Array 1 40214-39452 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCFP01000008.1 Helcococcus ovis strain KG-40 NODE_8_length_58325_cov_119.598904, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 40213 36 100.0 30 .................................... AAATGGAAATTGATGAAGTAATAAACATGT 40147 36 100.0 30 .................................... AATTAACATTATAAATTTTACATAGCTCAA 40081 36 100.0 30 .................................... TTATCAAATAAAAATAAAGCAAAGTCTGAT 40015 36 100.0 30 .................................... ACTTATCCAAGACTGACAATGATATTGAGA 39949 36 100.0 30 .................................... AAGAATGTGGAACGTTTAACCGTTGTTTCA 39883 36 100.0 30 .................................... ATTAATTGGAGATATGAAATAAGGTATAAA 39817 36 100.0 30 .................................... TCAGAATGAAAATACATCAAGAGCTAAAGC 39751 36 100.0 30 .................................... AGCAATTCAACTAATGCAAATCACTCAAAG 39685 36 100.0 30 .................................... ACTGTAGCCAAATTGATGGGTGATACTTTA 39619 36 100.0 30 .................................... CTTAAAAAGCCGTTAAAAACGGTTGTTTAT 39553 36 100.0 30 .................................... TGCTTATCATCAATCGTATACGGTGTTGAT 39487 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 100.0 30 GTTTGAGTATGATGTAATTTCGTATAGGTATTAAAC # Left flank : AAAATAATTAATAAAATAATTAAAGATTTATTTTTATTATCAAAAAGTGAAATATTTTTAGATAAATACTATCAAAATAATATAATGTTAAAAAACTTTATTTCAGATTTGATATTTGAATATGAAATACCATTGGAAATAGATGATGAAGTAGATTTTACATATATATTAAAATCTTTTGGAATCAAAATAAATAATGAATATAGTTCATATATTGAAAATTTGATTAATTATTTAAAATTGTATTTAGAAGTTTTTGGAGTAGATATTTTTATATTTATAAATTTAACACAATTTTTGAGTAATGAAGAGTTTAATCTATTATTTGATTTTATAATGAAAAATAATATTTTGATTATAAATTATGATAAGATATATATGAATAATAAAATTATAAAAAATCAAATTTTATTTGATAATGATTTGTGTAGAATTTTATAATTTATACCATATATGAGATTACCACTTGTGATGGAGTCGATACCACTCATGGATTTGAG # Right flank : AGAATCAATAAAATACTGCAAGCATGACGTGTTTGAGTATGATGGGCTTGAGATATAATAGGGATACAGAGAAAAAAGCTTGATAATTCGGGGCTTTCAGCACTGTATCCCTATTTTAAGAATCATAGAAATATAATAAAATATTGTAAAAGGAGGATTCTATGAGAGCAAAAAATATTTCAAGTCAATATATAATTCCTTCTGCTTACAAAGAAGGTGAGAATAAATGAGGTGGGTAATAAAAATAATATTGTTTCCATTCAGCTTTCTACTTAGTGTCCTTACTGCCTTTCTGACATTTATACTTGGCATAGGAACAACTATTCTGTATTTCTTAATGCTGATGTGTATCGTTGCAGCAATAGGATCATTTATGCAAAAAGATATATCACTTGGCATTGAGGCGTTGGTATTAGGATTTTTGTTAAGTCCTTATGGAATACCGATGGTTGGAGCAGCAGTTATAGCATTTCTTCAAGGAATCAATGAAGCAATAAAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGTATGATGTAATTTCGTATAGGTATTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTGAGAATGATGTAATTTCATATAGGTATTAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 50198-51254 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCFP01000008.1 Helcococcus ovis strain KG-40 NODE_8_length_58325_cov_119.598904, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 50198 36 100.0 29 .................................... GCTTTTATGGGATAAGGATAGCTCGAACA 50263 36 100.0 28 .................................... AGATGATACCAAAATTTAGAGCGTGGGA 50327 36 100.0 28 .................................... AGATGATACCAAAATTTAGAGCGTGGGA 50391 36 100.0 28 .................................... AGATGATACCAAAATTTAGAGCGTGGGA 50455 36 100.0 27 .................................... GTTTGACTTCTTCAACCGAATTGTCGC 50518 36 100.0 27 .................................... AAGTATTTTGAATATTGCCATATAGTC 50581 36 100.0 28 .................................... TGAAAAAAATATAGGTATTGCAACAGTT 50645 36 100.0 26 .................................... AATATAGGAGAAAATTTTGAAGAAAC 50707 36 100.0 28 .................................... GAAATCAAAGTGTATTTGCCAAACTTCG 50771 36 100.0 29 .................................... GACCGCTGTAAATGATTTTTACACACAAT 50836 36 100.0 27 .................................... TTATATAGATTAGGCTCTTCCACAGAA 50899 36 100.0 28 .................................... AAAATAAATGAAAAATATTTTAAAATCG 50963 36 100.0 29 .................................... CGCCATTATTCTCGATATTGTGTCAATTA 51028 36 100.0 28 .................................... ATTGATTTTTATACCCTAATCGACTAGC 51092 36 100.0 28 .................................... AGCTATAAGAGGAAGTTTGAAAACCGCA 51156 36 100.0 27 .................................... ATAATAACAGCCCAGTATCATTTGTAC 51219 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================= ================== 17 36 100.0 28 ATCTACAATAGTAGAAATTATTATGTATTCTTAAAG # Left flank : GACAATAAGGATGAAGCGGTGGAGCATTTACTCCGATTTTAATTTTATCAATAGGAATAATTCTTTGGCCGTGTTCCCTGCATATTTTTGAAGTCCTTTTATCAAGTGTGGCTTCAAACTTTTTAGCAAGTATTCCACGTCTTTTACTATCATCTAATTCTGCTGTATTTACCACGTATGATGTTAATATTCAAGTTCATGTTGCTCTCGCATTTAATTCTAGTTTATCAGTCCACTTTCTATCGCATTTATTTTATATTTTTCAGATATTTCCTATCCTAATTTTCCCTTGTATACCTTAATCCATACAATACAAGACTTCTTCTGTTTTTTTTTTTAAACATTACCATTGTTAAAAACTTTAATATTTTTCTTGTTTAGATATAGATTTATCATTCAATTATTTCATTCGTTCGTCTATCTAAGATTTAACTCCTTGATTTTTTTACGATATTTTTATGTATTATTAAAGAAACAGGAATGGGAAGCGGCGACTTCAA # Right flank : GAGCTAATGCATATATATTCAATAAAAGTGCTCTTATTGTCACTAAAGTTAGTATTGAAACGCATAAACTCTTATTTTTCGAATACATTTTTGAAATCCTTTAAGAATATTAAAAATTAAGTTATAGGTTTTACACTATTATTATATCATCATTTTCATGAATTGGATAGCCATAATTAATAATACTATCTTTATCTACTTTATATATCATTACACTATCAGATTCCTTAAATAATTTTTTGAATTTATTCTCAATATCCGATTTGACTAAGTTTAATATCCTCTCTGAATTTTTCACACAAAATATTGAATATTGTATTCTGTATCCATATTTACTTAAATATTTAGAGAATTTAGTTCTAACCTTATCATCTTTTATGTCATAGCTAACAAAAATCATAATTTACCTACTTATATTTATATATCGGAAATTTTGATATATCTTTATTTTTCATAAATGCTCTATAATAATTTTGTATATACAAAAACATTTCTTCTCT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTACAATAGTAGAAATTATTATGTATTCTTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 16829-16661 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCFP01000022.1 Helcococcus ovis strain KG-40 NODE_22_length_29784_cov_46.568972, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 16828 36 100.0 30 .................................... GACAATAAATGTATTTATAAGATAGAGGGT 16762 36 100.0 30 .................................... CAACAAGCAATAAGAATGATGGCGATAATG 16696 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 GTTTGAGTATGATGTAATTTCGTATAGGTATTAACC # Left flank : TTTTCATAATACTCTTTTATTTCTTGTACATTCTCATAAAATGTTTTTCATTCGAACTGTTAGTAAGAAAATTATTCTTAGCATATACACCTGGTATAGTAAAACTTAAGGTAAATATAAGCACACTTAAAAACATAGCTATTTTCTTTTTTAATTTTGTAATATTATTCTTCCTGTTTTTTTGTTTTTATACTTATATATTATGATACTTTATTATATATATCAACGTTTTCTTATTCACTATATAATTTAAAGTAAATACACCCTTATAGGATAGAGACTGAAGGTCGAAAATCCATAAGGGTGTATTTGTGCTATTGCAAAGAGCTAGTAAATAATATATACTTTATTTACTAAAAAAAAGGAGTTTAGGACTATGGCAAATGTATATTCAAGACAAACAAAAATATCAAATGTAGTTGGTAGAAGTGATTACATTTCAAATGAAAAAAGACAAGAGCATATAGTCTTACATTCCAAAAGTAGTGTCTTTGATTGGA # Right flank : TAATAAGATAACTAAAGGAGAAAGTCCGATAGAAATAGTAAAAGCAACTCACCCAGTTGTTTCGGAATTAACTACACAGGTAGTAATCAATAGTATTCCTGAAGAGGAACTATTAGAAATAAATGTAGAGGGGGAATGGTATGAAGTGCCAAAAAACGTGAAGATACAGGAATTAGCATTTGTATTGGCATCACACCTAGATGCCATATTGAGAATTAAGAGTGAGCGTATGAAAGAGAGTAGACAATTTACTACTGTAATGAATACATTAGCTAACAGGTAGTCTGAAATCTGGAGTCACCAAACAAAACAGAAGGGATAAAAAATAACATAGAATATAAGAAGAGGATAAAATTATTATGTTTAATAAAATTGAAAGAAAACCAAAATGTGGAATTAGAAAATTAAAAGTAGGATTTGTGAGTTGCTTATTAGCATTTGGAATCTTAACAAGTGTAGGAAGTCCTTTAATAGGAAATACAGTAGTAGAGGCAAAAGCA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGTATGATGTAATTTCGTATAGGTATTAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTGAGAATGATGTAATTTCATATAGGTATTAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 20068-18314 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCFP01000022.1 Helcococcus ovis strain KG-40 NODE_22_length_29784_cov_46.568972, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 20067 36 83.3 30 AC....CA.G.G........................ CCATCTCTTATATATTTGTCTCTTGCACCG AC [20058] 19999 36 100.0 30 .................................... AGCTGGAGCGGCGGATGCTTCAAGAGGACT 19933 36 100.0 30 .................................... TAGATGAGAGACTATTGCCCGAATGGTCTG 19867 36 100.0 30 .................................... CTGGTTTTATGTCTATATTTTTTAGTTTTG 19801 36 100.0 30 .................................... ATATCAAGTCATCACATGGAAATGATATAA 19735 36 100.0 30 .................................... AACGAATTAAAAGCTTTAAAAAGTGATGTT 19669 36 100.0 30 .................................... CAAAAATCATGTTAAGATAGTTGTAACAAA 19603 36 100.0 30 .................................... AGAGTACTTAGAAAGCATTGTTAAAACTTA 19537 36 100.0 30 .................................... TGTAGGTGAAAATATATGCCGAACTTATAG 19471 36 100.0 30 .................................... TTGTTTTGCATAAGCATCAATATCTGTTCC 19405 36 100.0 30 .................................... TTGTATATTATGCTAACAAAAAACATAAAT 19339 36 100.0 30 .................................... TTGGCAGATATATATCTATCAAATTGCGTT 19273 36 100.0 30 .................................... TTATACAATCATCAAATAAAAGGGTTAGAA 19207 36 100.0 30 .................................... ACATCTACTCAGTAGGTGTTTTTTCATTTT 19141 36 100.0 30 .................................... ATTTTGTTTTGCATAAGAATCAATTCTTGT 19075 36 100.0 30 .................................... TTATCAAATAAAAATAAAGCAAAGTCTGAC 19009 36 100.0 30 .................................... ATTATGCCTTATACTTTCGTCATTTATTAA 18943 36 100.0 30 .................................... TTTGATATTGCAACTAGGACTAAGCTTGTA 18877 36 100.0 30 .................................... TTTTGATACACAAGTGTGTCATCTACTTCT 18811 36 100.0 30 .................................... AATAGGAAGCAGAATAAAAGAAAAAAATAT 18745 36 100.0 30 .................................... TATGACTCTGCAACATTTTGGAATAGAGAA 18679 36 100.0 30 .................................... AATAGGAAGCAGAATAAAAGAAAAAAATAT 18613 36 100.0 30 .................................... TCTTGAAAAGTTACAAGTCATGATTGAAGC 18547 36 100.0 30 .................................... CGCAGAAAGCAAAAAAACATCAAGTTACGA 18481 36 100.0 30 .................................... TTTACAATTTACATAAAGCTTATCTTTTAT 18415 36 100.0 30 .................................... AAGTTAAAAGGTAGCGAATATGACGAAGTG 18349 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 27 36 99.4 30 GTTTGAGTATGATGTAATTTCGTATAGGTATTAAAC # Left flank : AAATAATTCTGGTGAAAATATGATTAGATATACCTTAGATGCAAGGATAGAAGATGATTCATCGGATGGAGTAAATGAAGTAAGATTATTTTGTTTTGATTTATTACTGTTAATGTGTAGAAGAAGCAAAATGAGATTTTTAGCTCATGATAGTAGATTATTTGCAAACATGGATCCAAGGCAAAGAGAAATGCTTTTACGAATAGCGTACGATGTTACTATAGATTCTGAGTTTCAATATATTTGTTCCATGAATGAAGATACTATAATGTCTTTTAAGGATTTAATGTCAATTGAGGAGTATAAAGAAATAGTAACGAATAATATTATTTTAGAATTAAATGATGATGCATCTGAAAGTAAACTACTTGGTATTCAAGTAGATTTGGATTTAGAAGATAAGCACAAAAATATTGATAATATGAAATAAGTTGTGTAAAAGAGAGGATGTTCAAAAACATTCTCTCTTTTTGTAGGTGATTGAATAAAATGTATCCAAT # Right flank : CGTGAAGAAGTAATCGAGAATATAAATGGCCAGATTGATGTTGAAGAATTATAAAAAAAAATGAAGAGAGGAAATAATCTCCCTTCATTTTTACATTACTTTTATAAAAATATTAAAAAATAAAATCCCTAACAAAACAACTAAAGGTGCTGAAAACACTATCAATTTAATATTACTTTTAATTTCATCATCTTTAGAATTTTTTTTAATAATTAAATTATAAATTATTAAAAAAGATATATTTACGCTTAACAATATGGCTGTAAAGGTTGGTACTATGTCTGTAAACTTGTTTCTGTCAATAATAATCCTAAAAATAAAAACAAAAAATAAAAATATATTAAAACTCAATAATGTTTTTTTTATATCTAATTTTTTTATATTTATATGTTCATTTCTGTTTTTTTTCATTAGTTTCTCCTAATATTAGCAATAAGTTGAAGCGTAAGTTGTACCTAATGTAAATAATAAAGCTACAGCTCCCAATCCTACAGGTCCTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGTATGATGTAATTTCGTATAGGTATTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTGAGAATGATGTAATTTCATATAGGTATTAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //