTCGCTCTTGTGCTGTTTTCTGGAATGGGGTATTATGGCAGGGGTCGCGCAAATCGTTGTGGAAATGTCCTATTTCCAAGGGTTTGCGAGGTCGGCA # Right flank : TTGGATTGAAACGGATTGAAATAGATGAAAATTACTCCAAAAAATTGTAGGGATAATTCATGAATTATCCCTACAACCTAACGTATTAAATTGACAAATTTTAAATTACCTCACCTCTTTCAAACTATCCACTTGCTTGGTAAACATCTCCGTAAACAAACTCAATACACTTCGTTCCTCACGGACTTTAATATTAGCAGTAATGGACATCCCCGACTGTAAAGGAATGTTTCTACCTTGAGCTACTATGCTTTGTTTATCCAAACTAACTCTAGCCGGAAATCTGTAAAATTGATGAATCTGATCAGGAGGTAAAGCATCTGAACCAATATCAATTACCTGACCTTTAATATCTCCAAACTGACTAAAAGGAAAGGAATCGATTCTCACATCCACTTTCATACCTTCCTTGACAAACCCAATATCTTTATTGGTGATAAATACTTCAGCAACATATTTATCATTGGGGACAATTTGCAATAATTTTTGCGTGGCGTTGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAAAATTACTCTTTTGAGTAGTTTTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.40,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA // Array 1 346752-348112 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQU010000003.1 Anabaena sphaerica FACHB-251 contig3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 346752 37 100.0 35 ..................................... TTCCAAATCGTAAAATCAAATATTACCGAAGAAAA 346824 37 100.0 36 ..................................... CACGGCTTAATTCCTCTGCCCCATCGAACAGATAGA 346897 37 100.0 41 ..................................... TATCAAGAATATGCTGACCAATTGGAAACGACCTTTAGCGA 346975 37 100.0 40 ..................................... ATGGCAATTGCAAAGGAAGCGATAATACTCAACTGAGGGA 347052 37 100.0 34 ..................................... AGGAGAATAAATTAATCCCAATTTGCAGAGACAA 347123 37 100.0 36 ..................................... TTTTCAAATATTTCCGATATTCTTGAAGACTATAAT 347196 37 100.0 40 ..................................... AGGCTCAGGAATGGCTTGGCATTACTACAGTAGGATTTAT 347273 37 100.0 38 ..................................... CCTAAGGACTATTCTCCTGGCTCTCCTTTGCCTTGGAA 347348 37 100.0 33 ..................................... CTCAAACTTCCACCACTGCTACTGGGCCATGGA 347418 37 100.0 35 ..................................... GGATGATGTAGAGCAACAACTAAGGTTAGCAGAGG 347490 37 100.0 34 ..................................... TTTTCTGTTTTACCCAATGCGATCGCTAGTTGAG 347561 37 100.0 44 ..................................... CCAAGAAGATAGATGGTGCGTTTGCTTCTTCTATCTGAAGCAGG 347642 37 100.0 36 ..................................... TGCATTGAATTTCAATTGAGCTACTTTTATAGATCC 347715 37 100.0 37 ..................................... CACCTTGATCAGAACCTTCCTCATCTACCTCATAAAA 347789 37 100.0 35 ..................................... TTTTACCGGAACTTTGCCGGGTAGCACTGCCGGGG 347861 37 100.0 35 ..................................... TCAATCTGATGGAAGCGATCGCAGATTCTAGGCAA 347933 37 100.0 35 ..................................... CAGGATTGGTAGTAAATCCCCCGATTACCTAATCT 348005 37 100.0 34 ..................................... ACTGTAAGACTTGTTGCAGCCGCAGCCGCATTGG 348076 37 97.3 0 ...................T................. | ========== ====== ====== ====== ===================================== ============================================ ================== 19 37 99.9 37 ATTGCAATTAACAATAATCCCTATGAGGGATTGAAAC # Left flank : CACCCCACATCCCACACGAGTCCAGTATATATTGATGAGGGAGTAGTACATTATGGCGTTCCCAATATGCCAGGGGCAGTACCTTGGACATCAACTCAAGCACTTAATAACAGTACATTACCCTATGTTGTGCAGTTAGCTAATTTGGGAATTAAAGCCTTAGATGCTAACCCAGCTTTAGGTAAAGGTTTGAATGTCAAAAATCATCGTTTAGTACATCCGGCTGTACTAGAAGTTTTTCCTGACTTGGGTAAATAGGTAAGTTGCCTTGATAGCGCGAGGGGGTGGGTGTAAAAAATGGGTGTTGTCAAAAAATGGCGGTATCCCTTGATAGGCTTGACTTTGGGGCTATTCATATTTTCCAACCCCTCGCGCACCTTACACAGACTGGGTTTCAGCGTTTTTTGCTCTTGACACGATCTCTGAAATGGACTATGATGAAGTCGCTCGCGCAATCGAACCTTGAAAACTAAATATACTAAGGGTTTCAGCCTTCCGCT # Right flank : CTGAAAAGCTTTAATTATAATCCTGTAAATCCTTAAATCCTGGAAATCCTGATTCAGACAAATAAAAATAATCTATGAGGAAATTTCATTTATAATCCTGGAAATCCTTGAATCCTGGAAATCCTGATATGGCTAACGCCACGCTACGCTATCAGACAACTCAAAATAATTATATTAGTAAATGCGGGTTTTAAAGCCTCTCTCCCCCACGGGGAGAGATTTGTATCGGTGTAACATCTGACGGATACACAGATGAAAGCTGCTGTCGTTTTTTTGACATTGAGCTACTTATCAAAAAAATGGAATTGATAAATTTTTTCTGTAAAGTCATGCCGATAGCTTTTAATATAGGAAGAGGAGAGGTTGTATTGCTTTACATTCGTCTGTGCATCGGCAAACATAAAAAACGCTATATTTAGCCTTTCTCATTTGAATATATACAATACATTCTACATTTCCCTGAAACATGGGTTTTTGTGAATGTTTTAAATGATCAACAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTAACAATAATCCCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 2 354330-355094 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQU010000003.1 Anabaena sphaerica FACHB-251 contig3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ======================================= ================== 354330 38 97.4 38 T..................................... AAGGAAGGGGGGAGAGTGCCAATAATCTACGGCGTGGT 354406 38 100.0 35 ...................................... GGTCTAAGGATGATTTGAAAAATATTGATAAAACT 354479 38 97.4 39 T..................................... ATTTAATTCTGATGAATTAGCAGCAATGCTGCGATCGCT 354556 38 100.0 34 ...................................... ATTGCAAGAATCTTTTGATGGGTATGGTATTTCC 354628 38 100.0 35 ...................................... TGTGGTGAGAAGGATTGAAAAACCAAGCTTTTAAA 354701 38 100.0 34 ...................................... TGGGTAATAATCGGGCCCCCACATTCAGACTTGG 354773 38 100.0 34 ...................................... CGGGATATCGCCGTTAATATGGCTTCTGAGTTCA 354845 38 100.0 31 ...................................... TTTATCCTCTTTGGTTTCCGTAAGACTCATT 354914 38 100.0 34 ...................................... CCACCTGAGTGATCAAGATGACGCTATTCGCGAA 354986 38 100.0 33 ...................................... AACTTGATCTAAATATTGAAAGCTGCACAATAA 355057 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ======================================= ================== 11 38 99.5 35 AATTGCAATTTCCTTTACTCCCTATTAGGGATTGAAAC # Left flank : TAAACCGCAAGGAAGAACGCGCACCTTTTGTTTGGACTATTTTATTGTTTGTGCTTACATTTCTGGGTTTGGGTTTAATTGTTTTCCCCTATATTATCCCCAGGCAAATTACAATTTATGAAGCATCTGCTGATCCTAGTTCTTTGGTAATCATGATCATTTTTATTGGGTTTCTAATTCCGGTGATGTTGTTTTACAATATTTATCAATATATTGTCTTTCGGGGTAAGGTGACTGGTGGTGAGTATGGGGAATAGTTGACAACCAGCCTTTTTGCGCGGATGGGTGGGTGTTAAAAATCAAGAAGCTGAAAAAATGCCTGTATCTCTTGATAGACTTGGTTTTGAGGCTGTTAATGTTATTCACCCATCCGCGCACCTTACCCAGACTGGGTTTCAGCGATTTTCACTGTTGACACAATTTCTGTAATGGACTATGATCATGATGCTCGCGCAACTGAACCTTGAAAACCAAATACAGATAAGCTTTCGGGATGCCGC # Right flank : CTAAGACTGTTTCAGACATCGGAAACGTAAAACTTAAAGTTATCTCGTTCCCAGTCTCTGACTGGGAATGCTATCACAGAGGCTCTGCCTCTACTATCATTGAAGGCAGAGCCTTCTAGAATGCATTCCCATACAGAGTATGGGAACGAGAAGAAAACAACTTCAAATAATTTCACCTGTCACCTGTCACCTGTCACCTGTCACCTACTATAATTGCCAAACCTTAATTGACTTATCACCACTACCACTAATTAAAGTTTTACCATCTTTACTCACAGCCAACGCATAAATACCCCCAGCATGACCTTCAATAGTGCGGATTAACTTCCCAGTTTTTAAATCAAAAATACTAATTTTTCGACCTAACCCACCAGTAATAAAACTTTTTCCATCAGGAGTGAGAGCAACAGCATTAATGCTACCAAGTTCAGCAGTAAAATTGTGAACAACCTTCCCAGTTTTGAGATTCCAAACCTTTACATTCTTGCCATCAGTTTGCT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATTGCAATTTCCTTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : TATTGCAATTTCCTTTACTCCCTATTAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.79%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA // Array 1 307-489 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQU010000040.1 Anabaena sphaerica FACHB-251 contig40, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 307 37 100.0 36 ..................................... TAATCGCATTACCTCTAGAATTCCTGAATACATAAC 380 37 100.0 36 ..................................... CCTTTCCTTTTACTGTATGTGTCATTTTTTAAGGCA 453 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 3 37 100.0 36 GTTGAAATTTCAAATAATCCCTATTAGGGATTGAAAC # Left flank : AGGGGGGCAGGGGAGCAGCGGGGCAGGGGAGCAGGGGGGCAGGGGAGCAGGGGGGCAGGGGGAAGAAATTTGGGATTTTTGCGCGGATGGGTGGGTGTAAAAAATCAGGTGCTGTGAAAAATGTCTGAATCTCTTTCTAGGCAATGCTTTGAGGTTATTCTTGTTAGTGACACACCCGCGCACCTTACACAGAGCCGGTTTCAGCGTTTTTTGCGTTTGACACAATTCCTGAAATGGACTATCATAAGACCATCCGCGCAATCGAACCTTGAAAACTACATATATATAGGCTTTCGGGCTGCCGCAG # Right flank : CATTATGCCAAAGCGATCGCCGGGAAGAATATAGGACTTACGCAAGATTGAACTCAAAACCTGATTCTTGCGTAGGGGTAATTCATGAATTACCCCTACTTCCGTTCTGTTTTGCGTAAGTCCTGGAATATTATCTTCAGTGTTGAAATTTCAAATAATCGCTAACCAACAAACCACCTAAAATTAAAGCGATCGCACTTTCAGTATGTTTTTCTACCATTTCTGGACTGAGGCGATCTATGTCTGGTGTCAAATGTTTCCAGTTTTCCTGCACAGTAAAGTAGAAAATGCACACACTGATAATATGAGTCAAGGTCAAAAATGGATCTACAGGCCGGAAACATCCTTCGTTGATCCCTCTTTCTAAAACTTTAAGCAGTGGTGCGTATAAAGTCATGGGGTTAATCTGCTTGAAATACAAACCCTGATTTTGACTCGCTTCCTGAAACCACAACATTTGACGATGGGGATAAGCGACTTCATAAGCGATCGCACTACGA # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCAAATAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 1 133182-133805 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQU010000006.1 Anabaena sphaerica FACHB-251 contig6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 133182 37 100.0 41 ..................................... CATTAAAAACCTCTGGTAAGCAATTTAAATGCAGATATCAG 133260 37 100.0 33 ..................................... TCAATAACTATGAGCAAATAAAAATTGCTCATA 133330 37 100.0 35 ..................................... CTTTCTTCTGGAGAATAATTGATGATTGTTTACCA 133402 37 100.0 35 ..................................... AGGAGTCGAGCCGGTGGCGATCGCCCAAGTTGCAA 133474 37 100.0 36 ..................................... GTCTTTATATCAAATATATTGATGTAAAAAAGCACG 133547 37 100.0 35 ..................................... AATAAATTCTCATGCCTCAGCCCCTCAAAAATTTT 133619 37 100.0 33 ..................................... CGCTCGATTTTGGATGGTAGAGAAGCGGATAAA 133689 37 100.0 43 ..................................... AGAGAAAAACGTCAATCCCTAATGGAGCGCGTCAAACGTGGCA 133769 37 78.4 0 ...........................AACCCA.C.T | ========== ====== ====== ====== ===================================== =========================================== ================== 9 37 97.6 36 GTTGCAACATTAAATAATCCCTATTAGGGATTGAAAC # Left flank : AGTTACCCCCACTGCTACAAACTGAAATTAATAACCGTGTTCCTTTGTATAAGCAAGCGCCAACTGCTTTTCTGGATGGGGAAGATATGACTTCTTGGTTATATTTCCAAAAGAATTTTCCGGCTTATGAAGCTGGGGAAGTTTTTCCTTTACCAGCACCGGAGGAAGGTTAGTTAGAAGGCAGGAGGCAGGAGGCAGGAGGAAATATTATTGTTTAATCAGCTTTTTAACCTCTTGTGATGATGCCGTTGTGTACTGCTTTTTTGGCTAAAATGCGCGAGGGGGTGGGTGTAAATTTTCAGGTGATGGAAAAAATGCTTGAATCTCTCTCTACAGAATGGTTTGCAGGTATTTTTGTGGTTGACACCCTCGCGCACCTTACACCGTCTAGGTTTCAGCGTTTTTCGCTCTTGACACGATTCCTGAAATGGACTATGATGATATCGCTCGCGCAATCGAACCTTGAAAACTACATATATATAGGCTTTCAGACTCCCGCA # Right flank : TTTACAAGGGTTTGTTGGGTTTCACTTTGTTCAACCCAACCTACAAAAATCCTTAACCGAACAGTATTGGGACAGGACTTACGCAAAATTTCTCTGAAACCCTCTTTCCTTCGTATCCTTGGTTCCTATGCCTTCGGCACGCTTCGCGAACGTAGTTCATTCTTTCGCAAGTTCTAACAAATTAAATGCACAACAGCTTAATATTGGGCGAAATTTTACAATACAAAAGAGCGATCGCTAAAATTCCCCTAAGAGGTTGTTTGAAAAGTATTAGATGAAACCAATAATCTTCAGCAACTTAACCCCCCTTCCCCCCTTCCCTACGAGGGAATGAGGGTTTCAAAGCCTCTCCCCGCGTCGGGGAGAGGTTTGGAGAGGGGTTTATTTATACATTCAAAACTTTTAAAACATCCCCTAATAAAAATAGTTAACCTTTAGAATTTCCGCATCCCATGATTAACAGGATCAAAACCCCTAGAAAAACGCGTACTGTCATCATA # Questionable array : NO Score: 9.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACATTAAATAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA //