Array 1 414248-416166 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009678.1 Pectobacterium odoriferum strain BC S7 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 414248 29 100.0 32 ............................. CACTGGCGGCATCACCGGTCAGCTTCCATCTG 414309 29 100.0 32 ............................. ATGGGCGATCTTTTTTGTGTGGAGCGTGTAAA 414370 29 100.0 32 ............................. CGTTGACAGTATTTAAAAATAGTATCGGACAA 414431 29 100.0 32 ............................. ATAGTCCTCCGTTCGGAACCATCCCTCGTTAA 414492 29 96.6 32 ............................A GCCGAGCGGCTTTTAAACGCGCTCGGCTTACT 414553 28 96.6 32 .....-....................... CTCTTCCTAAAATGCCGGACATTAATCCCATC 414613 28 96.6 32 ....................-........ CGCTGCGCTACAGCGTGCCGATGTGGTATCCC 414673 29 100.0 32 ............................. CGTAATCACTTTGCTATCCATTATCATTAGCC 414734 29 100.0 32 ............................. AACGCCGCCCCGTTAACGATGGGTTCATCCTG 414795 29 100.0 32 ............................. AATGCGTTCATAGTCGGGATTGGGGCGATTAT 414856 29 100.0 32 ............................. AATTCTTCCAGCGCATCCAGGCGTTCAGTAAT 414917 29 100.0 32 ............................. CGGCCGTTGTGCTGCGAAACATGCAGCGTTAT 414978 29 100.0 32 ............................. ATGTTGCGCCAGTTGCCGAAGTTGTTGCATGT 415039 29 100.0 32 ............................. CTGTAGCGCCGTACCCGCGCCAGTTGCACGCA 415100 29 100.0 32 ............................. TTCAATGTCCAACCGTTACAAACGCGGCGGAT 415161 29 100.0 32 ............................. CGTTGAACTACTTTTTCCACGCCTTCGTCTAT 415222 29 100.0 32 ............................. TATTCAGCGTCAACGGGCACTGCTTCAATGTC 415283 29 100.0 32 ............................. ATCGGCTTCTGATTGCGAGCTGTAATGAATGT 415344 29 100.0 32 ............................. CATGATTTTTCCACAAAAAAATGAGTGCTGCT 415405 29 100.0 32 ............................. CAATAGTCCGACTGTTTTTTATTTATTAGTAC 415466 29 100.0 32 ............................. CGGAAAATCTGGCGCTCACAAAATGGGATTTA 415527 29 100.0 32 ............................. GCTGCATCACCAGTCATCAATATCTATGCTGA 415588 29 100.0 32 ............................. CTATAAAATGGGCTGTTGCTAGGCTTGCAAAG 415649 29 100.0 32 ............................. CGCCCGCCCCAACTGCCGCCCAGCGATTCCCA 415710 29 100.0 32 ............................. CGCCGTCATCTTGTTCATGTGGCGATTCTGGA 415771 29 100.0 32 ............................. ACGAACGTCCCGGCTCATTTGTCCAAGCATAT 415832 29 100.0 32 ............................. CCTGATTAACTAATTGCTGGGCGCTGCTTAAA 415893 29 100.0 32 ............................. ATTTCCGACAATACCAGCGGCCTGCTGGATGA 415954 29 100.0 33 ............................. ATACGCTATCTGCTGCTTAGGTGCCGTCTTCCA 416016 29 100.0 32 ............................. TATGTTGAAGACGCCGGACACAGGTTCCTAAA 416077 29 100.0 32 ............................. CCCCCTACGATTACCAAAATAATTATGCGTTG 416138 29 93.1 0 .........................C.T. | ========== ====== ====== ====== ============================= ================================= ================== 32 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTGATTGAGGAAGTCTTGTCTGCGGGGGGCATTACGCCGCCGCTACCGCCGGACGATGCACAGCCGCCAGCAATCCCAGAACCGAAACCGTTTGGTGACAGCGGCCACCGGGGCAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTCCCGCCGCGTTTGCGCGGCAGGCTGGCGGTGTGGCTATTGGAAGTCCGCGCGGGAGTGTATGTCGGTGATACCTCACAGCGGGTGAGAGAAATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTGATGGCGTGGGCGACGAATACGGAATCCGGTTTTGAGTTCCAAACTTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : GGGCTTATACCCCTTGTTGCATGTTGGTCTAAATATCCCCCGCACGGGGCCAAATCCCGCTTTTGGCTGGCGCGATGGGGGATTGCGTGTCAGTATTAAAGCACGCCATTTTTTGTGCTCACCGTAATGGTGACGCGCTATGCCAATGATTTTTGTCTTCCGTACGTTACTGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGCCGTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCTACCGAGCATGCAGAGAAAGCGGCGCTGTCCGAACAGCTTCAGTCTTATCAGGCGGGAAGCGGTGCCGTTCCTGCTGGTCAGACGACGCGGTATGATTTCACCCGCATTAGCCCTGCCGAACTGTATGAAACGGTTGAAGGCCTTGTCAGCAGTGGTCGGCTGGGACGTGAAGAAGGGTCCGCGCTGCTGGGTTTTGTCTCATCGCCGAGAGCCGAAGGAGGAAGCATTCCGCCTTCCAATGTGTTCCAGCCGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3970131-3970698 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009678.1 Pectobacterium odoriferum strain BC S7 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3970131 28 100.0 32 ............................ ACTCGTCCCCTCGGCGCGGGATATCGCATCAA 3970191 28 100.0 32 ............................ ACAGGAAATCATGCAGCAGCTTCAAAGCAATC 3970251 28 100.0 32 ............................ AAGGCACGCGAAAAGTCGCAGGGACACATTGA 3970311 28 100.0 32 ............................ GTTATGACGAGCAGGGCAATCAAGTCGGCTTC 3970371 28 100.0 32 ............................ TTGCTGAACCTTAAACCACCACCTTAAACCAC 3970431 28 100.0 32 ............................ AGCATATTGCCCTCCTGTGGCGTTATACAAGT 3970491 28 100.0 32 ............................ AGTGTCAACTTTTTCTTACCGCGATCCATTAG 3970551 28 100.0 32 ............................ TGTGGAACGCTTTGGCGCTGGCACTCATAGTG 3970611 28 96.4 32 ...........C................ TTTAACTTTTCTTGCGCACAAACTCGTGCTGG 3970671 28 82.1 0 AC...........C......T.A..... | ========== ====== ====== ====== ============================ ================================ ================== 10 28 97.8 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : ATCCTGGCGTTCTGTCATAAAGTCAGCGTCAGCGCGATCTTCTTGCAAAAACGAATGCCAATTGGGTTTGACCGGACGCAGTATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACGCCTTCAAAGTCCATATCACGTGGCAAACGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGATGCACCTCCTCCTTAATACAGAATTCAGCCAGCTACTTACCGTTTATTATTGCTGGCTAAAACATCAGCTAAGTATAGATATTAATCACTCGACTGTATATCCATAGCATATGCAGATACTTGGCATAGGCCTATCGTCGATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTTTACGCATCGCCGTAACTCATTGATTTTTAATTTCGATTATCTATGCTGATAAAAAAGGGTTTTTCAGGAAAAATGGTTTATTTCCTTTTAAAATTAGGTAACTACCGTAAAATATGAACG # Right flank : AATAAAACGCGCCGAAAATCAGTAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCTCACTGCCTGACACTGTTTAGGGAACGCGATGTACCACATTGATGATTTCGATCTGAAAATCCTGACACTGCTACAGACTAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGTCGCATCGCGCTAGAACAGGCGCAGCTGATTCTCGGCTATCATGCCCGCCTGTCGCCGAACGCGGTCGGGCTGGAATGTCTGGGGTTGATTGAAGTGCGGTTGATCAATCACACCAGCGAATACGTTGAACGCTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGACGCCTATAAAACCACGGGTGATGCCGATTATCTGTTAAAAGTCGCCGTGGCAGATCTGCCCGGACTCAGCACCCTGATTAGCCAGATTCTGTCGCAGAACAAGAGCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 3978138-3977565 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009678.1 Pectobacterium odoriferum strain BC S7 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3978137 28 96.4 32 T........................... TGTCACAGAGGCGACAATCCCACTACCACCAA GA,T [3978130,3978133] 3978074 28 100.0 33 ............................ TACTAATTAATCAATCAGGAGTTACCCATGCAG 3978013 28 100.0 32 ............................ CAGTGCGAAAGACGTTGCGCATTCGCTATAAC 3977953 28 100.0 33 ............................ ATGCGGATAGTATGACGGGATTATTTTTACGGA 3977892 28 100.0 32 ............................ TGTCCGCGAGTAAGGCGCAGGCGCACGTCTTT 3977832 28 100.0 32 ............................ GCGGCGTTGTCGAGTGAGCAGAGCGCAGGGTC 3977772 28 100.0 32 ............................ ATCATGGGTGTGGATTGGAATCGGGCTTCGAC 3977712 28 100.0 32 ............................ CAGCCGCGCCAGTTCGTTGAACAGCGCCCGAA 3977652 28 100.0 32 ............................ GTTAATTAGAACTCGCAATGCCAGCGATTCAA 3977592 28 75.0 0 ...........C.C......T.C.TCC. | ========== ====== ====== ====== ============================ ================================= ================== 10 28 97.1 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : ACGGACGCCTGAACATCGGCACCTGGCAGGGCATCTACCTGTGCGAACACCGCAACCACGGCGGCAGCCGCTCGCTGGTTGTCACGCTCAACGGGGAATAGCTCCCCGAAATGCGTCGCGCCAGCGACGCATCCCGATAAGCCTCGAACTGTCTGTACGGCAGTGAATCCTGAACCCGCAAGCCAGCCTTACGCTGTGCCTGTCTAAGCTGCCTATGCGGCAGTGAACCGCCGTGCCTGGTTGCGCATCGTTCCCTTGTTTTTCTAAGCTGCCTATACGGCAGTGAACGATTTTAGCCGCTAAAAAAGCCAGCCTAAGCTTTTCTAAGCTGCCTATACGGCAGTGAACGGGAGACAGGTTGTTTTTCGATGTGTCGGTTATTTCTAAGCTGCCTATACGGCAGTGAACATAAACCCAAAATCTAGTCACCATATGGTCAATTTCTAAGCTGCCTATGCGGCAGTGAACACCCTCAACAAAGCGCGAGCGGTTATTCGCAA # Right flank : CGACCTTAAGCGCTGTTGTCTGGCTATTATCGAGGTAGTACTGCGCCAGCGCTCACCCCCCTTAAATAACGAATATTGATGGCCTTCTTTCGTAACGTTTTTAAGTAATGAGTTTCTTTTAGAGGGAATGAAAAATTGTGGGGTCGGCATTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTGTCCTTATAGGGGAATAGCACGTTGACTTAAGTCAAATTCAAGGGAGTGAGTGACTGTGAAATACGATCCCGTTTTAAAAACGCTTGTGGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAACAGCATGCAGATATTAATTATCAGAAATTACATGCTCAACTAAATGAAATAAATAACGATAATATTCATGCCATATTGACTGCACAGGAAGCAACGTATTTTTTAAAGACGTTATGCACACCCAATCCTAATGACTCTTGGAAAACAGCAATATTTGGCTGTACCGATCCCATCTCGTCGTT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //