Array 1 364753-367620 **** Predicted by CRISPRDetect 2.4 *** >NC_021175.1 Streptococcus cristatus AS 1.3089, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 364753 32 100.0 34 ................................ TATACGTGTGTTTGATAATAGCTGTCTCAGGGAC 364819 32 100.0 33 ................................ CCCAAACCCATAAATGAGTTACAGCATGGCGAA 364884 32 100.0 35 ................................ GGAAGTTACTGGTGAAAATTATTATATGTGAGCAA 364951 32 100.0 35 ................................ ATTTTAGGGTGGAAGGTCTTCCAACGTTCAGCCAT 365018 32 100.0 33 ................................ AAACCAAGTTATCACCGTGACAAGAATGTATGA 365083 32 100.0 33 ................................ GTTCCAATGTCACTTGATGTTACTTTCCACTTG 365148 32 100.0 35 ................................ TGATATAAGCTGATAGGGAGAAAAATTGAACTGAC 365215 32 100.0 34 ................................ CAGATAATTTTGAAAAACCCTTTATCTATTAAGG 365281 32 100.0 34 ................................ AACAAATTTAGTGCCATCTGGCAGACCAGCTAAT 365347 32 100.0 34 ................................ AACGTTATGGTGATTTGGTTTATTCTAAGACTAA 365413 32 100.0 33 ................................ ATCCTATCCTTATGTGATGTATGGTCACAAAAT 365478 32 100.0 34 ................................ ATCAGGGATGAACTTTTTAGGAATGATAATGCAC 365544 32 100.0 34 ................................ GAAATCAATATAATTTCCTTTATAATACGCTACA 365610 32 100.0 33 ................................ CTGTTGTTTCGGACACATTCTCACCGCTTGAAT 365675 32 100.0 33 ................................ TATGCTAGGTTTGAACTCATTAGGTGTTGATAA 365740 32 100.0 34 ................................ ACCATCCGCTACGAAGACCTGAACAAGCTAATAG 365806 32 100.0 34 ................................ CTCAACAACTACCATTTTTATACGATTGATAACT 365872 32 100.0 33 ................................ TGAGAACCTTTTTGAAAGGGTCAGCGCCAGAAT 365937 32 100.0 32 ................................ GGAAAAGCCTGGTTATTGAAAATATTTAGTTT 366001 32 100.0 34 ................................ CAGATGAATTGAAAAAGTATGCTCTTGATCCAAC 366067 32 100.0 33 ................................ TTTGGTTGAAGCAGATAGGCTAGATTGACCGTC 366132 32 100.0 33 ................................ CACTGGTCTAGGGTGTCTAATAGACGACTGCGA 366197 32 100.0 35 ................................ CTAGCAGAAGAAAGCCTTATGCTTAACATCATCTT 366264 32 100.0 34 ................................ TTATGTTGACATAAAATCTCTTGTAAACGGTAAG 366330 32 100.0 34 ................................ AACGATGGATGTAGTGTATGTGAGCATGACTAAG 366396 32 100.0 34 ................................ GAGTTACTGGCGAAAAAACAATTTATGCAGTAAA 366462 32 100.0 35 ................................ ATAAAACATAGCATATATACCACGTGAAAGAATAG 366529 32 96.9 35 .................G.............. TCAATCATCTTCCAAGCAAGAAAGTTCCTTATCTT 366596 32 96.9 34 .................G.............. AGAAAGCTGCATCAAGCTTATTTGATACTTTTAC 366662 32 96.9 34 .................G.............. TAGTTGGTGCAAAAGAAAGCCAGATGTAAAAATC 366728 32 96.9 33 .................G.............. CAGTGTTTATCATAGTAGGAAGCTCATCGAACT 366793 32 96.9 34 .................G.............. GTTTCAAAGAAACAACAATCACAAAACAAAATCC 366859 32 96.9 33 .................G.............. ACATAAACTATTGACATTATTTTCATTTATATT 366924 32 96.9 34 .................G.............. TTAAAAAGCTCTAAATCAAAATTAGTTAGATAAA 366990 32 96.9 34 .................G.............. ACTCCACCCTTTAAGAGCGTCATAACCAATGGTT 367056 32 96.9 35 .................G.............. GAAGGAATGTTACACATCCAAGTGCGATTAAACCA 367123 32 96.9 34 .................G.............. TCCTCAACTATACCTAAAGGCTTAATAAGTTCAT 367189 32 96.9 34 .................G.............. GTAACTTGAGAAGACTGCTCCTGCTGTTGGGGTT G [367208] 367256 32 96.9 35 .................G.............. ACTGATGGTTTATAATGAATAATAAGTAATATAGA C,G [367262,367271] 367325 32 96.9 34 .................G.............. ATTGTTTAGGTAGTTCAATGACTTCGAGATAAAA 367391 32 96.9 35 .................G.............. ATACATTGCCCGTTTAGCTTCATCTAAATAATACT 367458 32 96.9 32 .................G.............. TGGTTGTTGATGAAATTAAGTCCACCCAAATA 367522 32 96.9 35 .................G.............. ATGACCTGCATTACGGCCTTAATGATGCCTAATAC 367589 32 96.9 0 .................G.............. | ========== ====== ====== ====== ================================ =================================== ================== 44 32 98.8 34 GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT # Left flank : CTAAGACAATCCGTGGGGAATTGGAATCCTATCCACCGTTTTTAATATAGGAGCCGGTTTATGATGGTATTAGTAACATATGATGTGAATACTGAAACTGCGCAAGGCAGGAAAAGATTACGTCATGTGGCAAAATTATGCGTTGATTATGGGCAACGCGTTCAGAATTCAGTTTTTGAATGCTCAGTAACTCCTGCAGAATTTGTAGAAATAAAGGCTAAGCTTTTGAGTATTATTGACACTGAGTCTGACAGTATTCGTTTTTATTTGCTAGGAAAAAACTGGCAAAATCGTCTAGAAACGATTGGACGTAATACAAGTTATGATCCTGATATAGGGGTATTACTCCTTTAAATAGTCTAGTGCGAATAGGTGTTGCTCATAAAAAAGAAGGACTTTCGCGCAAAAAATAAACAAAAACAAGGCAAAAATTCGAAATTTTAGAAGAATTTTCTTCTCTCGAAAGATAATGTTTGCTTAAAACAGTGCAACTACGCGCT # Right flank : TAACACCCTCACGCTTGATAACCTCAAAATAACCAGTCGCTCCCTCCCAGAATGGAACCTACTGCGGTTAACAAAGAGCTAACCTCTCCTTTTGGTTGGAAGGTTATTTGTCAGTTTTAGAGCTATGTTGTTTCGAATGGTTCCAAAACCAAGCGCCCCAGATTCAAATAAATCCGATTCTTAAAAAGAGGGTCGGATTTTAGTTTTGTTTGATTTCGATTTTCTCCCTATAAATTTTTTGCAATATCTGCCTGTATTTTCCTGAGATTCTGTTATAATGGTAAAATATTTATTTAGGAGGAAGAGAATGAACTATATTTTGGAAATTTTACCCAGTCTTCTAAGTGGAGCGGCAACTACCTTGCAAGTGTTTGCTTTGGTCTTGGTTTTTTCGATTCCTTTGGGAATTATGCTGGCTTTTTCGATGCAAATTCGCTTGAAGCCCCTGCAATGGCTGCTTCATATTTACATTTGGATTATGCGTGGGACGCCGCTTTTAT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT # Alternate repeat : GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 525220-528358 **** Predicted by CRISPRDetect 2.4 *** >NC_021175.1 Streptococcus cristatus AS 1.3089, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ===================================================== ================== 525220 24 100.0 46 ........................ TATTGTTTTTAATCTCATAAAAATCTAAATAAAGTTAGACCCCCCC 525290 24 91.7 50 ........A..............G ATTTTGAGTTTAGGAATGCGTATGCCCCATCGATTCGTTAGAACCCCCCA 525364 24 91.7 49 ........A..............C TATTTGTGTCCTTATCTGTAACCTTATTACGGTTCGTTAGAACCCCCCC 525437 24 95.8 47 ..............A......... TATAATGCTTGTGGCTCTTAGGAAGGAACTTCCGTTAGAACCCCCCT 525508 24 87.5 47 ........A.....T........G ATCCTATGTCAACTACATCAAAATAATATACGCGTTAGAACCCCCCT 525579 24 95.8 48 ..............A......... TGTTTTGCATTGGTGTGTGGAAATAAAGATCCATACGTTAGCCCCCAA 525654 24 83.3 49 ......T.A.....A........A AATCTTAAGTTTTTCAATTTACTTGAAATTCCCATTGGTTAGCCCCCCC 525728 24 95.8 47 ........A............... TTCGCACGATGTCGCTTATGTGGTTGATGTGTTCGTTAGAGCTCCCC 525799 24 95.8 50 ..............A......... TGTTTTGCATTGGTGTGTGGAAATAAAGATCCATTCGTTAGATCCCCCAA 525874 24 91.7 43 ................T......C TGCATCTTCTTCTGTCCAGACCAGCTGGTATGTTAGCCCCCAA 525943 24 91.7 47 ..................T....C TACCGTTCTGCGGCGCTATCCCAGTGAGGTACTGGTTAGAACCCTCC 526014 24 91.7 49 ........A..............C CAACAGGGGCTTTACCTTGATTTGCTGGGTCTAATGTTAGCTCCCCCCA T [526015] 526089 24 95.8 49 ..............A......... TGCGATTCCCATGTTTTAAAACAAACATTTTTTTAGTTAGAATCTCCCA 526162 24 100.0 49 ........................ GTCATCATTTTATAAATATAAGAGTCGCTCATTTCGTTAGAACCCCCAT 526235 24 95.8 49 .......................A TAAGTTTATAGGTTATCATCGAATTAAAGAACTTGAGCTAGACTCTTCC 526308 24 95.8 49 ..............T......... CGTCGATACGACTCTGAATGTCCATATCAAGATTTTGTTAGACCCCCAA C,A [526309,526312] 526384 24 91.7 53 ..............T........A AAAAATCCACTAGTGAAGCGATAGGAGTTTGGGATGAGTTAGACCCCCCCCCC 526462 24 91.7 48 ........A..............C CCAATTGGCTCTTTAGTTTCAATCTCAAGGATTGTGTTAGAACCCCCA 526534 24 100.0 48 ........................ TAAAATACTCCTTCGTCCAGCTGTACACTGTATCAGTTAGACCCCCCC 526607 24 87.5 49 ........A.............TG GTTCTAAAACCTCGCATTGAGCAATATCTTCTGTGTTAGATCTGCCCTA 526680 23 87.5 48 ...-..T................G AAGTAACGAAGCCTAATACATTATCAGGACCCTTTGTTAGACCCCCCC 526752 24 91.7 43 ........A..............G TTTCACCGCTTCTTCTTATCCGGTGTTTTAGTTAGAACCCTCC 526819 24 91.7 49 ........A.....T......... TGACGATGACAGGGCGCTTTTGGACATCACGGTACGTTAGATCCCCCCT T [526820] 526893 24 87.5 45 ..A.....A..............G CCATGCCAGCATCTTTAATAAAATCAATCATTGTTAGACCCCTCC 526962 24 87.5 49 ........A.....A........A TAAGTTTTATAGGTTATCATCGAATTAAAGAACTTGGTTAGACCCCCCA T [526963] 527037 24 95.8 45 ..............T......... CACGCTCCCAATCTAAAATCACGCGCATTTGTGTTAGAGCCCCCT 527106 24 91.7 47 ........A..............A GAAGAGTGCCGGATTTACAGAAATGGTCGATAATGTTAGACCCCCCA 527178 24 95.8 47 .......................G AAATCAAGTGCACTCAAATCATCAGCTCCTTTAGTTAGAGCCCCCCA 527250 24 95.8 47 .......................A TACTTGAAGATTCAACAATAGCGAACCTACGGCCGTTAGAACCCTCC 527321 24 91.7 49 ........A..............C TAGCAATTTCGATTGCCAGTTTTGATTGGATGTTTGTTAGATTCCCTCT T [527322] 527395 24 87.5 50 ..A...........T........G CAACATCCATGTCGTCAAAGTGCGATCGATAGCCAAGTTAGAGCCCCCCA 527469 24 87.5 49 ........A.....A........A TAGGGTCAAATGGTGCTACTAAGTGTTTACGTTTGGTTAGAACTCCCAT 527542 24 87.5 49 ..C...........T........G ATTCACCCCACGAAATTTTGAAATAGATACCTGCTGTTAGAATCCCCTT 527615 24 91.7 47 ..............T........A GCTCTGGATTTTCGTAGATGTTACCGATGATTTCGTTAGAACTCCCT 527686 24 91.7 50 ........A.....T......... TTTTCAAACTACTACTAGCGTTTGCTAGCTATCTAAGTTAGAACCCCCAA 527760 24 87.5 48 ........A.....A........G ATAAATGTACCAATCAGGTAGACCAAGAAAATATGTTAGATCCCCCCC 527832 24 87.5 45 ........A.....T........A GAAAATCAGTTAAGGTTCGACTTTCGTATTTTGTTAGACCCCCCT 527901 24 91.7 52 ..A.....A............... CTAAAATTTCAATATCATGTATCATAGTCTCACCTATATGTTAGACCCCCAA 527978 24 91.7 45 ........A.....A......... GAATCCTCCTAAATAAAATTTTCAAGCAAAAGGTTAGAACCCTCC 528047 24 95.8 47 ..............T......... ACCATCGATCATCCCAAAATGATCCTTGTCAGCGTTAGATCCCACAC T [528048] 528119 24 95.8 48 ........A............... AAAATCTTTTTACCATATCGTTTAACAGCCTTTTGTTAGATCCCCCCT 528191 24 100.0 46 ........................ CTTTTCAAACAGTTCTTCCCAAATTGTAGATTTGTTAGACCCCCCC 528262 24 95.8 49 ........A............... TGTGATTCCCATGTTTTAAAACAAACATTTTTTTAGTTAGAATCCCCCA 528335 24 70.8 0 ........A.....T..A..GTGG | ========== ====== ====== ====== ======================== ===================================================== ================== 44 24 92.0 48 AATCCTCGCGAGGGGACGGAAACT # Left flank : TGAAGCCTTGGATCCAGCAGAGTATGTGTCTAGCTATACAGGAGGAGGGAAAGATGGTCTTCTTTAATCTTGATGATGATGAAAAAGAGTTTGCCAGAAAGAAAACAAAATTTTGTCTGGTTATTTACGATATCGTCAGCAATAAGCGGCGCTTGAAGCTGGCAAAGCTTTTGGAAGGCTATGGCGTGAGGGTTCAGCGCTCCTGCTTTGAGCTGGCTCTTGAGAAGCTGGACTTTGACTGCCTGGTGAGAGAGCTGAGAACCTTTTATCAGGCAGAAGAAGGGGACAATATCATTATCTATCTGGGGCATAAGGAAGAGAGGATTGTTTTTAATCCTTATGCTAGCGCGGAGTTGCTAGAGGATATTTTGTTCTTTTAAGCTGTTATTTCTGGGCTAGACATGGTATAATGGACTTAGGTTTTAGCTAGTTTCTAAGGGGTACAAGATGTGGTGGGGCTCTTTTGAGGCTTTATACAAGATATGCCGTTAGACCCCCCC # Right flank : GCTGGGGGCTTTTTTACTTTCCCTCAGCTTCTTGCTTCGCCAAGAAAGAAGGATCTTGACTGCTTAAGCTTTTTTTAAACGCTTCAAAAACATTGACAACGCTTTCAAAATTTTATATAATAAGCTGAGTAGATAATAATCGTTCTAAAGGGCGCCATGAAATCGGTGAAAGATTCTTTTGCCTTTTTCGGGCGCTTTTGCAGTATAGAGAGGAGACCGTGTGAAGAAAGTAGAGTTACATTTATCAAAGACAAGACTAAAAGACGAAGAATTGGTCAGTAAGCTTCAGGGCTTTTTGATGGCGCAGATTTCGCCAGACTTTGCGACCTTTCTCCATGAGCAGGAGACCAATCCCTACTCGATGAATCTGAGTTCCACGCGCGATGAGTCGGTGTGGGTTGTCAATTTGCTTTCAGAAGAGGCGGAACGGCAAATGCTAGCTCCTTTATTAAACTTGGAAACCATCAAGCTAGATAGCTATGCTGAGGAAATCCTTGTCA # Questionable array : NO Score: 4.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:-0.07, 8:1, 9:0.12, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCTCGCGAGGGGACGGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [24-38] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //