Array 1 105484-104658 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIXI01000015.1 Streptomyces sp. CB00316 scaffold15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 105483 37 100.0 37 ..................................... GGTATCGGTCACGGTCATCGCCTCCTCTCCGGGGCGC 105409 37 100.0 22 ..................................... ACCAGGTCCTTGGCCTCCGGGT Deletion [105351] 105350 37 86.5 35 ..........C.C..C...GT................ CTCTCCGTCAAGCCGTTGATCTCCGACTACGTCCG 105278 37 91.9 37 ..........C.C......G................. GGGGGTGCCCGGGACCGGCTTGGCCGACGTCGGGTAG 105204 37 89.2 35 ..........C.C..C............A........ ACGCTGCTGAGCGGGATCGCCGCCCCGCAGCTCGG 105132 37 83.8 35 ..........C.C..CA.AG................. GCACCCTCACCGCAGCCCGGCAAGCAGGCCGCGAC 105060 37 89.2 36 A.........C.C..C..................... ATCCCCCGGCCGGGCGGCGAGCCGTGCGTGTGGTGG 104987 37 100.0 37 ..................................... CAGGTGACCAGGCCGTCAACGCCCCGGAAACCGGCCC 104913 35 83.8 37 .....A......C..C...G......--......... AACGCTACCGACCCCGGGTTCTACGCCGACGAGGAGA 104841 36 86.5 37 ....A.....C....G...-........A........ AGGCTGGCCGCCATCACCGCAGCCGCCACGCCCAACG C [104830] 104767 37 86.5 36 ..........C.C..C..CG................. GAGTCGGTGTGTGCCAAGCACAATCCTGCTGCCCGC 104694 36 75.7 0 ....T....AC...T.T..-.........GC....G. | C [104683] ========== ====== ====== ====== ===================================== ===================================== ================== 12 37 89.4 35 GTGGCGGTCGTCTTCAGGGACGACCGAGGATCGCAAC # Left flank : CCACGCAGATGATCCTCGAGCCGATGCCGGCACCCCGACCGCGGACTACGACTATGGGCGAACAACCCGCGCTCTGACACCTGACCTCCTGACCGCCGAACCACCAACCTGCCTGTAACCGACACCCTAAGATTGGCCACTGACACAGCCGTTGCGATCCTTGGTCGCCTTCAAGGGCGACCGTCACGCCCGGTTCCTTGATGAGGGGGGCGGCGTCCTCGCGGTTGCGATCCTCGGCCGCCCCGAAGGGCGACCGCCACTCACATATTTCATGGATCGACGCATCGGCCGAACTCACTTCACCGTGAAGACCTCGTACGCTGACCAGCACGCGGGTTCACGTCCACGGTCACATGGCATTTCCCGTCCGCTTCGGAACCGGAAGCACACACGCGACACGCGGACCGCACCGAAGCCAGATGCCCGAAACCACCGAAATTATCACCTCCAGCGCGCTCCCTCTATGAAGAGCGCTAGGCTATTTGCACTGCTCAGACAGG # Right flank : CGCGCCCAGGCAACCCCGTTCATGCGGTGCGCCCCAGAATCCGGGGCTCGGTCGCCGGGGCGATGGTGGACAGCCCTGCCCGTTCAGCGGCGAGGCGTTGCAGGGCCCGTGCCCGGGATGCGTCGCTGGGTCGCACCTGCTGCTGGGCGGTTGCTCTGGCGTGGAGCTCGGCGAGGGCCTGGCGGCCATCGGCGAAGTTCTCCTCGGGTTCCCGGAGCCGGTCGCGGAGTTGCCGTTCGGCGGCCGCTTGGATCTCGGGGTTGGTGTGCCGCTGCCTGGTCCAGGTGGCGCGGTGGGCGGCGATGGCCTCGCGGTAGCCCTCCGGCGCCTCTTGCCGCGCGGACTCCCCGGACGTGGCAACGGGTTGCGGAGGGGCAGCGGGCGCAGGTGTCCGGGCATCGCTGGGCGGGGTGTGGTGGGGCGAGGAGAGTGCGGCAGGTCGCAGGATCTCCAGGTGCCGGACGGTGTCCGGGCCGACCACGGTGTTGACCTTGGCGACA # Questionable array : NO Score: 5.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.47, 5:0, 6:0.25, 7:-0.05, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGTCTTCAGGGACGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGCGGTCGTCTTCAGGGACGACCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.60,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [26-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 112618-113380 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIXI01000015.1 Streptomyces sp. CB00316 scaffold15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 112618 37 100.0 36 ..................................... TCCGGAGATGTGGTCGGCCCAGACCTTGTACAGGCC 112691 37 100.0 36 ..................................... GCCCCGTATACGTGCAGGCCACGGACCGCGTCCGCG 112764 37 100.0 35 ..................................... GTCCAAATCCGGGCCACCCTCGACACCAGGGTCGC 112836 37 100.0 36 ..................................... GCTCAGCTCATCAACGCCATCCCCACGAGTTTCCTG 112909 37 100.0 35 ..................................... GGCCGAGGCGGGCTGGACCAGAAGCGCTCGCTGTT 112981 37 97.3 35 ...................................G. GCCGCCGTGGGCACCTGCTGGACCAGCGTGTGCGG 113053 37 100.0 36 ..................................... TCCCAGACCCACGCCTCCAGGACGTCCGCGGTCCAG 113126 37 100.0 36 ..................................... ATCGGCACGATCAGCTCGTCGCCGCCCTCGACCCGC 113199 37 100.0 35 ..................................... TCCCCCGCCGAGGAGGCGATGCACGCGGCCCGTGA 113271 37 97.3 35 .............G....................... GCCCTGCTCAGCTACCCCTCGACGTAGCATCACGT C [113281] 113344 37 83.8 0 .........T.T.CA..................TG.. | ========== ====== ====== ====== ===================================== ==================================== ================== 11 37 98.0 36 GTGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC # Left flank : CGAACTGCCGGGCTATGCACCGTGGACGGCCACCTGATGGACCTGTTGCTGGCCTATGACGTCGACACCACCAGTCCGGCAGGTAGACGCCGTCTCCGCCGCGTCGCCAAGACCTGCGAAGGACACGGCCTACGCGTACAACAGTCTGTCTTCGAGATCGTCGCCGACGACAAAACCGTTCTCCGCCTGCTCCACGACCTTGGCCAGATCATCGACACGGATACCGACAGCATCCGCCTCTACCGGCTGCCACCCGAGGGCTTCAACCATGTCCAAACCCTAGGCATCGCCCAAGTCCAACCTCACCGCGAAGACCTCGTACTCTGACACCAAGCCGATCTACACCTCAGATCGCTCCAGTCTCTCCGCCTGCTTCGGAACCGGAAGCACACGCGACACGCGAATCGTACCGAAGCGAAATGGGCGAATTCGCCAGAACTGTTACCTGCGGTTCGGTCCCCTCCCATCGAGCAACGGGCTCTTAACGCTGGTCAAGCAGG # Right flank : CCTTCCGTTCGGTCGGCACTCACGGTGAGCTGTCCGGCGTGGACCTCGCCTGGGTCGCTCTGCAGCAGGCCCGTTCGACTACCGCGCCGGCGGCTGGGCCTTCCGCGAGGAGCGGCTGCAGCAGTTCGTCCGGTGGGTGCTCAACGGACAGCTCGTGTCGGTCGAGAGCTACCCCCGCTACCGGCGGGTGCGGCGTGTGGTCGACGGCGAGCAGCTGCGGTTTAGGCGAGGCAGGTGGTGGACGTCGCTGAAGTCGTCCGAGGACCAGTCCCGGCATGAGCTGATGCGCCGGCGCCAGGAAGCGGCGAAGGAGCAGCGCGAGGCCCGACAGCAACAGCAGGAGCAGGAGGCGGAGCAGCGGCGTAAGGAGCTGGAGGAGAAGGAGCGGATCCGGAAGGCGGAAGAGGCCGAACGCCTGCGCAAACAATGGGAGGAGGAGTCCCGCATCCGCAAGGCGGAGCGGGACAAGCGGTGGGCCGAGGAGAAGGCCCAGCGCGCCC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-19.00,-16.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //