Array 1 57037-55909 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDRV01000013.1 Salmonella enterica subsp. enterica serovar Ruiru strain 71 NODE_13_length_66433_cov_2.01283, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 57036 29 100.0 32 ............................. TCACCGTTTCCAGCACAAGCCCCGCCAACTGG 56975 29 100.0 32 ............................. GCAGGTATGGTTCTGGGATGATGATTGTAATG 56914 29 100.0 32 ............................. CGCGTCTGGCTTTTACGGATTCACTGGCTGCG 56853 29 100.0 32 ............................. TAGTTTCACCTGTTTCATGCATTAGCGCGATG 56792 29 100.0 32 ............................. ATATGAATCCGCGTCCCGGTGGTGATGTCTAT 56731 29 100.0 32 ............................. AGCATGGAATGCTGTCGGTGATGCGGCGAAGT 56670 29 100.0 32 ............................. GGAACGTGAAAGTGTCCACCGGCACGACCTAT 56609 29 100.0 32 ............................. CGGATTCAGCCCTGATAATATGCTTTCCCCCT 56548 29 100.0 32 ............................. CGTATTTTTGAACTGGCCAGCGCCACCGATGC 56487 29 100.0 32 ............................. GGTTACGCGGGCGTCTGTTAAAGAGTCCTCGT 56426 29 100.0 32 ............................. CGCCAGCGCTGAGGTGAATTTTAACGGTGTCA 56365 29 100.0 32 ............................. AAACAACTCTGTCTATTTTATGAATAGTTAAA 56304 29 100.0 32 ............................. ATTTAACGCGTTTTTTGGGTTTTCCCCTTATG 56243 29 100.0 32 ............................. TTGACCGGACTCGCGGTTATTCAACTAACCGT 56182 29 100.0 32 ............................. GTACGTTGCCAGATTGCTTTCAATGATGGCGT 56121 29 100.0 32 ............................. GCCGGGGTTTCCCGGAGGCATTCTGATGAAAG 56060 29 100.0 32 ............................. GTGAGCTCGGTTTTAATTTCGTCGCTAAGGTG 55999 29 100.0 32 ............................. CAAAAGGCCGACAGTGTGTACACCTCTAAAAA 55938 29 96.6 0 ............T................ | A [55911] ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAATTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGTGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGTGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5375-6745 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDRV01000113.1 Salmonella enterica subsp. enterica serovar Ruiru strain 71 NODE_113_length_13792_cov_1.95397, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5375 29 100.0 32 ............................. CGCAAAATGGCAGAGCGATTGCAGGACGTTAA 5436 29 100.0 32 ............................. CGCATTGCAAGCGCCCTATCTTCAGCATTAAA 5497 29 100.0 32 ............................. AAATACTACAATGGCAATCAGGCATCCTTTGC 5558 29 100.0 32 ............................. TCAACGCCCTTGCAGTTATGTGCCGGTTACGG 5619 29 100.0 32 ............................. CGCCTGGAAACATCAGGCGGGCTTTTCGACGA 5680 29 100.0 32 ............................. GAGGTGTGATCACCAAACAACCTGTTGAGGCG 5741 29 100.0 32 ............................. GCAACACAGGGTTTAACCGGTTCCCTGGCGCT 5802 29 100.0 32 ............................. CGTGTTAACACGGCTGGAATCGTGCTTGTCGG 5863 29 100.0 32 ............................. AAAACGAGGGATCTGATCTCGCTGTTCGGCGC 5924 29 100.0 32 ............................. CAGGCGAAGAAAATTAACATTACGCATAATCC 5985 29 100.0 32 ............................. AACATCTCCTGTGCGATAACTTCTGTCATTCA 6046 29 100.0 32 ............................. TTGATCCGGGCATTTGAATATTGGGCTAAAGA 6107 29 100.0 32 ............................. CCTGCAATCACAGTCGGAACATACTGCATTCA 6168 29 100.0 32 ............................. CAATTGCGTTCTTGCTTATGCCCAGCGACTTA 6229 29 96.6 32 ..G.......................... ATTTCAAACACTCCGGGTCTGCCAGCGCCTCA 6290 29 96.6 33 ..G.......................... CCGAGTTTAGGTATTGAAAGATCAGAGTTTAGA 6352 29 96.6 32 ..G.......................... CGGAAACAAACAAAGTTTTGCGCGATTCCACC 6413 29 96.6 32 ..G.......................... GCGAAATTCCCCAGATACCGCGCATCGGCACT 6474 29 93.1 32 ..G.........T................ CTCGGGGATTTTGTGCCACCCAAAACGCTCGC 6535 29 93.1 32 ..G.........T................ TTGCCACAACCACAATGGATCAGGAGCAATTA 6596 29 93.1 32 ..G.........T................ GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 6657 29 93.1 32 ..G..........T............... CCGGATGAAAACGCCTACCCGGAAGACTACGA 6718 28 89.7 0 ..G....................-.G... | ========== ====== ====== ====== ============================= ================================= ================== 23 29 97.8 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAATAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCATGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCACTGATAAATTTTTCCATAGCGATGCACAGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGGTACACACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCATTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGACAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAAGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //