Array 1 63394-61400 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZGK01000002.1 Moraxella catarrhalis strain COPD_M127 NODE_2_length_344647_cov_11.7494, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 63393 28 100.0 32 ............................ GTGCAGCTTGGGGCAGTGAATCAGCAGAGGCA 63333 28 100.0 33 ............................ ATGTAAAACCCAAAAACATAAACTCATTTCTAA 63272 28 100.0 32 ............................ TGTGGGCGATTATTAGCAAAAATTGGAAACTT 63212 28 100.0 32 ............................ AAAGCCTATAAGCCCAACGCCACCGTCATTTA 63152 28 100.0 32 ............................ TTTTGCCTGATGCGTGTTTTTTGCAATAAGCC 63092 28 100.0 33 ............................ GCGGTCGTGAAGGCCTGGACAGACTGGGTATCT 63031 28 96.4 32 ...............A............ TGCCACTGTGTACACAGCGTGGCAAGGGTATC 62971 28 100.0 32 ............................ ACCCCAAAATACATCTACACCGATGATAACAA 62911 28 100.0 32 ............................ ACGCTGTAAAGCGTTTAATGTTTTGAGCGTCA 62851 28 100.0 32 ............................ TAACAAATCATCAAGACCACCACCGTCTCCGC 62791 28 100.0 32 ............................ AAGAACTAAACGCCCAAGCATTTGACGAAAAA 62731 28 100.0 32 ............................ TATCGCAATTTTGTTAAAAATGTGATACCCTT 62671 28 100.0 33 ............................ AACATTCCATTCAAATTCAGCAGTGTAGACATT 62610 28 100.0 32 ............................ ACAGGCACTATGGGATTGACATTTGGTTTATT 62550 28 100.0 32 ............................ GTGGGCAAGTCTTTGCTGATAAAATCACAGGT 62490 28 100.0 32 ............................ TAAGAAAAAGCCCCTGTGTCAAACAGGGGTTT 62430 28 100.0 32 ............................ ATCTATCCATTTCCGCAATCCCAAACTGGGGA 62370 28 100.0 32 ............................ TGAGTTTATGTTTTTGGGTTTTACATCTCAAA 62310 28 100.0 32 ............................ TACAAAATGACAGCTATCCCATCCGCTCATAC 62250 28 100.0 32 ............................ GCCGTGCCCCCATTGATGCCTTTTTTGTCTGT 62190 28 100.0 32 ............................ ATCTTTGTTTTTTGTGATGTTGCAAATCTCTG 62130 28 100.0 32 ............................ AAACGGTGGGGTCTCATACTTCATCAATCCGT 62070 28 100.0 32 ............................ GCACTTTCAATGCTTGGTATCTTGCTGTTAAC 62010 28 100.0 32 ............................ GTGGGCAAGTCTTTGCTGATAAAATCACAGGT 61950 28 100.0 32 ............................ CAAGTGAGTTTGATAGAAGCTTTAAATCTTCT 61890 28 100.0 32 ............................ TGAGTTTATGTTTTTGGGTTTTACATCTCAAA 61830 28 100.0 32 ............................ GATGTCGTGCCAGATACCCAGTCTGTCCAGGC 61770 28 100.0 32 ............................ TCATCGGTGTCGGTTACCGATTTAATTTGTAG 61710 28 100.0 15 ............................ ATCGGATTAAAAGCT Deletion [61668] 61667 28 96.4 32 ..........A................. TAGCACCGCCCAGCCGCCCACACACGCACATT 61607 28 100.0 32 ............................ ACATCATCGCCGACATTTTGCACGATGACAAG 61547 28 100.0 32 ............................ ATTACAAGGTTTTAAATAATCATTTAACGCTG 61487 28 100.0 32 ............................ AAGCGATTAATCCGCTCACCAATTGTTCTGTT 61427 28 96.4 0 ..........A................. | ========== ====== ====== ====== ============================ ================================= ================== 34 28 99.7 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGCGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTGAAGGTATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //