Array 1 8-515 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNCL01000191.1 Pseudoalteromonas citrea strain S2231 S2231_S26_L001_R1_001__paired__contig_192, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 8 28 100.0 32 ............................ TCACGTTACCTGAGTCACTTAAAGTTGTAGAG 68 28 100.0 32 ............................ AACAGGGTGGATGATAGTCCTCACGTGCGTAC 128 28 100.0 32 ............................ GTAATATTTATACCCTTTTTAAATACTAAATT 188 28 100.0 32 ............................ AGAAGAGTACAAGGGCAAGATTTTAAGAGATG 248 28 100.0 32 ............................ TTAATGAAGTGTTTACAGGTAGCTCAATGAAG 308 28 100.0 32 ............................ TTTATCTGGCATTAATGATGCGTTGAACACCT 368 28 100.0 32 ............................ AAACTGTGAAACTCCATGCACAGGTCCAAACT 428 28 100.0 32 ............................ ATCAATACAGCTGTGTACGAGATAAAACTACT 488 28 89.3 0 .........................GTG | ========== ====== ====== ====== ============================ ================================ ================== 9 28 98.8 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : ATCTTATG # Right flank : ATGAGTGACCGAAACGAAGTTTCGCAGCGCTAAGAAGTGAGGTCATGGATGACCGATGTAACCCAGCTCCAAGGATGGATTTAAAACGCTGAAGTTAATTTTATCTGTTCACTGCCGCACAGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [10.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 343-550 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNCL01000190.1 Pseudoalteromonas citrea strain S2231 S2231_S26_L001_R1_001__paired__contig_191, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 343 28 100.0 32 ............................ CTATATTTGTTCAGGCTGACACTGCTAAAGAA 403 28 100.0 32 ............................ GCCATCATGTAGTAAATAATCACCGCGAATTT 463 28 100.0 32 ............................ TGATCTCGGTAAAGAAGGTAGAGAGTACATGT 523 28 89.3 0 .........................GTG | ========== ====== ====== ====== ============================ ================================ ================== 4 28 97.3 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AATTTACTTACCAACGTCTAACCTTTATATGCGCGGCATAAAGCCCCGCCAACGGCTAAGATGAAACGCAATATTGGCCCCATACTCCGTCTTTCTGACGAAGGTCAGAATCCATTTTAGTATTGAGTGTGTCGTTAAATGTGCAATGAAATCATTGATGGTGCAGTTTCAGTTTTCATGTCATTATTTGTACGAACAGATGTAAAAATACCCTTTGATTTTTCGCTCTTTAAAAAAGCATTTAAAAACAATAACCTATATTTTCTTGGTTTTTACAAGGTAAAAATAGGTATATTGGTGTTAAGCTTCTGATTTTAATTGACTTAAGATAAATTAGTTATTG # Right flank : ATGAGTGACCGAAACGAAGTTTCGCAGCGCGAAGAAGTGAGGTCATGGATGACCGATGTAACCCAGCTCCAAGGACGGATTTAAAACGCTGAGGTTAGTTTTATCTATTCACTGCCGCACAGGCTTTGGTAGTTTTTTTATGAAAAAATAAAAAATAAAAGTGAGACAAAAGTAAGGAAT # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 440-52 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNCL01000201.1 Pseudoalteromonas citrea strain S2231 S2231_S26_L001_R1_001__paired__contig_202, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 439 28 100.0 32 ............................ TTTTCAAAGCTGATTTTGAACTTTCTCAATAA 379 28 100.0 32 ............................ ACTCTCGTTTAATCTCGAAATTACCATTGTAT 319 28 100.0 32 ............................ GTTAGGTTTTGTGATTTTGCTTTTGTAAATAC 259 28 100.0 32 ............................ ATCAAGCGCATCGCGCCCAAATTCTAGACTGT 199 28 100.0 32 ............................ GTCCGTTTCGTTTGCAACCAACAGCGCTATTT 139 28 100.0 32 ............................ TGTTTCTTTGTCAATCTCGCCGTCCAAATGCC 79 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAACATAACTATTTGAATCAGCATAAAGGCGCTGACGACACACAATTGTGCCCAATTGCCTTACTCATTTCAGATATTCGCCACCGAGATCCAGCCATTCGAGAAACGTATGAAAAAGTGTTTGCAGGGTTTGTAGAGTATATAAACAGCCATGTAAACGAGCGCAGCGCCGCATTAGCGCAAGCAGCCACCATGATAGGCGCAGTCGCACTGGCGCAAACCTTAACGGACGAAAGCTTAAAAGCGGAGTTACTCGCCGCATGTGAGGCCGCAACTCGGTGTGAACAAGATTGATATTATTGTACGTAAATTCCGATATAGCACTTCAGCGCACCTTATGTCATGATGGGTCTGGTTAGGCTAAAAAACACCCTATAATTTTCGCTCTTTAAAAAATGCTGCTAAATCAGAGTGTTAAATAATGGCGCATTGTATAAGGTAAAAACACCAATTTAAATGTAACATATTGATATGCATTACCTTGATGTAAAAGTCGCATT # Right flank : ATAAAACTTTGAAGTTGTAGCGGTGCCGAGGAAGTTCGCTGCCGCTGAGGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 308-48 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNCL01000300.1 Pseudoalteromonas citrea strain S2231 S2231_S26_L001_R1_001__paired__contig_306, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 307 19 67.9 32 ---------................... AATAGCGAGTAATCTCGAAATTACCATTGTAT 256 28 89.3 32 .......T...........T......T. TTAAGGGATAAAGCTTGTGCTGTTGTAAATCC 196 28 96.4 33 ....T....................... TAAAAAATAGAAGCCAACCCCGAGACCATATTA 135 28 100.0 32 ............................ AGTTACGTAGTCAGTCTAGGCGTGAAACAGTG 75 28 92.9 0 .............A.......G...... | ========== ====== ====== ====== ============================ ================================= ================== 5 28 89.3 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : | # Right flank : AAGGTAGGATGAAAAAATAGATGGCGGAAGGGGTTTCGCTGCCGGGCG # Questionable array : NO Score: 3.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.46, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [35.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 642-134 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNCL01000059.1 Pseudoalteromonas citrea strain S2231 S2231_S26_L001_R1_001__paired__contig_59, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 641 28 100.0 32 ............................ ATACTCTCAAATTGCTTCAAAGCATACATCGC 581 28 100.0 32 ............................ CCACGAGTTAAGCGCATAAGCTCACCTGTTGC 521 28 100.0 32 ............................ TGACATATCAACTATTGAGCTGGCAACCTCGG 461 28 100.0 32 ............................ ATCTATATATGATGTGTACGTATCACCAAGAT 401 28 100.0 32 ............................ TGTGATAATTTTATGGCGATACAAAACTTCTT 341 28 96.4 32 .............T.............. AGCGTAAACTGGCTAAGGTGGAAATATATGAA 281 28 100.0 32 ............................ GCAATATTCAACAAGTACCGCCGACCCGCGCT 221 28 100.0 32 ............................ ACGCTAGGAAGTGATTGAGCTTAATATTAGGG 161 28 89.3 0 .........................GTG | ========== ====== ====== ====== ============================ ================================ ================== 9 28 98.4 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGAAAAGGCGCGAAAGCGCCTTTTTTGTGGGTGAATAATAAAGTCCTCTCCCACATTTTTTGTGGGTGATTTCAATACCCACATATAAAGTGCAGGGCTACATTTTTGGTAGGAATAAAGGAATCCATTTCATACTGGGCCATAAAGATACGGAGCGCGCTGTAGGCGAAGGTTTACCCTTCGCTTTTTTTCGTATAATTAGGAAAAAGAGCGATGGAGTGAATGGCGCGCAGTTTGTTTTGCACCTTCTCACACCGATCAAAGCCCAATGCCTTAAGCACTGTAATTAATATTTAACGTAGCTATAAAATCATCCGTGGCGATCTGCAATCATTCGTGTCATTATTTGTTCGAATAGGTGGAAAAACATCCTTTAATTTTTAGCTCTTTAAAAAGTCCATATAAAACAAATGCCTATATTTTATTGTTTTTTGAAGGGTAAAATGTAAGTTTTATTAGTAACGTTATGATTTAATTTAACTTTACCAAAATAGTTCATT # Right flank : GATGAGTGACCGAAACGAAGTTTCGCAGCACGAAGAAGTGAGGTCATGGATGACCGATGTAACCCAGCTCCAAGGATGGATTATTCACGCTTTAGTGGTGTTTTGTGGACCCTGAAACGAGTTCAGGGAGACGA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1603-52 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNCL01000159.1 Pseudoalteromonas citrea strain S2231 S2231_S26_L001_R1_001__paired__contig_159, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================================================================================================================================================== ================== 1602 28 96.4 32 .............C.............. TGTTTCTTTGTCAATCTCGCCGTCCAAATGCC 1542 28 96.4 32 .............C.............. ACGCGCGTTTAATGTGGGGGAGTAGAGAATCT 1482 28 96.4 32 .............C.............. GAAAAGAAATAACCGAAAAGCTCCGCCAATTC 1422 28 96.4 32 .............C.............. ATCACCCTCTACAGCAACACTCGCTGTGCGAC 1362 28 96.4 32 .............C.............. AATAGCAAGCTAGCTTTTTTCTCTGCTATCAT 1302 28 96.4 32 .............C.............. TTCTATTTTGAAGACTTCAATTTCTGGCTCTT 1242 28 96.4 32 .............C.............. CGTATCGTTTGCAACTAACAACGCTATTTTTT 1182 28 92.9 33 ..C..........C.............. CTTCGTCACTATAGGGACTCGACCATCACTGGG 1121 28 85.7 149 .............C...........GCG ATGAGTGACCGAAACGCAGTTTCGCAGCGCGAAGAGGTGAGGTCATGGATGACCGATGTAACCCAGCTCCAAGGACGGATTGTTCACGCTTAAGTGTCAATATTATGGACCCTGAAACAAGTTCAGGGAGACGAAGGAGTGGTTATGTT 944 27 71.4 178 ..G.....T....A...T..T..-..TG TGTTTGGGTAAGTTGCAGTGAGTTAAAAGGGTAAGTACCCTTTAAAAACCTTTTATTTTTCGCTCTTTAAAAAGTAATTATAAAACAGCAAGTTACAATTGGTCGTTTTTTATATGGTTAAAATGGTATTTTAGCCGTAATGACTTGTTGTAACTTATTTTTATGATGATAGTCTATT 739 28 100.0 32 ............................ ATTAAAATTAGGTGGCATGATGGCTTGTTCAT 679 28 100.0 32 ............................ TTGCATGGTTTGTTGCAGTGGGACTACTTCGT 619 28 100.0 32 ............................ AATCCGAACTATGGTGTAAGCTTAAAACCTGA 559 28 100.0 32 ............................ ATTTTGAACGGTAAGCCCAGGCAGGATTTCAC 499 28 100.0 32 ............................ GCTGGCTCACTTGGATCGGTTCGCAAAATTGC 439 28 100.0 32 ............................ TTTTAGGGCTTTGGGTTTGGCACTTAATACCT 379 28 100.0 32 ............................ AAGCAGCTCCATGAACTCGGCAAACCGCGAAT 319 28 100.0 32 ............................ ATTCTGCTACGGTAACTTTGGTTTTGATGGCA 259 28 100.0 32 ............................ AGAGAGCGAAAACGACACACAAAATTACATTG 199 28 100.0 32 ............................ TACAGAAGAAAATTTCGAGCGTTGGGCGGGTA 139 28 100.0 32 ............................ CTTCTGAGACCATGCATTTCAAAGAAACAATC 79 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================================================================================================================================================================== ================== 22 28 96.6 45 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GCCTTCGCCCTCTCCCAGTCGACATTC # Right flank : AACTACTAAGTACACAGCGTACGTGTCTGTGAAGTTCACTGCCGCATAGGCA # Questionable array : NO Score: 4.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:-1.15, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 63551-62669 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNCL01000023.1 Pseudoalteromonas citrea strain S2231 S2231_S26_L001_R1_001__paired__contig_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================================================================== ================== 63550 28 100.0 32 ............................ ATTTGGTCCGATAGAAAACTTTTGATTTTGTT 63490 28 100.0 32 ............................ TAAATATCATATCATTTTATACATCAAAGAGA 63430 28 100.0 32 ............................ ATTACTACCCCCTTTGCGCTGCGATTAAATCA 63370 28 100.0 32 ............................ AGTCCAAAAAACCTATGTTGAGTCGCTTGGGC 63310 28 100.0 32 ............................ AATTTGAGTGATATTGTTAAACCTGAATTCGA 63250 28 96.4 32 .........A.................. TAAAGATTTCATTCGCCCTCTCCGTACTGAAT 63190 28 100.0 32 ............................ GTATTGCGCGCCGTGATATTTGTCTTTATCAA 63130 28 85.7 106 ..C......................GTG ATGAGTGACCGAAACGAAGTTTCGCAGCGCGAAGAAGTGAGGTCATGGATGACCGATGTAACCCAGCTCCATGGACGGATTTAAAACGCTGAGGTTAGTTTTATCT 62996 28 89.3 32 A............C...A.......... ATTGTGGTGTTACAGTCCAAATGCCGGTATTG 62936 28 92.9 32 ..........A..C.............. ACCAGATATCGCTGTTCTTTGCCCTTAAACTG 62876 28 82.1 32 .....A...A.....T.T...C...... ATTAGTCGTCTAGCTCTTTGTCTAAACGTCGG 62816 28 92.9 32 ..........A..C.............. GTAGAATGTGACTCTGTGCCACTCGGTTTTAT 62756 28 96.4 32 .............C.............. ACGAGGTAGACGAAGAGTTAAAGCAGATTAAA 62696 28 92.9 0 .............C.A............ | ========== ====== ====== ====== ============================ ========================================================================================================== ================== 14 28 94.9 38 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : CTGCCACACAGGCAGCTTAGAAATCAGACGGTCAATCAATCTCTATAATCTTTCAGTTCACTGCCACACAGGCAGCTTAGAAAATCATTCAGACCTGTGCTCTAGTTTGTTTTTAGTTCACTGCCACACAGGCAGCTTAGGTGATGAGTGACCGAAACGAAGTTTCGCAGCGCGAAGAAGTGAGGTCATGGATGACCGATGTAACCAAGCTCCAAGGACGGATTTAAAACGCTGAGGTTAGTTTTACTATTCACTGCCGCACAGGCTGTAGTGGGTGCTTTATGGACCCTGAAACAAGTTCAGGGAGACAATGAGTAGCTGCGGTTGGGTAAGTTGCAGTGAGTTAAAGGGGTAAATACCCTATAAAAACCTTTTATTTTTCGCTCTTTAAAAAGTAACTATAAAACAGTAAGTTACAATTGGTCGTTTTTTTATATGGTTAAAAGGGTATTTTAGCCGTAACGACTTGTTGTAACTTATTTTTATGATGATAGTCTATT # Right flank : ATTCAACCAAGAAACGCTCACAAGCAACTGCAGTTCACTGCCGCACAGGCTGTAGTGGGTGCTTTATGGACCCTGAAACAAGTTCAGGGAGACGAAGGGTGGTTACGTTGTGTATGCGCGCGGCATAAAGCTTTTCCAACGAGTGAGGTCCCACACAGTTTGTCTTTCTGACGCAGGTCAGAATCTACTGAGTAATAAGCGCGGCATAAAGCCCAGCCAACGCGTGAGGCACCATACAGTTCGTCTTTCTGACGCAGGTCAGAATCCATGGTTTTAAAGTGTTTGCTTGCAAACCCAGATGCAAAATGGTGCGTCGAGTACGCAAATACAATTTTCAAAAACGTTGATAAATACTTTAGAAAGCTATCAATATGGTGGCGGTGGTCGCTTTCATGCGAGTGCTTAATTAGGAGGTAACTGAGGGCGCTGTTTGGGTGCGCCCTGTTATTGATCACGCTATTTCATCACAATAGTACTTTGTAGCGCAAATGTGCCGTGTT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 64655-63908 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNCL01000023.1 Pseudoalteromonas citrea strain S2231 S2231_S26_L001_R1_001__paired__contig_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 64654 28 100.0 32 ............................ ATTCGCTCTGCGTCGTACATTTGCAAACGCAC 64594 28 100.0 32 ............................ CGAATGGGATAAGACAAGCGCAGCGCAGGCTT 64534 28 100.0 32 ............................ TGATTAAAGAAATAGAACGTATGATTATGCTC 64474 28 100.0 32 ............................ TCTAGATGATGAACAAGTTAAAACTTATTCAA 64414 28 100.0 32 ............................ AGTTGTCGCGAAATATTGCAAGGGCGGGATGC 64354 28 100.0 32 ............................ TCATTCTCAAGCTGCATCGAGTTAACCCAATC 64294 28 100.0 31 ............................ ACTGCGTTTGTTGAAGCTTGGCGTTCTGGTA 64235 28 92.9 32 ..........G..C.............. ACACAATTTAGCTGGCGCGCTTGCTTGCAGAC 64175 28 92.9 32 ..........G..C.............. ACGTTGTCATACACGCAAAGCATGGCGCTATA 64115 28 100.0 32 ............................ CACTAGTCCAAGATAGGTCGGCTGCGCCGACG 64055 28 96.4 32 .............C.............. TCAGACGGTCAATCAATCTCTATAATCTTTCA 63995 28 96.4 32 .............C.............. ATCATTCAGACCTGTGCTCTAGTTTGTTTTTA 63935 28 85.7 0 .............C...........GTG | ========== ====== ====== ====== ============================ ================================ ================== 13 28 97.3 32 GTTCACTGCCACATAGGCAGCTTAGAAA # Left flank : TCACTGCCGCACAGACTGTAGTGGTGCTTTATGGACCCTGAAACTAGTTCAGGGAGATGAAGGGTGGCTGCGTTTTATATATGCGCGGCATAAAGCTTTGCCAACGAGTGGGGCATATGAATTTCGTCTTTCTGACGCAGGTCAGAATCCATGGTTTTAAAGTGTTTGCCTGCACCGTTTAGTTTAATTCATACAGTGACCGATGTAACCCAGCTCCAAGGATGGATTATTTACGCTGTAGTGGATGCTTTATGGACCCTGAAACCAGTTCAGGGAGACGAAGGGTGGTTATGTTATGCACTGTCGTAAAGGTAGTTTGACGTGTTTGGGTAAGGTGCAATGAGTTAAAGGGGTAAATACCCTTTAAAAACCTTTTATTTTTCGCTATTTAAAAAGTAACTATAAAACAGTAAGTTACAATTGGTCGTTTTTTATATGGTTAAAATGGTATTTTAGCCGTAACGACTTGTTGTAACTTATTTTTATGATGATAGTCTATT # Right flank : ATGAGTGACCGAAACGAAGTTTCGCAGCGCGAAGAAGTGAGGTCATGGATGACCGATGTAACCAAGCTCCAAGGACGGATTTAAAACGCTGAGGTTAGTTTTACTATTCACTGCCGCACAGGCTGTAGTGGGTGCTTTATGGACCCTGAAACAAGTTCAGGGAGACAATGAGTAGCTGCGGTTGGGTAAGTTGCAGTGAGTTAAAGGGGTAAATACCCTATAAAAACCTTTTATTTTTCGCTCTTTAAAAAGTAACTATAAAACAGTAAGTTACAATTGGTCGTTTTTTTATATGGTTAAAAGGGTATTTTAGCCGTAACGACTTGTTGTAACTTATTTTTATGATGATAGTCTATTGTTCACTGCCGCATAGGCAGCTTAGAAAATTTGGTCCGATAGAAAACTTTTGATTTTGTTGTTCACTGCCGCATAGGCAGCTTAGAAATAAATATCATATCATTTTATACATCAAAGAGAGTTCACTGCCGCATAGGCAGCTT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCACATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCACATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //