Array 1 74511-75470 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIFRS010000010.1 Streptococcus dysgalactiae subsp. dysgalactiae strain SDSD37 Scaffold10_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 74511 36 100.0 30 .................................... TGCTGATAGTATTGTTACGGAAATCAAAGT 74577 36 100.0 30 .................................... AAAACGACATCGCCGACCTTTAAATTAATA 74643 36 100.0 30 .................................... ACAAAAACCATTGCTTATACAAAAGAAGGA 74709 36 100.0 30 .................................... TTCTTTGATGTGGCTCACATCGACCGTCTT 74775 36 100.0 30 .................................... TTAATTAACAACCTATTGCAAAGTGAGGCT 74841 36 100.0 30 .................................... ACAAGAAACAAACAGTCTTGACGACTTGAT 74907 36 100.0 30 .................................... ATTCGGTTTACCTAAAAAAGCAAGAAATGC 74973 36 100.0 30 .................................... ATTATGCTGATGTGGTTGAGGCTATACACT 75039 36 100.0 30 .................................... AAAGTATTGTTGCCCCTTACCAGTAACTTT 75105 36 100.0 30 .................................... ACGTCACCATAAATGACTGATTTCATCGAT 75171 36 100.0 30 .................................... TTTTGTCAAAGACAGTATCAATCATTCCTT 75237 36 100.0 30 .................................... TTTTGTCAAAGACAGTATCAATCATTCCTT 75303 36 100.0 30 .................................... TTTTGTCAAAGACAGTATCAATCATTCCTT 75369 36 100.0 30 .................................... TTTTGTCAAAGACAGTATCAATCATTCCTT 75435 36 86.1 0 ............................TTT..TT. | ========== ====== ====== ====== ==================================== ============================== ================== 15 36 99.1 30 GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Left flank : AGAAACCCGAAGTGAAATCGATGATTGACAAATTGGTTGCTACGATTACAGAACTAATTGTCTTTGAATGCTTAGAAAATGAATTAGATTTAGAGTATGATGAAATCACAATCCTGGAATTGATTAAGTCCTTAGGAGTAAAAGTAGAAACGCAAAGTGATACTATTTTTGAAAAATGTCTAGAAATACTTCAAATTTTCAAATATCTCACTAAGAAAAAGTTGCTCATTTTTGTCAATAGTGGAGCTTATCTAACAAAAGATGAAGTGGCTAGTTTACAAGAGTATATATCATTGACAAATTTAACAGTTCTCTTTTTAGAACCACGTGAACTATATGATTTTCCGCAGTATATTTTAGATGAAGATTATTTCTTAATAACTAAAAATATGGTATAATACTCTTAATAAATGCAGTAATACAGGGGCTTTTCAAGACTGAAGTCTAGCTAAGACAAATAGTGCGATTACGAAATTTTTTAGACAAAAATAGTCTACGAG # Right flank : CAACATCGTCAATGGTAACTTGAGAGAGAGGGATAAAGACCATATCCTTATGCCTTTCTATTCTTTCTATTAAAACGTTTTCATGTTATAATAGTCAAAAGGAGAAGGAGGGTGGAGCGATGGAACAAACATTTTTTATGATTAAGCCGGATGGGGTTAAGCGAGGGTTAGTTGGAGAGGTTTTGCGGCGGATTGAGCGTCGAGGATTTACATTTGAACGCTTGGAGTTGCGGCAAGCTAGTCCGGAACTCTTGGCTAAGCACTACGAAGCCTTGCTAACTAAACCATTTTATCCTGAGCTTGAAGCTTACATGACAAGTGGTCCTGTTTTAATTGGGGTGCTGTCGGGAAATCGGGTGATTTCCTCTTGGCGAACCATGATGGGGGTAACTAATCCTAAGGATGCTCTTCCCGGAACCATTCGTGGTGATTTTGCCCAAGCTCCTGGTGATGATGGAGGTATTTTTAACGTGGTGCATGGGTCCGATTCAAGAGACTCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 29402-28644 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIFRS010000012.1 Streptococcus dysgalactiae subsp. dysgalactiae strain SDSD37 Scaffold12_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 29401 32 100.0 33 ................................ TTCAAAGAGGCTATGGTTGTCAAGGAAGCAGAT 29336 32 100.0 35 ................................ GGGTATATGGGATAACGTTAAAGCAGTGTGGGCTT 29269 32 100.0 33 ................................ AAATTGATGTTGTAAACCATCAACACCAACACC 29204 32 100.0 33 ................................ AAGCGAGAAGACGGCCACAGCCTTATTAGACTT 29139 32 100.0 33 ................................ GACAAGTCCGAAACACTTAAAGGGTGTTTTATC 29074 32 100.0 34 ................................ TTTTCCTTCAAAAAATCTGAAACACTATCAGACG 29008 32 100.0 36 ................................ TTGGTAAGACATCTTCGCGAAGTCTTCCTTAGACAC 28940 32 100.0 34 ................................ ACAGCCTCACTGAAAGTCTTAGCACCGCTAACCT 28874 32 100.0 35 ................................ TGTGGCCTCATGCCCTAACCTCCATAATAAAAAGC 28807 32 100.0 34 ................................ TGATGGGGCTAACAGAGATTCCAGAGTTGACACC 28741 32 100.0 34 ................................ TGACAGTCTAAAAAAAGCTCAATTACAGTCACAT 28675 32 90.6 0 ............................C.TC | ========== ====== ====== ====== ================================ ==================================== ================== 12 32 99.2 34 GTCTCACCCTTCACGGGTGAGTGGATTGAAAT # Left flank : CCCTATGTGCAAGCGCAGCTTTTAGCTAAGGCCATACGAGGAGATTTAGAAAGCTATCCACCTTTTATGGTTTAGGAGATTTTATATGATGGTTTTAGTCACTTATGATGTAAATACTGAAACATCGGCGGGCAGAAAAAGATTGCGTCATGTTGCTAAACTCTGTGTGGACTATGGGCAACGTGTTCAAAATTCTGTTTTTGAATGTTCTGTGACACCCGCAGAATTTGTGGATATAAAGTACCGCTTAACACAAATCATTGATGGGGAAACAGATAGTATTCGCTTTTATTTATTGGGTAAGAATTGGCAGAGGCGTGTGGAAACACTTGGTCGTTCAGACAGCTATGACCCAGATAAAGGTGTCTTATTATTGTAAAAACGTTTAGTGCGACTCGAGGTTTCACAGAAGAACATTGCTTGCTCGCGCAAAAATCACTTCAAAAAGAAGCGAAGTGGATTGAAATAAGAGAGGAAGAACAATGGAGAAGAGAAAATCC # Right flank : CTAGATTTTTGATGGATCTATTTTGAGTTTTTCTTCACTCATAAATTTCCATTTGTCTTCTCCCCTCTCTTCCCCCTCACTTATGCTATAATAAGCTTAATAAATGCATGGTAAAGGAGTTAGGATGGATAAGGTTCGGTATGGGATCGTGTCGACGGCGCAGGTGGCCCCTCGTTTTATTGAGGGGGTGCGCTTGGCTGGCAATGGCGAGGTTGTGGCGGTATCCAGTCGGTCGCTTGATAAGGCAAAGGCTTTTGCGGCAGCGCATCAGTTGCCTAAGGCTTATGGTAGTCTTGATGACATGTTGTTGGATACGTCGATTGAAGCCATTTATGTAGCAAGTATCAATCAAGACCATTTTCCTGCGGCTAAGAAGGCTTTACTGGTAAGAGGGCTTTACTGGCAGGCAAGCATGTTCTGGTGGAAAAACCATTTACCTTGACAGCTGCTCAGGCTGAAGAACTTTTTGCTTTAGCGCAAGAGCGCGGCTTGTTTTTGAT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACCCTTCACGGGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //