Array 1 65802-63314 **** Predicted by CRISPRDetect 2.4 *** >NZ_SEZM01000016.1 Aliivibrio finisterrensis strain A26 NODE_16_length_105445_cov_70.3826, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 65801 28 100.0 32 ............................ ATGGCTAGGACCAAGCACAGCAAAGGCTTATG 65741 28 100.0 32 ............................ ACTAGCGCAAATTTGGACAATTTCCGCTAACC 65681 28 100.0 32 ............................ TTGTGTTTAGTTGTTGCAATAAGCTCCCTAGG 65621 28 100.0 32 ............................ ATTCGAGCAGCTTGAATGTACGCCTTATGTCT 65561 28 100.0 32 ............................ TCCTCTCGCAAAATTAGCAATTGCTAATTTAG 65501 28 100.0 32 ............................ AAGAAAACAGAAAACAGGCCAAAAACGGTTGA 65441 28 100.0 32 ............................ GTTAACTAACCATTGACCCTCAAATCCTTTGT 65381 28 100.0 32 ............................ AAAAGCCACGTAGTGTATGACCAAGAAATGGC 65321 28 100.0 32 ............................ GTTCAGCAATAAATCAATCGCACGACGATATT 65261 28 100.0 32 ............................ AGAACGGTATAAGCAATATCAAACCCATCAAC 65201 28 100.0 32 ............................ TGACGTTGGTAAATCTTGCTTGTTACTGGGTA 65141 28 100.0 32 ............................ ATGCTCATGAAAGAGATTGCAGCTAGGTTATA 65081 28 100.0 32 ............................ ACGTTGGAGAAGATGACTCTTATGTTGTTGTT 65021 28 100.0 32 ............................ GAGAACTACGCATAACCAGTACTTATCTTTTT 64961 28 100.0 32 ............................ TACGATTTTCATTTTAACGCCACATTTTCCAA 64901 28 100.0 32 ............................ ATGGAAAGTTTATGGGAACTTGGTTTGATTTC 64841 28 100.0 32 ............................ ACTGAGAAATTCAAAACTTGCTGTGGAAAATG 64781 28 100.0 32 ............................ CTTTAATTTCTTTAATTGGTTACATAACCCAT 64721 28 100.0 32 ............................ TGAAGCTTAAATGGTTATAAGCAGTCGCCTCA 64661 28 100.0 32 ............................ TAGCACTAAATAACCAAACAATGAGCAGTCGA 64601 28 100.0 32 ............................ TATTAATTCGTGATGGCCGTTAACTTGAGTGT 64541 28 100.0 32 ............................ TTCTTAGGGAATCCATTCAATTGGATCATTAC 64481 28 100.0 32 ............................ TTGTTCGCCCCCTTACAAATGAATTTGAAAGC 64421 28 100.0 32 ............................ TCTCATAATGCGCACTTAGCTACGGCTTCTTT 64361 28 100.0 32 ............................ TTTGGAGAACGGCCGCGAGGATTTAATCTAAA 64301 28 100.0 32 ............................ ATCCAGTACCAGACACCAGAAGTGACGTAGTA 64241 28 100.0 32 ............................ GGCTAAAGACGATCCACCACTTGTTACTCGTT 64181 28 100.0 32 ............................ TAATTCTCAACATTTCTGTCCTTACCCATCCA 64121 28 100.0 32 ............................ TTGCTGATAGATCAGATGATTTATCAACCAGT 64061 28 100.0 32 ............................ TTGACTACTACGTAGAATTTAACAAAGTTAGA 64001 28 100.0 32 ............................ GACAAGTGTGTAAGCTCGGCTGAATCTTGTAT 63941 28 100.0 32 ............................ CGCTACACGGTCAAGCAAAGGGTAGTGATGGA 63881 28 100.0 32 ............................ ACACTCAATCTGGTCTATAACCATGTTATTTT 63821 28 100.0 32 ............................ AATCCAAAGCGCAATGAAATCGGTATTGTGTG 63761 28 100.0 32 ............................ ATCAACTTTGCATCGATAGCTAAAGTGAATAC 63701 28 100.0 32 ............................ TTCCACAATGAAGATGATCGAGAGTTAGATTC 63641 28 100.0 32 ............................ TTGAGTTAATCCGCTTGGCAATGCTGCTGGAT 63581 28 100.0 32 ............................ AAGAAAACGAGATCCGATAATTTCATCACTCA 63521 28 100.0 32 ............................ AATAGACAGGCGATTGACGAGAACCAACCGAA 63461 28 100.0 32 ............................ ACCAGAAAAACCAAATAACATTATCTATATCC 63401 28 100.0 32 ............................ TAACATCCCGTAAGCCAACATGGCTCTAGAGT 63341 28 75.0 0 ...........TG........AA.AG.G | ========== ====== ====== ====== ============================ ================================ ================== 42 28 99.4 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TGAAGCAGTTATTTGAGATAAATTGGCTGAAAGGCTTACGTGATTATTGCTCTCAAACATCAATTTCATTGGTTCCAGAGGGTTGTCAATATCGCTGTGTAAAACGCAAACAAGCTAAAAGCGCTAATAATAAACGCAAGCGTTCTATTGCTAAAGGTTGGTTGAGTGAAGAAGAAGCGACATTGAAAATTGGTAATGAACAGCAAAAAATGTTGCGCTTACCCTTTGTTCAATTAAAGAGTACATCCACAGGACAGGTGATGAAGTTATTCATTGAACATGGTGGATTGCAAGATAAAGCGGTTGAAGGTCAGTTTAATCGCTATGGATTAAGCTCATCAGCAACGGTCCCTTGGTTTTAACCCAAAATAACCAAAAAAATGGCTCTTTAAAATGAAGTAATAAAATCAGTAAGTTACAATAGGTAGGGGAAATTAGGTAAAAATGGGTATTTTCACTTATCTGCTTGTTGTAACTTATTTTTATGCTGATATTCTATT # Right flank : TTAAGAAAGAAGTTTGATAGCTATACCTCATATACTTTTAATATTTGCGGTATGACAGCGTTGCTAGAAAATTGATCTTGAATGGTTCTTTGGGCTGCGTGTTGAATTTCAACTTTATTAATCGATGACAATTCAAACCAGTGGAGTAGGGCTTGAGAAAGAGCTTCTGGCTCGGTTATCCATCCATTCATTTCTGGCTGTATGAGTTTACTGATATTACCCACAGGGGTTGATATTACTGGTATTCCTCTTCCCATCGCCTCTAATGCCGTCATGGGGAGCCCCTCGTAGCGAGAGCAGATAATCAGTAAGCCAATATCATTCCAAATGGTGTCCATTGAATCTTGATGTCCATGAAAAATTACGTTGTTTGGAAGGTGTTTAATCAGCTCTTTCTCCATCGGGCCTGAACCATAAATATGAAAAGAGTGATTAGGGTGTTTCTTTGCTAATTCGATGAATCTATCAGGGGCTTTTTCATGGCTTAAACGACCTACAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 76674-75386 **** Predicted by CRISPRDetect 2.4 *** >NZ_SEZM01000016.1 Aliivibrio finisterrensis strain A26 NODE_16_length_105445_cov_70.3826, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 76673 28 100.0 32 ............................ ATCGGAATAACAGCAATTATATTAATTTTATT 76613 28 100.0 32 ............................ AAATAAATACAAAGATAATCGCATTGACAATA 76553 28 100.0 32 ............................ TCAGTATGGTGCAACCCGCCATATAGCGATAT 76493 28 100.0 32 ............................ AGCAAGACGAAGAAGAAAAAACAGAATAAGAA 76433 28 100.0 32 ............................ ACAGTCAAAGATAAACCCACGACCCAAGAATC 76373 28 100.0 32 ............................ AAGCCGCCACCTGCTACGACAAAAAATATCAT 76313 28 100.0 32 ............................ AACAACAGTTTACCACGTTGGAGAAGATGACT 76253 28 100.0 32 ............................ TGTTAACTGGATAGCTGAGGCTATTGCTGATT 76193 28 100.0 32 ............................ ATCAAAAGAAAATAAAAAAAGATGTAAATCTT 76133 28 100.0 32 ............................ ATCTAAGTTTGATGCTAATCCATTTTTTCAAG 76073 28 100.0 32 ............................ AGAAAGGTTGATGGAGATTGGTACTGCTGCGC 76013 28 100.0 32 ............................ CACCGCCATTGGAGGGGATAAAAACTCGTAAA 75953 28 100.0 32 ............................ TCGCGCAGCTCGTCAAAAATAACAAAGTGCCG 75893 28 100.0 32 ............................ AAGCAAGTCCAATCCGTCTAGTTGCTCCGTCC 75833 28 100.0 32 ............................ ATTGACGATTTTCACGAAATGTTTGGCCGTGA 75773 28 96.4 32 ............G............... TAGACCGTAAAGCAATACCTAAGTCTGACCCA 75713 28 100.0 32 ............................ ACAAAGCATCCACGGTTCAGTTCTTACAACCC 75653 28 100.0 32 ............................ ACCGCCTCTTCAAATTGACTGACACATTCGTA 75593 28 100.0 32 ............................ TTTACTATGTTTCGGCGGCGAACCGCTAATAC 75533 28 100.0 32 ............................ ATTAAAAATTATCTCTAATCAATTTCCAAATG 75473 28 100.0 32 ............................ ACCACTCTTTTTAAAGCTAATCCTGGCAAACC 75413 28 67.9 0 .......A...C.....T..AA..ATTG | ========== ====== ====== ====== ============================ ================================ ================== 22 28 98.4 32 GTTTACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATAAAGTAAAGGGAGTTACATAACTCGCACTTAATTGCTTTTCAACCTGATCAACAAGGCGCTGTTGGTTGCACCATAAAATGCAGTTATATTTTTGGTGATTAATGCTTTTAATTAGATTGATTAAGCAGACTTCAGAACCACGGATCCAATCATCACCATAATGAACAAACAGTAAGGTTGTTTTTGTTGTATTTTCCATAGCACACCTTCCTCGCATTCTCTCTGATATAAGAGATAGAGCAAGGGCAGTGCCAGATTGTAATTGTTTTTATTTTATTGATTTTTAAAGGGAATTATTATGTGTATAGATCAGTTTTCTCAAATTGAGAATGTGGTTTTTTAAATTGGGAATCAGAGAGATAAAAAATACCAAAAAAAATAACGTTAACAATAGAATAATAAAATCAATGAGTTACAGGTTGGTTGGGAAAGTAGGTTAAAAAGTAATATTTAAGCTATCTGCTTGTTGTAACTTATTTTTATGCTGATATTCTACT # Right flank : ATTAAAATAACGAGATAACCATCATAAAATATCGATAAATATACTATTTTATTTATGAAATAGTATTATAGTAACTCTTTGTTTAATATTAACTTTATTGATAAGGCTGTTAATAGTGGAGCAACTCTCTCGTTTATCAATTATTCATAAATTACTTAGCCAATCCAAATACCCAGTACCGAAAAGTAAACTTCTAGAAGCGCTAGAGTGCTCAGAATCCACATTTAAACGGATACTTCGTAAAATCAATGACGAATTTGATGCTTCAATCTCATACGATAGAGAACTAAAAGGATATGCATACGATTCTGATAGTCATCAACTTCCATTATCGTATCTGAATTTTACTGATAAAGAATGGTTTGCCTTATTAACCGCAGAAAAACTATTTACCGATCTACATACAGGATCATTAAATAAAGAGCTAGAAGGGATCAAACACGTTCTACAAAAGACAAAAAATCGAGCAACAGATTTTGGCATCGCTAATAAAATAGAAA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched CTTTACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //